Prupe.6G258900_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000451
Physical Location & Seq
Reverse (-)
25040707 .. 25042908
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G258900.1

Sequence Viewer

Length: 1113 bp
ATGGGTTCATACACAGATGTAGCATTGATTCATGAGGAGGTTGCAGTTGCACCAACTTTTGGATCGTCTCTGCCGGTACCAAATGTTCAAGAAATAGTAAAGAGTGACCCTTTGCATGTCCCTGAAAGATACCTTATTAAAAATCAAGAGGACATGCCAAAGGATGCAGATCATACATGTAATCTTTCTTCTGAAATTCCTACAATTGATTTCTCTCTGCTCTCAAGAGGACATAAGGAGGAGCTAACCAAACTTGATCTGGCTTGCAAAGAATGGGGCTTTTTCCAGATGGTAAATCATGGAGTGGCAACAGAAGTGTTGCAGGGCATGAAGGATGCTGCAGCAAAGTTCTTTGAACTTCCTGTAGAAGAGAAGAATAAAGTTGCTATGACATCAGACGACATACAAGGCTACGGGCATGCGTATGTGGTTTCAGAAGAGCAGATACTGGATTGGTCTGATTTACTTTTTCTTATCGTTTACCCGTCTCAGTACAGAAAGCTTAAGTTTTGGCCAACCACACCAGAGGAATACAAGGAGGCTATTGAGGCATATTCTATTGAAGTTAAAAGAGTTGGAGAGGAGCTCATAAGGTATATATCTCTAATTATGGGGATGGAAAAGGATGCTCTTCTTGCACTACATCAAGAGTTGGTCCAAGGTGTGCTTGTGAACTACTATCCACCATGTTGCATGCCTGATAAAGTACTAGGCAAAAGTCCACACTCTGACACAAGCACCATAACCATACTCATGCAAGAAGACAATGTAACCGGATTACAGATTCGAAAAGAAGGAGAATGGGTGCCGGTGAAGCCAATTCCAAACGCTCTCGTTGTGAATGTGGGAGATGTTGTTGAGATATGGAGCAATGGAAAGTACAAAAGCATTGAGCACAGAGCTGTGACAACTGAAAGCAGGGCGAGGCTATCTTATGCAACATTTCTTTTCCCACATGATGATGTTGAAGTGGAACCATTTGATCATATGGTGGAGTCTCCAGGGTCCCTTCGGATGTACAAGAAAGTTAGATATGGAGACTATCTGAGGCAATCCTTGAAGAGGAAAATGGAGGGGAAGGCACACACTGATGCGGCGAAGACTGCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

371

Amino Acids

41.91

Weight (kDa)

5.25

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 76, 805
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 1 cut(s) 1094
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 5 cut(s) 78, 494, 708, 881, 1019
AfiI CCNNNNNNNGG 2 cut(s) 59, 1062
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 5 cut(s) 89, 356, 563, 968, 1060
AjnI CCWGG 1 cut(s) 1000
AluBI AGCT 4 cut(s) 244, 502, 586, 902
AluI AGCT 4 cut(s) 244, 502, 586, 902
Alw21I GWGCWC 2 cut(s) 588, 897
Alw26I GTCTC 4 cut(s) 72, 492, 1002, 1032
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 448
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 338, 341
ApoI RAATTY 1 cut(s) 195
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 655, 1005
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 1 cut(s) 787
AvaII GGWCC 2 cut(s) 655, 1005
BalI TGGCCA 1 cut(s) 514
BanI GGYRCC 2 cut(s) 76, 805
BanII GRGCYC 1 cut(s) 588
BarI GAAGNNNNNNTAC 4 cut(s) 172, 204, 429, 461
BbsI GAAGAC 2 cut(s) 768, 1106
Bbv12I GWGCWC 2 cut(s) 588, 897
BbvI GCAGC 2 cut(s) 325, 353
BccI CCATC 2 cut(s) 283, 610
BciT130I CCWGG 1 cut(s) 1002
BclI TGATCA 1 cut(s) 982
BcoDI GTCTC 4 cut(s) 72, 492, 1002, 1032
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 2 cut(s) 339, 363
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 3 cut(s) 339, 342, 1095
BlsI GCNGC 3 cut(s) 340, 343, 1096
BmcAI AGTACT 1 cut(s) 708
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 2 cut(s) 655, 1005
BmgT120I GGNCC 2 cut(s) 655, 1005
BmiI GGNNCC 5 cut(s) 78, 807, 975, 1006, 1007
BmrFI CCNGG 1 cut(s) 1002
BmsI GCATC 4 cut(s) 154, 325, 616, 1081
BpiI GAAGAC 2 cut(s) 768, 1106
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpmI CTGGAG 1 cut(s) 984
Bpu14I TTCGAA 1 cut(s) 787
BpuEI CTTGAG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 658, 1001
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 4 cut(s) 789, 819, 840, 870
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 1062
Bse118I RCCGGY 2 cut(s) 73, 808
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 877
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 1002
BseDI CCNNGG 2 cut(s) 658, 1001
BseGI GGATG 5 cut(s) 169, 340, 621, 631, 1020
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 59, 1062
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 2 cut(s) 503, 1037
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 3 cut(s) 50, 254, 596
BseXI GCAGC 2 cut(s) 325, 353
BshFI GGCC 1 cut(s) 514
BshNI GGYRCC 2 cut(s) 76, 805
BsiHKAI GWGCWC 2 cut(s) 588, 897
BsiSI CCGG 3 cut(s) 74, 774, 809
BslFI GGGAC 2 cut(s) 104, 991
BslI CCNNNNNNNGG 2 cut(s) 59, 1062
BsmAI GTCTC 4 cut(s) 72, 492, 1002, 1032
BsmBI CGTCTC 2 cut(s) 72, 492
BsmFI GGGAC 2 cut(s) 104, 991
BsnI GGCC 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 787
Bsp1286I GDGCHC 2 cut(s) 588, 897
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 4 cut(s) 62, 169, 256, 982
BspACI CCGC 1 cut(s) 1094
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 2 cut(s) 502, 1038
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 5 cut(s) 78, 807, 975, 1006, 1007
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 2 cut(s) 432, 636
BspT104I TTCGAA 1 cut(s) 787
BspT107I GGYRCC 2 cut(s) 76, 805
BspTI CTTAAG 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 2 cut(s) 73, 808
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 2 cut(s) 73, 808
BssECI CCNNGG 2 cut(s) 658, 1001
BssMI GATC 4 cut(s) 62, 169, 256, 982
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 1002
Bst6I CTCTTC 4 cut(s) 363, 432, 636, 1055
BstAFI CTTAAG 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 1017
BstBI TTCGAA 1 cut(s) 787
BstC8I GCNNGC 3 cut(s) 265, 420, 695
BstDEI CTNAG 2 cut(s) 489, 1046
BstENI CCTNNNNNAGG 1 cut(s) 1060
BstF5I GGATG 5 cut(s) 169, 340, 621, 631, 1020
BstKTI GATC 4 cut(s) 65, 172, 259, 985
BstMAI GTCTC 4 cut(s) 72, 492, 1002, 1032
BstMBI GATC 4 cut(s) 62, 169, 256, 982
BstMWI GCNNNNNNNGC 4 cut(s) 548, 635, 814, 1103
BstNI CCWGG 1 cut(s) 1002
BstNSI RCATGY 5 cut(s) 119, 157, 180, 422, 697
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 2 cut(s) 339, 363
BstV1I GCAGC 2 cut(s) 325, 353
BstV2I GAAGAC 2 cut(s) 768, 1106
BsuRI GGCC 1 cut(s) 514
BtsCI GGATG 5 cut(s) 169, 340, 621, 631, 1020
BtsIMutI CAGTG 1 cut(s) 1086
Cac8I GCNNGC 3 cut(s) 265, 420, 695
CaiI CAGNNNCTG 1 cut(s) 448
CciI TCATGA 1 cut(s) 31
Cfr10I RCCGGY 2 cut(s) 73, 808
Cfr13I GGNCC 2 cut(s) 655, 1005
Csp6I GTAC 5 cut(s) 77, 493, 707, 880, 1018
CviQI GTAC 5 cut(s) 77, 493, 707, 880, 1018
DdeI CTNAG 2 cut(s) 489, 1046
DpnI GATC 4 cut(s) 64, 171, 258, 984
DpnII GATC 4 cut(s) 62, 169, 256, 982
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 4 cut(s) 363, 432, 636, 1055
EarI CTCTTC 4 cut(s) 363, 432, 636, 1055
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 655, 1005
Eco53kI GAGCTC 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 1060
EcoO109I RGGNCCY 1 cut(s) 1005
EcoRII CCWGG 1 cut(s) 1000
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 2 cut(s) 72, 492
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 2 cut(s) 104, 991
FauNDI CATATG 1 cut(s) 987
FbaI TGATCA 1 cut(s) 982
Fnu4HI GCNGC 3 cut(s) 339, 342, 1095
FokI GGATG 5 cut(s) 176, 347, 628, 638, 1027
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 3 cut(s) 339, 342, 1095
FspBI CTAG 1 cut(s) 710
GluI GCNGC 3 cut(s) 339, 342, 1095
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 1 cut(s) 514
HapII CCGG 3 cut(s) 74, 774, 809
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 3 cut(s) 28, 784, 995
HpaII CCGG 3 cut(s) 74, 774, 809
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 3 cut(s) 481, 673, 722
Hpy188I TCNGA 7 cut(s) 193, 397, 436, 460, 730, 1014, 1047
Hpy188III TCNNGA 6 cut(s) 32, 89, 146, 225, 286, 647
Hpy8I GTNNAC 3 cut(s) 481, 673, 722
HpyAV CCTTC 4 cut(s) 325, 788, 1019, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 548, 635, 814, 1103
HpyF3I CTNAG 2 cut(s) 489, 1046
KflI GGGWCCC 1 cut(s) 1005
KpnI GGTACC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 4 cut(s) 62, 169, 256, 982
LguI GCTCTTC 2 cut(s) 432, 636
LmnI GCTCC 3 cut(s) 241, 583, 867
Lsp1109I GCAGC 2 cut(s) 325, 353
LweI GCATC 4 cut(s) 154, 325, 616, 1081
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 3 cut(s) 104, 769, 904
MalI GATC 4 cut(s) 64, 171, 258, 984
MboI GATC 4 cut(s) 62, 169, 256, 982
MboII GAAGA 8 cut(s) 180, 380, 385, 449, 623, 773, 1072, 1111
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 588, 897
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 4 cut(s) 195, 204, 606, 819
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 1 cut(s) 1004
MmeI TCCRAC 1 cut(s) 556
Mox20I TGGCCA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 514
MseI TTAA 4 cut(s) 138, 504, 567, 1111
MslI CAYNNNNRTG 4 cut(s) 423, 752, 960, 1089
Msp20I TGGCCA 1 cut(s) 514
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 3 cut(s) 74, 774, 809
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 4 cut(s) 548, 635, 814, 1103
NdeI CATATG 1 cut(s) 987
NdeII GATC 4 cut(s) 62, 169, 256, 982
NlaIV GGNNCC 5 cut(s) 78, 807, 975, 1006, 1007
NmuCI GTSAC 2 cut(s) 104, 904
NspI RCATGY 5 cut(s) 119, 157, 180, 422, 697
NspV TTCGAA 1 cut(s) 787
PaeI GCATGC 2 cut(s) 422, 697
PagI TCATGA 1 cut(s) 31
PciI ACATGT 1 cut(s) 176
PciSI GCTCTTC 2 cut(s) 432, 636
PfeI GAWTC 2 cut(s) 28, 784
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 3 cut(s) 340, 343, 1096
PleI GAGTC 1 cut(s) 1003
PpsI GAGTC 1 cut(s) 1003
PpuMI RGGWCCY 1 cut(s) 1005
PscI ACATGT 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 1005
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 5 cut(s) 78, 807, 975, 1006, 1007
PspPI GGNCC 2 cut(s) 655, 1005
PspPPI RGGWCCY 1 cut(s) 1005
PsrI GAACNNNNNNTAC 2 cut(s) 69, 101
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 448
RsaI GTAC 5 cut(s) 78, 494, 708, 881, 1019
RsaNI GTAC 5 cut(s) 77, 493, 707, 880, 1018
RseI CAYNNNNRTG 4 cut(s) 423, 752, 960, 1089
SacI GAGCTC 1 cut(s) 588
SapI GCTCTTC 2 cut(s) 432, 636
SaqAI TTAA 4 cut(s) 138, 504, 567, 1111
SatI GCNGC 3 cut(s) 339, 342, 1095
Sau3AI GATC 4 cut(s) 62, 169, 256, 982
Sau96I GGNCC 2 cut(s) 655, 1005
ScaI AGTACT 1 cut(s) 708
SchI GAGTC 1 cut(s) 1004
ScrFI CCNGG 1 cut(s) 1002
SduI GDGCHC 2 cut(s) 588, 897
SetI ASST 8 cut(s) 42, 135, 246, 504, 588, 596, 664, 904
SfaNI GCATC 4 cut(s) 154, 325, 616, 1081
SfcI CTRYAG 2 cut(s) 339, 363
SfuI TTCGAA 1 cut(s) 787
SinI GGWCC 2 cut(s) 655, 1005
SmiMI CAYNNNNRTG 4 cut(s) 423, 752, 960, 1089
SmlI CTYRAG 2 cut(s) 223, 503
SmoI CTYRAG 2 cut(s) 223, 503
SphI GCATGC 2 cut(s) 422, 697
Sse9I AATT 4 cut(s) 195, 204, 606, 819
SsiI CCGC 1 cut(s) 1094
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 1000
StyI CCWWGG 1 cut(s) 658
TaqI TCGA 1 cut(s) 787
TasI AATT 4 cut(s) 195, 204, 606, 819
TatI WGTACW 4 cut(s) 492, 706, 879, 1017
TauI GCSGC 1 cut(s) 1097
TfiI GAWTC 2 cut(s) 28, 784
Tru1I TTAA 4 cut(s) 138, 504, 567, 1111
Tru9I TTAA 4 cut(s) 138, 504, 567, 1111
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 2 cut(s) 104, 904
TseI GCWGC 2 cut(s) 338, 341
Tsp45I GTSAC 2 cut(s) 104, 904
TspDTI ATGAA 2 cut(s) 20, 344
TspRI CASTG 1 cut(s) 1093
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 655, 1005
XagI CCTNNNNNAGG 1 cut(s) 1060
XapI RAATTY 1 cut(s) 195
XceI RCATGY 5 cut(s) 119, 157, 180, 422, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 1 cut(s) 710
ZrmI AGTACT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.