Rh6BG013700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000451
Physical Location & Seq
Forward (+)
1971665 .. 1976154
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG013700.1

Sequence Viewer

Length: 780 bp
ATGAAGGATGCTGCTGCGAAATTTTTTGACCTTCCATTAGAAGAGAAGAGCAAAATTAGTATGTCACTAGATGAGTTTCAAGGCTACGGGCAAGCCTATGCTGCTGCCGAAGGGCAAACCCTTGACTGGTCTGACACACTGTTTCTCAGTGTTTATCCATCTCATAGTAGAAACCTTGAGTTTTGGCCAACATCACCAAAAGGATTCAAGGAAGCAATTGAGGCATATTCTACTGAAGTTAAAAGGATTGGAGAGGAGCTCTTAGGGTCTATCTCTCAAATTATGGGGATGGAGAAGGATGCTCTTCTTGGATTTCATCAAGAGTTGGTCCAAGTTTTTCGTGTGACCTACTATCCTCCGTGCTCCAAGCCAGATAAAGTACTAGGCTTAAGTCCACACTCTGACACAAGCACCATAACCATACTCATGCAGGAAGATGATGTTACCGGATTACATATTCGAAAAGAAGGAAAATGGGTGCCGGTAGAGCCAATTCCAAATGCTTTCGTTGTTAATGTTGGAGATATGATTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGCTGTGACGAACAAAAGCAAGGCAAGATTATCTTATGCAACATTTATAATTCCACATAACGATGTTGAAATTGGACCATTTAATCATTTAGTGGACCAGTCATCTCGAAAGTACAAGAAAGTAGTATACGGAGAATATTTGAGGAGTTCCTTGAAGGGAAAACTTGAGGGGAAGTCGCACACTGAAACAGCAAAGATCGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

259

Amino Acids

29.11

Weight (kDa)

6.26

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 1 - 64 5.7e-11 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 111 - 208 6.6e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 699
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 3 cut(s) 381, 554, 686
AfiI CCNNNNNNNGG 1 cut(s) 126
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 5 cut(s) 80, 208, 566, 641, 727
AluBI AGCT 2 cut(s) 259, 575
AluI AGCT 2 cut(s) 259, 575
Alw21I GWGCWC 2 cut(s) 261, 365
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 11, 14, 101, 104
ApoI RAATTY 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 328, 647, 667
AsuHPI GGTGA 1 cut(s) 186
AsuII TTCGAA 1 cut(s) 460
AvaII GGWCC 3 cut(s) 328, 647, 667
BalI TGGCCA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 261, 365
BbvI GCAGC 2 cut(s) 88, 91
BccI CCATC 2 cut(s) 166, 283
BfaI CTAG 2 cut(s) 68, 383
BfrI CTTAAG 1 cut(s) 388
BisI GCNGC 4 cut(s) 12, 15, 102, 105
BlsI GCNGC 4 cut(s) 13, 16, 103, 106
BmcAI AGTACT 1 cut(s) 381
Bme18I GGWCC 3 cut(s) 328, 647, 667
BmgT120I GGNCC 3 cut(s) 328, 647, 667
BmiI GGNNCC 1 cut(s) 480
BmsI GCATC 1 cut(s) 289
BplI GAGNNNNNCTC 2 cut(s) 243, 275
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 2 cut(s) 197, 758
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 131, 670
BseGI GGATG 3 cut(s) 13, 294, 304
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 131, 670
BseRI GAGGAG 2 cut(s) 269, 730
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 478
BsiHKAI GWGCWC 2 cut(s) 261, 365
BsiSI CCGG 2 cut(s) 447, 482
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 261, 365
Bsp143I GATC 1 cut(s) 768
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 480
BspQI GCTCTTC 2 cut(s) 41, 309
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 131, 670
BssAI RCCGGY 1 cut(s) 481
BssMI GATC 1 cut(s) 768
BssNAI GTATAC 1 cut(s) 700
Bst1107I GTATAC 1 cut(s) 700
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 3 cut(s) 36, 41, 309
BstAFI CTTAAG 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 146, 262
BstF5I GGATG 3 cut(s) 13, 294, 304
BstKTI GATC 1 cut(s) 771
BstMBI GATC 1 cut(s) 768
BstMWI GCNNNNNNNGC 3 cut(s) 101, 221, 487
BstV1I GCAGC 2 cut(s) 88, 91
BstZ17I GTATAC 1 cut(s) 700
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 13, 294, 304
BtsIMutI CAGTG 3 cut(s) 137, 154, 753
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 3 cut(s) 328, 647, 667
Csp6I GTAC 3 cut(s) 380, 553, 685
CviAII CATG 1 cut(s) 427
CviJI RGCY 8 cut(s) 84, 95, 187, 259, 370, 387, 490, 575
CviKI_1 RGCY 8 cut(s) 84, 95, 187, 259, 370, 387, 490, 575
CviQI GTAC 3 cut(s) 380, 553, 685
DdeI CTNAG 2 cut(s) 146, 262
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 3 cut(s) 36, 41, 309
EarI CTCTTC 3 cut(s) 36, 41, 309
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 3 cut(s) 328, 647, 667
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 1 cut(s) 430
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 1 cut(s) 426
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 12, 15, 102, 105
FokI GGATG 3 cut(s) 20, 301, 311
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 12, 15, 102, 105
FspBI CTAG 2 cut(s) 68, 383
GluI GCNGC 4 cut(s) 12, 15, 102, 105
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 447, 482
Hin1II CATG 1 cut(s) 430
HinfI GANTC 1 cut(s) 204
HpaII CCGG 2 cut(s) 447, 482
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 395, 667, 700
Hpy188I TCNGA 3 cut(s) 133, 403, 773
Hpy188III TCNNGA 2 cut(s) 320, 678
Hpy8I GTNNAC 3 cut(s) 395, 667, 700
HpyAV CCTTC 5 cut(s) 41, 104, 289, 461, 721
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 430, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 221, 487
HpyF3I CTNAG 2 cut(s) 146, 262
Hsp92II CATG 1 cut(s) 430
Kzo9I GATC 1 cut(s) 768
LguI GCTCTTC 2 cut(s) 41, 309
LmnI GCTCC 2 cut(s) 256, 368
LpnPI CCDG 6 cut(s) 112, 384, 416, 460, 495, 683
Lsp1109I GCAGC 2 cut(s) 88, 91
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 68, 383
MaeIII GTNAC 4 cut(s) 63, 343, 442, 577
MalI GATC 1 cut(s) 770
MboI GATC 1 cut(s) 768
MboII GAAGA 4 cut(s) 53, 58, 296, 446
MfeI CAATTG 1 cut(s) 216
MhlI GDGCHC 2 cut(s) 261, 365
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 7 cut(s) 20, 54, 216, 279, 492, 621, 642
MluNI TGGCCA 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 5 cut(s) 214, 247, 366, 708, 733
Mox20I TGGCCA 1 cut(s) 187
MscI TGGCCA 1 cut(s) 187
MseI TTAA 4 cut(s) 240, 389, 513, 654
MslI CAYNNNNRTG 2 cut(s) 425, 633
Msp20I TGGCCA 1 cut(s) 187
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 2 cut(s) 447, 482
MunI CAATTG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 101, 221, 487
NdeII GATC 1 cut(s) 768
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 3 cut(s) 63, 343, 577
NspV TTCGAA 1 cut(s) 460
PciSI GCTCTTC 2 cut(s) 41, 309
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 4 cut(s) 13, 16, 103, 106
PsiI TTATAA 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 328, 647, 667
RsaI GTAC 3 cut(s) 381, 554, 686
RsaNI GTAC 3 cut(s) 380, 553, 685
RseI CAYNNNNRTG 2 cut(s) 425, 633
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 2 cut(s) 41, 309
SaqAI TTAA 4 cut(s) 240, 389, 513, 654
SatI GCNGC 4 cut(s) 12, 15, 102, 105
Sau3AI GATC 1 cut(s) 768
Sau96I GGNCC 3 cut(s) 328, 647, 667
ScaI AGTACT 1 cut(s) 381
SduI GDGCHC 2 cut(s) 261, 365
SetI ASST 5 cut(s) 33, 177, 261, 350, 577
SfaNI GCATC 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 3 cut(s) 328, 647, 667
SmiMI CAYNNNNRTG 2 cut(s) 425, 633
SmlI CTYRAG 3 cut(s) 176, 388, 737
SmoI CTYRAG 3 cut(s) 176, 388, 737
Sse9I AATT 7 cut(s) 20, 54, 216, 279, 492, 621, 642
SspI AATATT 1 cut(s) 710
SspMI CTAG 2 cut(s) 68, 383
SstI GAGCTC 1 cut(s) 261
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 460, 679
TasI AATT 7 cut(s) 20, 54, 216, 279, 492, 621, 642
TatI WGTACW 3 cut(s) 379, 552, 684
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 4 cut(s) 240, 389, 513, 654
Tru9I TTAA 4 cut(s) 240, 389, 513, 654
TscAI CASTG 3 cut(s) 144, 154, 760
TseFI GTSAC 3 cut(s) 63, 343, 577
TseI GCWGC 4 cut(s) 11, 14, 101, 104
Tsp45I GTSAC 3 cut(s) 63, 343, 577
TspDTI ATGAA 2 cut(s) 17, 305
TspGWI ACGGA 2 cut(s) 348, 717
TspRI CASTG 3 cut(s) 144, 154, 760
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 3 cut(s) 328, 647, 667
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 68, 383
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.