Rmu_sc0000350.1_g000011

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000350.1
OG0000451
Physical Location & Seq
Forward (+)
35320 .. 35879
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000350.1_g000011.1.cds

Sequence Viewer

Length: 357 bp
atggggatggagaaggatgctcttctcggactgcatcaagagttgctccgacctctatctgcggcctactatcctcagtgctcaatgcatgacaaaatatggagtaatgggaagtacaagagcattgaacacagagttgtaacaaacgatagcaaggcgaggatctcttatgcaacctattatttagcacatccaaatgcggaaattgaacccctttatcaaatggttctcaagtcaccggggtcccttccgttgaaatttaagaaagtcacctatgaggattatctgagccaagccaagaagatgctatctgaaaggaaggcacttggcattgaagttgccaagattgcaagttaa

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

9.26

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 200
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 4 cut(s) 128, 209, 256, 335
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 228, 262
AvaII GGWCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 83
BcnI CCSGG 1 cut(s) 240
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 244, 245
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 7, 43, 294
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 12, 22, 190
BseMII CTCAG 2 cut(s) 89, 278
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 2 cut(s) 62, 200
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 88, 279
BspLI GGNNCC 2 cut(s) 244, 245
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 75, 287
BstF5I GGATG 3 cut(s) 12, 22, 190
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 3 cut(s) 12, 22, 190
BtsIMutI CAGTG 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 65, 291, 296
CviKI_1 RGCY 3 cut(s) 65, 291, 296
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 75, 287
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 90
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 90, 100, 171, 276
FaqI GGGAC 1 cut(s) 229
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 19, 29, 177
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 239
Hin1II CATG 1 cut(s) 92
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 228, 262
Hpy188I TCNGA 4 cut(s) 29, 50, 288, 313
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 7, 257, 313
HpyCH4V TGCA 4 cut(s) 34, 88, 173, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 75, 287
Hsp92II CATG 1 cut(s) 92
KflI GGGWCCC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 1 cut(s) 252
LweI GCATC 3 cut(s) 7, 43, 294
MaeIII GTNAC 3 cut(s) 139, 234, 268
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 14, 313
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 2 cut(s) 204, 257
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 63, 84, 153, 271
Mph1103I ATGCAT 1 cut(s) 90
MseI TTAA 2 cut(s) 261, 355
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 162
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 244, 245
NmuCI GTSAC 2 cut(s) 234, 268
NsiI ATGCAT 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 244, 245
PspPI GGNCC 1 cut(s) 243
PspPPI RGGWCCY 1 cut(s) 243
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 261, 355
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 83
SetI ASST 3 cut(s) 55, 179, 275
SfaNI GCATC 3 cut(s) 7, 43, 294
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 204, 257
SsiI CCGC 2 cut(s) 62, 200
StyD4I CCNGG 1 cut(s) 238
TasI AATT 2 cut(s) 204, 257
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 261, 355
Tru9I TTAA 2 cut(s) 261, 355
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 234, 268
Tsp45I GTSAC 2 cut(s) 234, 268
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.