Rh3CG147900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000451
Physical Location & Seq
Forward (+)
12334845 .. 12336624
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG147900.1

Sequence Viewer

Length: 735 bp
ATGTCAACAGCAAAAGGCACACGAGAAGGCTATGGACAAGCCTTTGTGGTTACTGAAGAGCAGACCCTCGACTGGTCCGACGCACTGGTTCTCAATCTTTACCCATCCCAGATAAGGAACCTTGAGTATTGGCCAACCACACCAAGGGGATTCAAGGAGGCTATTGAGGCATATGCTAGTGAAGTTAAAAGAGTTGGAGAGGAGATCCTTAGATCTCTGTCTTTAACTATGGGGATGGAGAAGGATGTTCTTCTTGGACTGCATCAAGATTTGGCAGCAGCATTGCGCATAAACTACATTCCTCCATGCTCTATGCCTGATAAAGTACTAGGTCTAAGTGCACATGCGGATGCAGGCACCATTATTGTACTTATGCAAGAAGATAATGTTATCGGATTACAGATTCGAAAACAAGGACAATGGGTGTCAGTCAAGCCGATTCCAAACTCTTTGGTTGTGAATGTTGGAGATGCTCTTGAGATATGGAGCAACGGGAAGTACAAAAGCATTGAACACAGAGCTGTGACAAACGAAAGCAAGGCAAGGATGTCTAATGCATCATTTATCTTTCCACATGTCGATGTGGAAATTGAGCCGTTCGATCATATACTGGAGTCATCAGGGACCATTCAGATGTATAAGAAGGTCAAATATGGAGATTATTTGATTCAATGCTTGAAGAGGAAAATGGAGGGGAAGGAACACACTCAAAATGCAAAATTAGGAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

244

Amino Acids

27.3

Weight (kDa)

6.1

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 94 - 191 2.6e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 1 cut(s) 347
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 4 cut(s) 327, 369, 500, 730
AfiI CCNNNNNNNGG 3 cut(s) 72, 114, 144
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 4 cut(s) 154, 512, 671, 679
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
Alw21I GWGCWC 1 cut(s) 343
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 275, 278
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 2 cut(s) 75, 624
AsuII TTCGAA 1 cut(s) 406
AvaII GGWCC 2 cut(s) 75, 624
BaeGI GKGCMC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 356
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 287, 290
BccI CCATC 2 cut(s) 112, 229
BceAI ACGGC 1 cut(s) 580
BfaI CTAG 2 cut(s) 177, 329
BglII AGATCT 1 cut(s) 212
BisI GCNGC 2 cut(s) 276, 279
BlsI GCNGC 2 cut(s) 277, 280
BmcAI AGTACT 2 cut(s) 327, 730
Bme18I GGWCC 2 cut(s) 75, 624
BmgT120I GGNCC 2 cut(s) 75, 624
BmiI GGNNCC 3 cut(s) 119, 358, 625
BmsI GCATC 4 cut(s) 271, 340, 460, 566
BpmI CTGGAG 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 2 cut(s) 143, 497
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 114, 144
Bse1I ACTGG 3 cut(s) 77, 90, 615
Bse3DI GCAATG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 5 cut(s) 104, 240, 250, 355, 552
BseLI CCNNNNNNNGG 3 cut(s) 72, 114, 144
BseMI GCAATG 1 cut(s) 281
BseNI ACTGG 3 cut(s) 77, 90, 615
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 2 cut(s) 287, 290
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 343
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 3 cut(s) 72, 114, 144
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 3 cut(s) 204, 212, 601
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 119, 358, 625
BspPI GGATC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 3 cut(s) 77, 90, 615
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 3 cut(s) 204, 212, 601
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 51, 674
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 209, 335
BstF5I GGATG 5 cut(s) 104, 240, 250, 355, 552
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 207, 215, 604
BstMBI GATC 3 cut(s) 204, 212, 601
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 2 cut(s) 347, 578
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 287, 290
BstX2I RGATCY 2 cut(s) 204, 212
BstYI RGATCY 2 cut(s) 204, 212
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 5 cut(s) 104, 240, 250, 355, 552
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 75, 624
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 326, 368, 499, 729
CviAII CATG 3 cut(s) 306, 344, 575
CviJI RGCY 7 cut(s) 30, 41, 133, 161, 436, 521, 595
CviKI_1 RGCY 7 cut(s) 30, 41, 133, 161, 436, 521, 595
CviQI GTAC 4 cut(s) 326, 368, 499, 729
DdeI CTNAG 2 cut(s) 209, 335
DpnI GATC 3 cut(s) 206, 214, 603
DpnII GATC 3 cut(s) 204, 212, 601
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 51, 674
EarI CTCTTC 2 cut(s) 51, 674
Eco130I CCWWGG 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 75, 624
Eco57I CTGAAG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 3 cut(s) 309, 347, 578
FaqI GGGAC 1 cut(s) 637
FatI CATG 3 cut(s) 305, 343, 574
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 276, 279
FokI GGATG 5 cut(s) 91, 247, 257, 362, 559
Fsp4HI GCNGC 2 cut(s) 276, 279
FspBI CTAG 2 cut(s) 177, 329
FspI TGCGCA 1 cut(s) 287
GlaI GCGC 1 cut(s) 287
GluI GCNGC 2 cut(s) 276, 279
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 133
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 309, 347, 578
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 150, 403, 439, 614, 667
Hpy166II GTNNAC 2 cut(s) 6, 341
Hpy188I TCNGA 3 cut(s) 79, 395, 633
Hpy188III TCNNGA 2 cut(s) 266, 476
Hpy8I GTNNAC 2 cut(s) 6, 341
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 20, 235, 637, 691
HpyCH4V TGCA 6 cut(s) 262, 341, 353, 376, 557, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 209, 335
Hsp92II CATG 3 cut(s) 309, 347, 578
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 204, 212, 601
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 486
LpnPI CCDG 7 cut(s) 58, 71, 122, 330, 339, 596, 606
Lsp1109I GCAGC 2 cut(s) 287, 290
LweI GCATC 4 cut(s) 271, 340, 460, 566
MaeI CTAG 2 cut(s) 177, 329
MaeIII GTNAC 2 cut(s) 49, 523
MalI GATC 3 cut(s) 206, 214, 603
MboI GATC 3 cut(s) 204, 212, 601
MboII GAAGA 4 cut(s) 68, 242, 392, 691
MflI RGATCY 2 cut(s) 204, 212
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 2 cut(s) 588, 719
MluNI TGGCCA 1 cut(s) 133
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 3 cut(s) 102, 175, 445
MnlI CCTC 7 cut(s) 77, 151, 160, 193, 312, 675, 685
Mox20I TGGCCA 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 559
MscI TGGCCA 1 cut(s) 133
MseI TTAA 3 cut(s) 186, 224, 733
MslI CAYNNNNRTG 3 cut(s) 348, 579, 632
Msp20I TGGCCA 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeI CATATG 1 cut(s) 172
NdeII GATC 3 cut(s) 204, 212, 601
NlaIII CATG 3 cut(s) 309, 347, 578
NlaIV GGNNCC 3 cut(s) 119, 358, 625
NmuCI GTSAC 1 cut(s) 523
NsbI TGCGCA 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 347, 578
NspV TTCGAA 1 cut(s) 406
PciI ACATGT 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 4 cut(s) 150, 403, 439, 667
PkrI GCNGC 2 cut(s) 277, 280
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PscI ACATGT 1 cut(s) 574
PspN4I GGNNCC 3 cut(s) 119, 358, 625
PspPI GGNCC 2 cut(s) 75, 624
PsuI RGATCY 2 cut(s) 204, 212
RsaI GTAC 4 cut(s) 327, 369, 500, 730
RsaNI GTAC 4 cut(s) 326, 368, 499, 729
RseI CAYNNNNRTG 3 cut(s) 348, 579, 632
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 186, 224, 733
SatI GCNGC 2 cut(s) 276, 279
Sau3AI GATC 3 cut(s) 204, 212, 601
Sau96I GGNCC 2 cut(s) 75, 624
ScaI AGTACT 2 cut(s) 327, 730
SchI GAGTC 1 cut(s) 623
SduI GDGCHC 1 cut(s) 343
SetI ASST 4 cut(s) 123, 334, 523, 648
SfaNI GCATC 4 cut(s) 271, 340, 460, 566
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 2 cut(s) 75, 624
SmiMI CAYNNNNRTG 3 cut(s) 348, 579, 632
SmlI CTYRAG 2 cut(s) 122, 476
SmoI CTYRAG 2 cut(s) 122, 476
Sse9I AATT 2 cut(s) 588, 719
SsiI CCGC 1 cut(s) 347
SspMI CTAG 2 cut(s) 177, 329
StyI CCWWGG 1 cut(s) 143
TaqI TCGA 4 cut(s) 69, 406, 579, 600
TasI AATT 2 cut(s) 588, 719
TatI WGTACW 4 cut(s) 325, 367, 498, 728
TfiI GAWTC 4 cut(s) 150, 403, 439, 667
Tru1I TTAA 3 cut(s) 186, 224, 733
Tru9I TTAA 3 cut(s) 186, 224, 733
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 2 cut(s) 275, 278
Tsp45I GTSAC 1 cut(s) 523
TspRI CASTG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 75, 624
XceI RCATGY 2 cut(s) 347, 578
XspI CTAG 2 cut(s) 177, 329
ZrmI AGTACT 2 cut(s) 327, 730
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.