FvH4_6g13280

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000451
Physical Location & Seq
Forward (+)
8075428 .. 8077141
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13280.t1

Sequence Viewer

Length: 480 bp
ATGCGTTTAAGACCTCCAAATGTTCAAGAAATTGCGAGGGACGACCCTTTTCAAATCCCTGAAAATTTCCTTGTAGTAACAAACGAAGGAGACGAGCCAAAGAGTGCGGACACAAATCATGATCTTTCTTCTGAGATTCCTATCATTGATTTCTCTCTGCTCGTAGCTGGGCACAAGGAGGAGCTTAACAAGCTGGACAAAGCTTGCGAGGAATGGGGGTTCTTTCTGCTGGTAAAACACGGAATAGCAGCACAAGTGTTGCAGGAAATGAAGGATGGTGCGGCGAAGTTCTTCGATCTTCCGTTAGAGGAAAAGAATAAAATCGAAATGCCATCAGATGAGTTTCAAGGGTATGGGCAAGCCTATGCGCTCTCTGAGGGGCAAACCATGGACTGGTCCGACGCATTATTTCTCACCGTCTATCCATCCCAATACAGAAATCCTAGGTTTTGGCCAACCACACCAAACGGATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

4.59

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 46 - 153 3.6e-30 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AciI CCGC 2 cut(s) 107, 281
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 4 cut(s) 26, 53, 347, 475
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 167, 184, 193, 203
AluI AGCT 4 cut(s) 167, 184, 193, 203
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 290
AspA2I CCTAGG 1 cut(s) 443
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 396
AvrII CCTAGG 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 454
BbvI GCAGC 1 cut(s) 260
BccI CCATC 3 cut(s) 269, 340, 433
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 444
BisI GCNGC 2 cut(s) 249, 282
BlnI CCTAGG 1 cut(s) 443
BlsI GCNGC 2 cut(s) 250, 283
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 387, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 387, 443
BseGI GGATG 2 cut(s) 280, 425
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 123, 366
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 454
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 121, 295
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 107, 281
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 124, 367
BspHI TCATGA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 387, 443
BssMI GATC 2 cut(s) 121, 295
BssT1I CCWWGG 2 cut(s) 387, 443
Bst4CI ACNGT 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 205, 360
BstDEI CTNAG 2 cut(s) 132, 375
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 280, 425
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 124, 298
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 121, 295
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 280, 425
Cac8I GCNNGC 2 cut(s) 205, 360
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 396
CseI GACGC 1 cut(s) 410
CviAII CATG 2 cut(s) 119, 388
CviJI RGCY 7 cut(s) 97, 167, 184, 193, 203, 362, 454
CviKI_1 RGCY 7 cut(s) 97, 167, 184, 193, 203, 362, 454
DdeI CTNAG 2 cut(s) 132, 375
DpnI GATC 2 cut(s) 123, 297
DpnII GATC 2 cut(s) 121, 295
EaeI YGGCCR 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 387, 443
Eco47I GGWCC 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 387, 443
ErhI CCWWGG 2 cut(s) 387, 443
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 2 cut(s) 122, 391
FaiI YATR 4 cut(s) 120, 354, 366, 389
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 118, 387
Fnu4HI GCNGC 2 cut(s) 249, 282
FokI GGATG 2 cut(s) 287, 412
Fsp4HI GCNGC 2 cut(s) 249, 282
FspBI CTAG 1 cut(s) 444
GlaI GCGC 1 cut(s) 369
GluI GCNGC 2 cut(s) 249, 282
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 454
HgaI GACGC 1 cut(s) 410
HhaI GCGC 1 cut(s) 370
Hin1II CATG 2 cut(s) 122, 391
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 2 cut(s) 136, 471
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 133, 337, 376, 400
Hpy188III TCNNGA 2 cut(s) 26, 119
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 80, 265
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 132, 375
Hsp92II CATG 2 cut(s) 122, 391
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 121, 295
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 72, 153, 179, 215, 248, 379
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 123, 297
MboI GATC 2 cut(s) 121, 295
MboII GAAGA 3 cut(s) 120, 283, 290
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 454
MluCI AATT 2 cut(s) 30, 64
MluNI TGGCCA 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 6 cut(s) 24, 30, 172, 202, 301, 370
Mox20I TGGCCA 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 290
MscI TGGCCA 1 cut(s) 454
MseI TTAA 2 cut(s) 8, 186
Msp20I TGGCCA 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 190
NcoI CCATGG 1 cut(s) 387
NdeII GATC 2 cut(s) 121, 295
NlaIII CATG 2 cut(s) 122, 391
PagI TCATGA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 136, 471
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 2 cut(s) 250, 283
PspFI CCCAGC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 8, 186
SatI GCNGC 2 cut(s) 249, 282
Sau3AI GATC 2 cut(s) 121, 295
Sau96I GGNCC 1 cut(s) 396
SduI GDGCHC 1 cut(s) 174
SetI ASST 6 cut(s) 16, 169, 186, 195, 205, 449
SinI GGWCC 1 cut(s) 396
Sse9I AATT 2 cut(s) 30, 64
SsiI CCGC 2 cut(s) 107, 281
SspMI CTAG 1 cut(s) 444
StyI CCWWGG 2 cut(s) 387, 443
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 294, 324
TasI AATT 2 cut(s) 30, 64
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 2 cut(s) 136, 471
Tru1I TTAA 2 cut(s) 8, 186
Tru9I TTAA 2 cut(s) 8, 186
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 2 cut(s) 255, 291
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.