Rroxscaffold_6G00414740

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000451
Physical Location & Seq
Reverse (-)
37016031 .. 37021430
5400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414740.1

Sequence Viewer

Length: 2031 bp
ATGGGATCAAACTCAGCCCTCTATGCCCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAGGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGAATGAAAAGGACATTGCAAACGACGCAGACTTGTGTCCTCAACTTTCCTCTGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCAAGGAATGGGGATTCTTTCAGATGGTGAATCATGGTGTGGCGACAGAATTGATGAAGGACATGAAGGATTCTGCGCAGAAGTTCTTTGAACTTCCATTAGAAGAAAAGAACAAAATTGCTATACCACCAAATGACATACAAGGCTATGGCCATTCCCATTCGGATCAGATCCTGGATTGGTCCGACAAACTTGTTCTTATCGTTCACCCACACCACTATAGAAAGCTCGAGGTCTGGCCGGCCACTCCATTCAAGGAGGCTATTGAGGCATATTCTAGTGAAGTTAAAAGAGTTGGAGAGGAGCTCTTAAGGTTTATGTCTTTGATCATGGGGATGGAGAAGGATGCTTTTCTTGGTCTACATCAAGAGTTGGTGCAACCCATGTCGGTAGCCTACTATCCTCAATGCTACATGCCTGATAAAGTACTAGGACTTGGCCCTCACTCAGACAAAGGCACCATAGGCGTACTTATGCAAGAAGACGATGTAACGGGACTACAAATCAAGCACGAAGGAAAATGGGTACCGATCAAGCCAATTCCCGACACTTTAGTAGTGAATGTTGGAGATATGATGGAGATATGGAGTAATGGGAAATACAAGAGCATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATATCTTATTCAACGTTTTATTTACCACGTCATGATGTGGAAATTGAACCCCTTGATCAAATGGTACTCGAGTCGCCGGAGTCCCTTCCGATGTACAAAAAGGTCAGATATGGAGATTATCTAAGGCAAACTAAGCATATGAGATTTGAAGGGAAGGCGCATGTCATTAAGGTGCCTGAAAGATACATCAGGGATGAAAAGGACATTGCAAACGATGCCGGTTTGTGCACTCAGCTTTCCTCCGAGGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCGAGGAATGGGGTTTCTTTCAGATGGTAAATCATGGAGTGGCAACAGAAATAACGAAGGGCTTGAAGGATTCAGCGCTGAAGTTCTTCGAACTTCCATTAGAAGAGAAGAACAAAATTGCTATGCCACCAAATGACATACAAGGCTATGGTCATTCCCATGTGGATCAGGTCCTGGATTGGTCTGACAAACTTGTTCTTGTTGTTTACCCACAACAGCATAGAAAGCTCGATGTTTGGCCACCAAGTCCATTCAAGGAGGCTATTGAGACATATTCTAGTGAACTTAGACGAATTGGAGAGGAGCTCCTGAGGTCTGTCTCTTTAATAATGGGGATGGAGAAGGATGCACTCCTCCTGTTACATCAAGAGTTGGTACAACCTATGTCTGTGGCGTACTATCCTCCCTGCTTCATGCCTGATAAAGTAATGGGTCTCAGTCCACATTCAGACAAAGGCACCTTGGGTGTACTTATGCAAGAAGAAGATGTACCGGGACTCCAAATCAAACACGAAGAAAAATGGGTACCGATCAAGCCATTACCCAATGCTTTCGTTGTGAATGTTGGAGATATTATCGAGATTTGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTGGTAACAAACAAAAGCAAGGCGAGGATATCTTATTCAACCTTTTATATACCACATCGAAATGTTGATATTGAACCCCTTGATCAAATGGTATTTGAGTCTCCAGGGTCCCTTCCATTGTACAAGAAAGTCACTTACGGAGATTATCTGAAGCAAACCCAGAAGATGAAAAAAGAAGGGAAGGCACATGTCACCGAAGTTGCCAAGATTGCCAATTAA

Protein Analysis

676

Amino Acids

77.28

Weight (kDa)

5.62

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 157 1.9e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 204 - 300 7.3e-30 2OG-Fe(II) oxygenase superfamily
DIOX_N PF14226 375 - 479 3e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 525 - 621 1e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
Acc65I GGTACC 2 cut(s) 751, 1717
AccB1I GGYRCC 6 cut(s) 82, 683, 751, 1045, 1649, 1717
AccI GTMKAC 1 cut(s) 586
AciI CCGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 887
AclWI GGATC 4 cut(s) 13, 391, 399, 1365
AcoI YGGCCR 4 cut(s) 376, 464, 468, 1430
AcuI CTGAAG 2 cut(s) 1292, 1982
AdeI CACNNNGTG 1 cut(s) 1813
AfeI AGCGCT 1 cut(s) 1269
AfiI CCNNNNNNNGG 1 cut(s) 79
AflII CTTAAG 1 cut(s) 535
AflIII ACRYGT 1 cut(s) 1999
AjiI CACGTC 1 cut(s) 902
AjnI CCWGG 5 cut(s) 219, 399, 1185, 1365, 1915
AluBI AGCT 9 cut(s) 205, 214, 454, 532, 1108, 1171, 1180, 1420, 1498
AluI AGCT 9 cut(s) 205, 214, 454, 532, 1108, 1171, 1180, 1420, 1498
Alw21I GWGCWC 3 cut(s) 534, 1103, 1500
Alw26I GTCTC 4 cut(s) 1454, 1516, 1631, 1917
Alw44I GTGCAC 1 cut(s) 1099
AlwI GGATC 4 cut(s) 13, 391, 399, 1365
AlwNI CAGNNNCTG 2 cut(s) 400, 1366
Ama87I CYCGRG 2 cut(s) 455, 941
Aor51HI AGCGCT 1 cut(s) 1269
AoxI GGCC 5 cut(s) 376, 464, 468, 664, 1430
ApaLI GTGCAC 1 cut(s) 1099
Asp700I GAANNNNTTC 1 cut(s) 1277
Asp718I GGTACC 2 cut(s) 751, 1717
AspLEI GCGC 3 cut(s) 304, 1033, 1270
AspS9I GGNCC 6 cut(s) 217, 408, 665, 1183, 1363, 1920
AsuC2I CCSGG 1 cut(s) 1686
AsuHPI GGTGA 4 cut(s) 73, 265, 425, 1996
AsuII TTCGAA 1 cut(s) 1281
AvaI CYCGRG 2 cut(s) 455, 941
AvaII GGWCC 5 cut(s) 217, 408, 1183, 1363, 1920
AxyI CCTNAGG 1 cut(s) 1502
BaeGI GKGCMC 1 cut(s) 1103
BaeI ACNNNNGTAYC 2 cut(s) 929, 962
BalI TGGCCA 2 cut(s) 378, 1432
BanI GGYRCC 6 cut(s) 82, 683, 751, 1045, 1649, 1717
BanII GRGCYC 2 cut(s) 534, 1500
BarI GAAGNNNNNNTAC 2 cut(s) 1665, 1697
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 3 cut(s) 534, 1103, 1500
BccI CCATC 7 cut(s) 170, 244, 556, 796, 1136, 1210, 1522
BciT130I CCWGG 5 cut(s) 221, 401, 1187, 1367, 1917
BclI TGATCA 3 cut(s) 552, 928, 1894
BcnI CCSGG 1 cut(s) 1686
BcoDI GTCTC 4 cut(s) 1454, 1516, 1631, 1917
BfaI CTAG 3 cut(s) 504, 656, 1470
BfmI CTRYAG 1 cut(s) 445
BfoI RGCGCY 1 cut(s) 1271
BfrI CTTAAG 1 cut(s) 535
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 6 cut(s) 221, 401, 1187, 1367, 1686, 1917
Bme18I GGWCC 5 cut(s) 217, 408, 1183, 1363, 1920
BmeT110I CYCGRG 2 cut(s) 455, 941
BmgBI CACGTC 1 cut(s) 902
BmgT120I GGNCC 6 cut(s) 217, 408, 665, 1183, 1363, 1920
BmrFI CCNGG 6 cut(s) 221, 401, 1187, 1367, 1686, 1917
BmsI GCATC 3 cut(s) 562, 1078, 1528
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 4 cut(s) 516, 548, 1482, 1514
BpmI CTGGAG 1 cut(s) 1899
Bpu14I TTCGAA 1 cut(s) 1281
BpuMI CCSGG 1 cut(s) 1686
Bsa29I ATCGAT 2 cut(s) 168, 1134
BsaI GGTCTC 1 cut(s) 1631
BsaJI CCNNGG 3 cut(s) 1116, 1653, 1916
BsaXI ACNNNNNCTCC 2 cut(s) 1674, 1704
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 2 cut(s) 466, 1091
Bse21I CCTNAGG 1 cut(s) 1502
Bse3DI GCAATG 2 cut(s) 114, 1077
BseBI CCWGG 5 cut(s) 221, 401, 1187, 1367, 1917
BseCI ATCGAT 2 cut(s) 168, 1134
BseDI CCNNGG 3 cut(s) 1116, 1653, 1916
BseGI GGATG 5 cut(s) 567, 577, 1072, 1533, 1543
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 114, 1077
BseMII CTCAG 6 cut(s) 27, 144, 687, 1118, 1493, 1642
BseRI GAGGAG 7 cut(s) 79, 215, 542, 1133, 1181, 1508, 1535
BseSI GKGCMC 1 cut(s) 1103
BshFI GGCC 5 cut(s) 378, 466, 470, 666, 1432
BshNI GGYRCC 6 cut(s) 82, 683, 751, 1045, 1649, 1717
BshVI ATCGAT 2 cut(s) 168, 1134
BsiHKAI GWGCWC 3 cut(s) 534, 1103, 1500
BsiHKCI CYCGRG 2 cut(s) 455, 941
BsiSI CCGG 4 cut(s) 467, 950, 1092, 1685
BslFI GGGAC 4 cut(s) 735, 940, 1701, 1906
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 1454, 1516, 1631, 1917
BsmFI GGGAC 4 cut(s) 735, 940, 1701, 1906
BsnI GGCC 5 cut(s) 378, 466, 470, 666, 1432
Bso31I GGTCTC 1 cut(s) 1631
BsoBI CYCGRG 2 cut(s) 455, 941
Bsp119I TTCGAA 1 cut(s) 1281
Bsp1286I GDGCHC 3 cut(s) 534, 1103, 1500
Bsp1407I TGTACA 2 cut(s) 966, 1932
Bsp143I GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
BspACI CCGC 1 cut(s) 35
BspANI GGCC 5 cut(s) 378, 466, 470, 666, 1432
BspCNI CTCAG 6 cut(s) 26, 145, 686, 1117, 1494, 1641
BspDI ATCGAT 2 cut(s) 168, 1134
BspHI TCATGA 1 cut(s) 904
BspPI GGATC 4 cut(s) 13, 391, 399, 1365
BspT104I TTCGAA 1 cut(s) 1281
BspT107I GGYRCC 6 cut(s) 82, 683, 751, 1045, 1649, 1717
BspTI CTTAAG 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 1631
BsrDI GCAATG 2 cut(s) 114, 1077
BsrFI RCCGGY 2 cut(s) 466, 1091
BsrGI TGTACA 2 cut(s) 966, 1932
BssAI RCCGGY 2 cut(s) 466, 1091
BssECI CCNNGG 3 cut(s) 1116, 1653, 1916
BssMI GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
BssT1I CCWWGG 1 cut(s) 1653
Bst2UI CCWGG 5 cut(s) 221, 401, 1187, 1367, 1917
Bst6I CTCTTC 1 cut(s) 1290
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstAUI TGTACA 2 cut(s) 966, 1932
BstBI TTCGAA 1 cut(s) 1281
BstC8I GCNNGC 3 cut(s) 226, 468, 1192
BstDEI CTNAG 9 cut(s) 13, 153, 673, 995, 1005, 1104, 1478, 1502, 1628
BstF5I GGATG 5 cut(s) 567, 577, 1072, 1533, 1543
BstH2I RGCGCY 1 cut(s) 1271
BstHHI GCGC 3 cut(s) 304, 1033, 1270
BstKTI GATC 9 cut(s) 8, 394, 399, 555, 759, 931, 1360, 1725, 1897
BstMAI GTCTC 4 cut(s) 1454, 1516, 1631, 1917
BstMBI GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
BstNI CCWGG 5 cut(s) 221, 401, 1187, 1367, 1917
BstNSI RCATGY 3 cut(s) 643, 1037, 2003
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 6 cut(s) 219, 399, 1185, 1365, 1684, 1915
BstSFI CTRYAG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 1103
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 2 cut(s) 168, 1134
Bsu36I CCTNAGG 1 cut(s) 1502
BsuRI GGCC 5 cut(s) 378, 466, 470, 666, 1432
BsuTUI ATCGAT 2 cut(s) 168, 1134
BtrI CACGTC 1 cut(s) 902
BtsCI GGATG 5 cut(s) 567, 577, 1072, 1533, 1543
Cac8I GCNNGC 3 cut(s) 226, 468, 1192
CaiI CAGNNNCTG 2 cut(s) 400, 1366
CciI TCATGA 1 cut(s) 904
CfoI GCGC 3 cut(s) 304, 1033, 1270
Cfr10I RCCGGY 2 cut(s) 466, 1091
Cfr13I GGNCC 6 cut(s) 217, 408, 665, 1183, 1363, 1920
ClaI ATCGAT 2 cut(s) 168, 1134
CseI GACGC 1 cut(s) 134
DdeI CTNAG 9 cut(s) 13, 153, 673, 995, 1005, 1104, 1478, 1502, 1628
DpnI GATC 9 cut(s) 7, 393, 398, 554, 758, 930, 1359, 1724, 1896
DpnII GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
DraIII CACNNNGTG 1 cut(s) 1813
EaeI YGGCCR 4 cut(s) 376, 464, 468, 1430
Eam1104I CTCTTC 1 cut(s) 1290
EarI CTCTTC 1 cut(s) 1290
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 2 cut(s) 532, 1498
Eco130I CCWWGG 1 cut(s) 1653
Eco24I GRGCYC 2 cut(s) 534, 1500
Eco31I GGTCTC 1 cut(s) 1631
Eco32I GATATC 2 cut(s) 876, 1842
Eco47I GGWCC 5 cut(s) 217, 408, 1183, 1363, 1920
Eco47III AGCGCT 1 cut(s) 1269
Eco53kI GAGCTC 2 cut(s) 532, 1498
Eco57I CTGAAG 2 cut(s) 1292, 1982
Eco81I CCTNAGG 1 cut(s) 1502
Eco88I CYCGRG 2 cut(s) 455, 941
EcoICRI GAGCTC 2 cut(s) 532, 1498
EcoO109I RGGNCCY 2 cut(s) 1363, 1920
EcoRII CCWGG 5 cut(s) 219, 399, 1185, 1365, 1915
EcoRV GATATC 2 cut(s) 876, 1842
EcoT14I CCWWGG 1 cut(s) 1653
EcoT38I GRGCYC 2 cut(s) 534, 1500
ErhI CCWWGG 1 cut(s) 1653
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 1155, 1187
FaqI GGGAC 4 cut(s) 735, 940, 1701, 1906
FauNDI CATATG 1 cut(s) 1011
FbaI TGATCA 3 cut(s) 552, 928, 1894
FblI GTMKAC 1 cut(s) 586
FokI GGATG 5 cut(s) 574, 584, 1079, 1540, 1550
FriOI GRGCYC 2 cut(s) 534, 1500
FseI GGCCGGCC 1 cut(s) 470
FspBI CTAG 3 cut(s) 504, 656, 1470
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 3 cut(s) 303, 1032, 1269
GsuI CTGGAG 1 cut(s) 1899
HaeII RGCGCY 1 cut(s) 1271
HaeIII GGCC 5 cut(s) 378, 466, 470, 666, 1432
HapII CCGG 4 cut(s) 467, 950, 1092, 1685
HgaI GACGC 1 cut(s) 134
HhaI GCGC 3 cut(s) 304, 1033, 1270
Hin6I GCGC 3 cut(s) 302, 1031, 1268
HinP1I GCGC 3 cut(s) 302, 1031, 1268
HinfI GANTC 8 cut(s) 240, 256, 296, 944, 953, 1262, 1689, 1910
HpaII CCGG 4 cut(s) 467, 950, 1092, 1685
HphI GGTGA 4 cut(s) 73, 265, 425, 1996
Hpy166II GTNNAC 7 cut(s) 433, 587, 1101, 1399, 1475, 1634, 1661
Hpy188III TCNNGA 8 cut(s) 53, 100, 593, 770, 905, 1501, 1559, 1771
Hpy8I GTNNAC 7 cut(s) 433, 587, 1101, 1399, 1475, 1634, 1661
Hpy99I CGWCG 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 887, 901
HpyCH4V TGCA 8 cut(s) 119, 228, 604, 703, 1082, 1101, 1541, 1669
HpyF3I CTNAG 9 cut(s) 13, 153, 673, 995, 1005, 1104, 1478, 1502, 1628
HpySE526I ACGT 2 cut(s) 887, 901
HspAI GCGC 3 cut(s) 302, 1031, 1268
KflI GGGWCCC 1 cut(s) 1920
KpnI GGTACC 2 cut(s) 755, 1721
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Ksp22I TGATCA 3 cut(s) 552, 928, 1894
Kzo9I GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
LmnI GCTCC 5 cut(s) 202, 529, 1168, 1495, 1503
LweI GCATC 3 cut(s) 562, 1078, 1528
MaeI CTAG 3 cut(s) 504, 656, 1470
MaeII ACGT 2 cut(s) 887, 901
MaeIII GTNAC 7 cut(s) 68, 715, 850, 1551, 1816, 1942, 2002
MalI GATC 9 cut(s) 7, 393, 398, 554, 758, 930, 1359, 1724, 1896
MboI GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
MboII GAAGA 9 cut(s) 341, 719, 1270, 1307, 1312, 1685, 1688, 1718, 1987
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 3 cut(s) 534, 1103, 1500
MlsI TGGCCA 2 cut(s) 378, 1432
MluCI AATT 7 cut(s) 275, 342, 765, 915, 1308, 1485, 2026
MluNI TGGCCA 2 cut(s) 378, 1432
MlyI GAGTC 4 cut(s) 953, 962, 1683, 1919
MmeI TCCRAC 4 cut(s) 435, 502, 772, 1738
Mox20I TGGCCA 2 cut(s) 378, 1432
MroNI GCCGGC 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 1277
MscI TGGCCA 2 cut(s) 378, 1432
MseI TTAA 5 cut(s) 513, 536, 1041, 1517, 2029
MslI CAYNNNNRTG 4 cut(s) 560, 1043, 1350, 1872
Msp20I TGGCCA 2 cut(s) 378, 1432
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 4 cut(s) 467, 950, 1092, 1685
MspR9I CCNGG 6 cut(s) 221, 401, 1187, 1367, 1686, 1917
MvaI CCWGG 5 cut(s) 221, 401, 1187, 1367, 1917
NaeI GCCGGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 1686
NdeI CATATG 1 cut(s) 1011
NdeII GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
NgoMIV GCCGGC 1 cut(s) 466
NmuCI GTSAC 3 cut(s) 68, 1942, 2002
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 3 cut(s) 643, 1037, 2003
NspV TTCGAA 1 cut(s) 1281
PaeR7I CTCGAG 2 cut(s) 455, 941
PagI TCATGA 1 cut(s) 904
PciI ACATGT 1 cut(s) 1999
PdiI GCCGGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 1277
PfeI GAWTC 4 cut(s) 240, 256, 296, 1262
PfoI TCCNGGA 2 cut(s) 399, 1365
PleI GAGTC 4 cut(s) 952, 961, 1683, 1918
PpsI GAGTC 4 cut(s) 952, 961, 1683, 1918
PpuMI RGGWCCY 2 cut(s) 1363, 1920
PscI ACATGT 1 cut(s) 1999
PshAI GACNNNNGTC 1 cut(s) 135
Psp124BI GAGCTC 2 cut(s) 534, 1500
Psp1406I AACGTT 1 cut(s) 887
Psp5II RGGWCCY 2 cut(s) 1363, 1920
Psp6I CCWGG 5 cut(s) 219, 399, 1185, 1365, 1915
PspGI CCWGG 5 cut(s) 219, 399, 1185, 1365, 1915
PspPI GGNCC 6 cut(s) 217, 408, 665, 1183, 1363, 1920
PspPPI RGGWCCY 2 cut(s) 1363, 1920
PspXI VCTCGAGB 2 cut(s) 455, 941
PstNI CAGNNNCTG 2 cut(s) 400, 1366
PsuI RGATCY 1 cut(s) 396
RigI GGCCGGCC 1 cut(s) 470
RseI CAYNNNNRTG 4 cut(s) 560, 1043, 1350, 1872
SacI GAGCTC 2 cut(s) 534, 1500
SaqAI TTAA 5 cut(s) 513, 536, 1041, 1517, 2029
Sau3AI GATC 9 cut(s) 5, 391, 396, 552, 756, 928, 1357, 1722, 1894
Sau96I GGNCC 6 cut(s) 217, 408, 665, 1183, 1363, 1920
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 4 cut(s) 953, 962, 1683, 1919
ScrFI CCNGG 6 cut(s) 221, 401, 1187, 1367, 1686, 1917
SduI GDGCHC 3 cut(s) 534, 1103, 1500
SfaNI GCATC 3 cut(s) 562, 1078, 1528
SfcI CTRYAG 1 cut(s) 445
Sfr274I CTCGAG 2 cut(s) 455, 941
SfuI TTCGAA 1 cut(s) 1281
SinI GGWCC 5 cut(s) 217, 408, 1183, 1363, 1920
SlaI CTCGAG 2 cut(s) 455, 941
SmiMI CAYNNNNRTG 4 cut(s) 560, 1043, 1350, 1872
SmlI CTYRAG 3 cut(s) 455, 535, 941
SmoI CTYRAG 3 cut(s) 455, 535, 941
Sse9I AATT 7 cut(s) 275, 342, 765, 915, 1308, 1485, 2026
SsiI CCGC 1 cut(s) 35
SspMI CTAG 3 cut(s) 504, 656, 1470
SstI GAGCTC 2 cut(s) 534, 1500
StyD4I CCNGG 6 cut(s) 219, 399, 1185, 1365, 1684, 1915
StyI CCWWGG 1 cut(s) 1653
TaiI ACGT 2 cut(s) 890, 904
TaqI TCGA 8 cut(s) 168, 456, 942, 1134, 1281, 1422, 1770, 1870
TasI AATT 7 cut(s) 275, 342, 765, 915, 1308, 1485, 2026
TatI WGTACW 5 cut(s) 652, 966, 1660, 1791, 1932
TfiI GAWTC 4 cut(s) 240, 256, 296, 1262
Tru1I TTAA 5 cut(s) 513, 536, 1041, 1517, 2029
Tru9I TTAA 5 cut(s) 513, 536, 1041, 1517, 2029
TseFI GTSAC 3 cut(s) 68, 1942, 2002
Tsp45I GTSAC 3 cut(s) 68, 1942, 2002
TspDTI ATGAA 6 cut(s) 120, 296, 305, 1083, 1594, 1994
TspGWI ACGGA 1 cut(s) 1965
Vha464I CTTAAG 1 cut(s) 535
VneI GTGCAC 1 cut(s) 1099
VpaK11BI GGWCC 5 cut(s) 217, 408, 1183, 1363, 1920
XceI RCATGY 3 cut(s) 643, 1037, 2003
XhoI CTCGAG 2 cut(s) 455, 941
XmiI GTMKAC 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 1277
XspI CTAG 3 cut(s) 504, 656, 1470
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.