Rh6CG069500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000451
Physical Location & Seq
Reverse (-)
6871610 .. 6873966
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG069500.1

Sequence Viewer

Length: 1074 bp
ATGGAATCAAACTCAGCCCTTTATGCCCCATGTCCCTCACTGCCAAATGTTCAAGAAATGGTGAGGACTGACCCTTTTCAGGTACCTGAAAAATACATCAGGAATGAAACAGACATTACAAAAGATGCAGATTTGTGTCCTCATGATCACCTTTCTTCTGAGGTTCCCATCATTGATCTTTCTTTGCTCTCAAAAGGGCACAAAGAGGAGCTCACCAAGCTGGACCAGGCTTGCAAGGAATGGGGTTTCTTTCAGGTGGTAAATCACGGAGTGGCGACAGAAGTAACCAAGGGCTTACAGGAAGCGGCGGAGAAGTTCTTTGAACTTCCATTAGACGAGAAGAACAGAATTGCTATGCCACCAAATGACATACAAGGCTATGGCCATACTAATGTGGATCACAAGGTGCTGGATTGGTCCGACAAACTTGTTCTTGTCGTTTACCCACACCAGTACAGAAAGCTCGAGGTTTGGCCACCCACTCCATTCAAGGAGGCTATTGAGACATACTCTAGTGAAGTTAGAAGAGTTGGAGAGGAGCTTCTCAGGTCTCTATCGTTAATCATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTGGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTACAAATCAAACACAACGGAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCATTGTGAATGTTGGAGATATTATTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATCTCTTATTCAACTTTTTGTTTACCACATCAAAATGCAGAAATTGAACCCCTGGATCAAATGGTTCTTGCGTCACCGGGGTCTTTTCCGTTGTACAAGAAAGTCACCTATGGGGATTATCTGAGGGAAACCAAGAAGATGAAATCTGAGGGGAAGGCACATGTCGTTGAAGTTGCCAAGATTGCAAGTTGA

Protein Analysis

357

Amino Acids

40.32

Weight (kDa)

5.64

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 55 - 160 7.4e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 207 - 303 2.6e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 82, 760
AccB1I GGYRCC 2 cut(s) 82, 760
AciI CCGC 2 cut(s) 305, 308
AclWI GGATC 3 cut(s) 405, 890, 945
AcoI YGGCCR 2 cut(s) 382, 473
AdeI CACNNNGTG 2 cut(s) 271, 406
AfaI GTAC 6 cut(s) 84, 455, 663, 762, 836, 977
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 1042
AgsI TTSAA 7 cut(s) 53, 323, 490, 848, 894, 929, 1052
AjnI CCWGG 2 cut(s) 225, 933
AluBI AGCT 5 cut(s) 211, 220, 463, 541, 696
AluI AGCT 5 cut(s) 211, 220, 463, 541, 696
Alw21I GWGCWC 3 cut(s) 213, 647, 679
Alw26I GTCTC 2 cut(s) 497, 555
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 3 cut(s) 405, 890, 945
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 3 cut(s) 382, 473, 627
ApaLI GTGCAC 1 cut(s) 675
Asp718I GGTACC 2 cut(s) 82, 760
AspS9I GGNCC 3 cut(s) 223, 417, 610
AsuC2I CCSGG 1 cut(s) 960
AsuHPI GGTGA 5 cut(s) 73, 140, 205, 948, 979
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 3 cut(s) 223, 417, 610
BaeGI GKGCMC 2 cut(s) 201, 679
BalI TGGCCA 2 cut(s) 384, 475
BanI GGYRCC 2 cut(s) 82, 760
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 3 cut(s) 213, 647, 679
BccI CCATC 2 cut(s) 176, 565
BciT130I CCWGG 2 cut(s) 227, 935
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 960
BcoDI GTCTC 2 cut(s) 497, 555
BfaI CTAG 1 cut(s) 513
BisI GCNGC 1 cut(s) 306
BlpI GCTNAGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 663
Bme1390I CCNGG 3 cut(s) 227, 935, 960
Bme18I GGWCC 3 cut(s) 223, 417, 610
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 223, 417, 610
BmiI GGNNCC 3 cut(s) 84, 165, 762
BmrFI CCNGG 3 cut(s) 227, 935, 960
BmsI GCATC 3 cut(s) 115, 571, 772
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu1102I GCTNAGC 1 cut(s) 697
BpuMI CCSGG 1 cut(s) 960
BsaI GGTCTC 1 cut(s) 555
BsaJI CCNNGG 3 cut(s) 288, 933, 959
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 2 cut(s) 227, 935
BseDI CCNNGG 3 cut(s) 288, 933, 959
BseGI GGATG 2 cut(s) 576, 586
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 8 cut(s) 27, 150, 559, 645, 653, 696, 995, 1020
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 221, 551
BseSI GKGCMC 2 cut(s) 201, 679
BshFI GGCC 3 cut(s) 384, 475, 629
BshNI GGYRCC 2 cut(s) 82, 760
BsiHKAI GWGCWC 3 cut(s) 213, 647, 679
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 2 cut(s) 18, 744
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 497, 555
BsmFI GGGAC 2 cut(s) 18, 744
BsnI GGCC 3 cut(s) 384, 475, 629
Bso31I GGTCTC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 4 cut(s) 201, 213, 647, 679
Bsp1407I TGTACA 1 cut(s) 975
Bsp143I GATC 5 cut(s) 145, 175, 397, 882, 937
Bsp1720I GCTNAGC 1 cut(s) 697
BspACI CCGC 2 cut(s) 305, 308
BspANI GGCC 3 cut(s) 384, 475, 629
BspCNI CTCAG 8 cut(s) 26, 151, 558, 646, 652, 695, 996, 1021
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 84, 165, 762
BspPI GGATC 3 cut(s) 405, 890, 945
BspT107I GGYRCC 2 cut(s) 82, 760
BspTNI GGTCTC 1 cut(s) 555
BsrGI TGTACA 1 cut(s) 975
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 288, 933, 959
BssMI GATC 5 cut(s) 145, 175, 397, 882, 937
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 227, 935
Bst6I CTCTTC 1 cut(s) 520
BstAUI TGTACA 1 cut(s) 975
BstC8I GCNNGC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 576, 586
BstKTI GATC 5 cut(s) 148, 178, 400, 885, 940
BstMAI GTCTC 2 cut(s) 497, 555
BstMBI GATC 5 cut(s) 145, 175, 397, 882, 937
BstMWI GCNNNNNNNGC 3 cut(s) 23, 217, 1064
BstNI CCWGG 2 cut(s) 227, 935
BstNSI RCATGY 1 cut(s) 1046
BstSCI CCNGG 3 cut(s) 225, 933, 958
BstSLI GKGCMC 2 cut(s) 201, 679
BstX2I RGATCY 1 cut(s) 882
BstYI RGATCY 1 cut(s) 882
BsuRI GGCC 3 cut(s) 384, 475, 629
BtsCI GGATG 2 cut(s) 576, 586
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 647
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 223, 417, 610
CseI GACGC 1 cut(s) 942
Csp6I GTAC 6 cut(s) 83, 454, 662, 761, 835, 976
CviAII CATG 4 cut(s) 30, 143, 565, 1043
CviQI GTAC 6 cut(s) 83, 454, 662, 761, 835, 976
DpnI GATC 5 cut(s) 147, 177, 399, 884, 939
DpnII GATC 5 cut(s) 145, 175, 397, 882, 937
DraIII CACNNNGTG 2 cut(s) 271, 406
EaeI YGGCCR 2 cut(s) 382, 473
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
EciI GGCGGA 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 555
Eco47I GGWCC 3 cut(s) 223, 417, 610
Eco53kI GAGCTC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 225, 933
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 33, 146, 568, 1046
FaqI GGGAC 2 cut(s) 18, 744
FatI CATG 4 cut(s) 29, 142, 564, 1042
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 583, 593
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 513
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 384, 475, 629
HapII CCGG 1 cut(s) 959
HgaI GACGC 1 cut(s) 942
Hin1II CATG 4 cut(s) 33, 146, 568, 1046
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 959
HphI GGTGA 5 cut(s) 73, 140, 205, 948, 979
Hpy166II GTNNAC 3 cut(s) 442, 677, 905
Hpy188I TCNGA 6 cut(s) 160, 421, 593, 685, 1005, 1030
Hpy188III TCNNGA 5 cut(s) 53, 100, 143, 602, 779
Hpy8I GTNNAC 3 cut(s) 442, 677, 905
HpyAV CCTTC 3 cut(s) 571, 796, 1030
HpyCH4V TGCA 6 cut(s) 128, 234, 677, 712, 920, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 217, 1064
Hsp92II CATG 4 cut(s) 33, 146, 568, 1046
KpnI GGTACC 2 cut(s) 86, 764
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 145, 175, 397, 882, 937
LmnI GCTCC 3 cut(s) 208, 538, 693
LweI GCATC 3 cut(s) 115, 571, 772
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 283, 859, 954, 985
MalI GATC 5 cut(s) 147, 177, 399, 884, 939
MboI GATC 5 cut(s) 145, 175, 397, 882, 937
MboII GAAGA 5 cut(s) 147, 352, 537, 728, 1030
MflI RGATCY 1 cut(s) 882
MhlI GDGCHC 4 cut(s) 201, 213, 647, 679
MlsI TGGCCA 2 cut(s) 384, 475
MluCI AATT 2 cut(s) 348, 924
MluNI TGGCCA 2 cut(s) 384, 475
MmeI TCCRAC 4 cut(s) 444, 511, 637, 781
Mox20I TGGCCA 2 cut(s) 384, 475
MscI TGGCCA 2 cut(s) 384, 475
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 4 cut(s) 390, 569, 707, 915
Msp20I TGGCCA 2 cut(s) 384, 475
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 227, 935, 960
MvaI CCWGG 2 cut(s) 227, 935
MwoI GCNNNNNNNGC 3 cut(s) 23, 217, 1064
NciI CCSGG 1 cut(s) 960
NdeII GATC 5 cut(s) 145, 175, 397, 882, 937
NlaIII CATG 4 cut(s) 33, 146, 568, 1046
NlaIV GGNNCC 3 cut(s) 84, 165, 762
NmuCI GTSAC 2 cut(s) 954, 985
NspI RCATGY 1 cut(s) 1046
PaeR7I CTCGAG 1 cut(s) 464
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 1042
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 307
PscI ACATGT 1 cut(s) 1042
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 225, 933
PspGI CCWGG 2 cut(s) 225, 933
PspN4I GGNNCC 3 cut(s) 84, 165, 762
PspPI GGNCC 3 cut(s) 223, 417, 610
PspXI VCTCGAGB 1 cut(s) 464
PsuI RGATCY 1 cut(s) 882
RsaI GTAC 6 cut(s) 84, 455, 663, 762, 836, 977
RsaNI GTAC 6 cut(s) 83, 454, 662, 761, 835, 976
RseI CAYNNNNRTG 4 cut(s) 390, 569, 707, 915
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 5 cut(s) 145, 175, 397, 882, 937
Sau96I GGNCC 3 cut(s) 223, 417, 610
ScaI AGTACT 1 cut(s) 663
ScrFI CCNGG 3 cut(s) 227, 935, 960
SduI GDGCHC 4 cut(s) 201, 213, 647, 679
SfaNI GCATC 3 cut(s) 115, 571, 772
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 3 cut(s) 223, 417, 610
SlaI CTCGAG 1 cut(s) 464
SmiMI CAYNNNNRTG 4 cut(s) 390, 569, 707, 915
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 348, 924
SsiI CCGC 2 cut(s) 305, 308
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 225, 933, 958
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 465
TasI AATT 2 cut(s) 348, 924
TatI WGTACW 4 cut(s) 453, 661, 834, 975
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 2 cut(s) 45, 647
TseFI GTSAC 2 cut(s) 954, 985
Tsp45I GTSAC 2 cut(s) 954, 985
TspDTI ATGAA 3 cut(s) 120, 778, 1037
TspGWI ACGGA 3 cut(s) 282, 765, 960
TspRI CASTG 2 cut(s) 45, 647
VneI GTGCAC 1 cut(s) 675
VpaK11BI GGWCC 3 cut(s) 223, 417, 610
XceI RCATGY 1 cut(s) 1046
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.