Rw3G011900

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
11763193 .. 11765262
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011900.1

Sequence Viewer

Length: 1065 bp
ATGGGATCAAACTCAGCCCTCTATGCCCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAGGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGAATGAAAAGGACATTGCAAACGATGCAGACTTGTGTCCTCAACTTTCCTCTGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCAAGGAATGGGGATTCTTTCACATGGTGAATCATGGTGTGGCGACAGAATTGATGAAGGGCATGAAGGATTATGCGCAGAAGTTCTTTGAACTTCCATTAGAAGAAAAGAACAAAATTGCTATACCACCAAATGACATACAAGGCTATGGCCATTCCCATTCGGATCAGATCCTGGATTGGTCCGACAAACTTGTTCTTATCGTTCACCCACACCACTATAGAAAACTCGAGGTCTGGCCGGCCACTCCATTCAAGGAGGCTATTGAGGCATATTCTAGTGAAGTTAAAAGAGTTGGAGAGGAGCTCTTAAGGTTTATGTCTTTGATCATGGGGATGGAGAAGGATGCTTTTCTTGGGCTACATCAAGAGTTGGTGCAACCCATGTCGGTAGCCTACTATCCTCAATGCTACTTGCCTGATAAAGTACTAGGACTTGGCCCTCACTCAGACAAAGGGACCATAGGCATACTTATGCAAGAAGACGATGTAACGGGACTACAAATCAAGCACGAAGGAAAATGGGTACCGATCAAGCCAATTCCCGACACTTTAGTAGTGAATGTTGGAGACATGATGGAGATATGGAGTAATGGGAAATACAAGAGTATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATATCTTGTTCAACGTTTTATTTACCACGTCATGATGTGGAAATTGAACCCCTTGATCAAATGGTACTCGAGTCGCCGGGGTCCCTTCCGATGTACAAAAAGGTCAAATATGGAGATTATCTGAGGCAAACTAAGCATATGAGATTTGAAGGGAAGGCGCATGTCATTAAGGTTGCTAAGCTTAATTGGTAG

Protein Analysis

354

Amino Acids

40.5

Weight (kDa)

5.93

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 157 8.2e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 204 - 300 2.2e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 2 cut(s) 82, 751
AciI CCGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 887
AclWI GGATC 3 cut(s) 13, 391, 399
AcoI YGGCCR 3 cut(s) 376, 464, 468
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 4 cut(s) 654, 753, 939, 968
AfiI CCNNNNNNNGG 1 cut(s) 79
AflII CTTAAG 1 cut(s) 535
AgsI TTSAA 7 cut(s) 53, 317, 481, 839, 885, 920, 1022
AjiI CACGTC 1 cut(s) 902
AjnI CCWGG 2 cut(s) 219, 399
AloI GAACNNNNNNTCC 2 cut(s) 865, 897
AluBI AGCT 4 cut(s) 205, 214, 532, 1054
AluI AGCT 4 cut(s) 205, 214, 532, 1054
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 13, 391, 399
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 2 cut(s) 455, 941
AoxI GGCC 4 cut(s) 376, 464, 468, 664
Asp718I GGTACC 1 cut(s) 751
AspLEI GCGC 2 cut(s) 304, 1033
AspS9I GGNCC 5 cut(s) 217, 408, 665, 684, 954
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 3 cut(s) 73, 265, 425
AvaI CYCGRG 2 cut(s) 455, 941
AvaII GGWCC 4 cut(s) 217, 408, 684, 954
BaeI ACNNNNGTAYC 2 cut(s) 929, 962
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 2 cut(s) 82, 751
BanII GRGCYC 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 534
BccI CCATC 3 cut(s) 170, 556, 796
BciT130I CCWGG 2 cut(s) 221, 401
BclI TGATCA 2 cut(s) 552, 928
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 2 cut(s) 504, 656
BfmI CTRYAG 1 cut(s) 445
BfrI CTTAAG 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 1050
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 3 cut(s) 221, 401, 951
Bme18I GGWCC 4 cut(s) 217, 408, 684, 954
BmeT110I CYCGRG 2 cut(s) 455, 941
BmgBI CACGTC 1 cut(s) 902
BmgT120I GGNCC 5 cut(s) 217, 408, 665, 684, 954
BmiI GGNNCC 6 cut(s) 84, 159, 685, 753, 955, 956
BmrFI CCNGG 3 cut(s) 221, 401, 951
BmsI GCATC 2 cut(s) 115, 562
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 516, 548
Bpu1102I GCTNAGC 1 cut(s) 1050
BpuMI CCSGG 1 cut(s) 951
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 950
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 221, 401
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 950
BseGI GGATG 2 cut(s) 567, 577
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 4 cut(s) 27, 144, 687, 986
BseRI GAGGAG 3 cut(s) 79, 215, 542
BshFI GGCC 4 cut(s) 378, 466, 470, 666
BshNI GGYRCC 2 cut(s) 82, 751
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 534
BsiHKCI CYCGRG 2 cut(s) 455, 941
BsiSI CCGG 2 cut(s) 467, 950
BslFI GGGAC 3 cut(s) 697, 735, 940
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 3 cut(s) 697, 735, 940
BsnI GGCC 4 cut(s) 378, 466, 470, 666
BsoBI CYCGRG 2 cut(s) 455, 941
Bsp1286I GDGCHC 1 cut(s) 534
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 6 cut(s) 5, 391, 396, 552, 756, 928
Bsp1720I GCTNAGC 1 cut(s) 1050
BspACI CCGC 1 cut(s) 35
BspANI GGCC 4 cut(s) 378, 466, 470, 666
BspCNI CTCAG 4 cut(s) 26, 145, 686, 987
BspDI ATCGAT 1 cut(s) 168
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 6 cut(s) 84, 159, 685, 753, 955, 956
BspPI GGATC 3 cut(s) 13, 391, 399
BspT107I GGYRCC 2 cut(s) 82, 751
BspTI CTTAAG 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 966
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 950
BssMI GATC 6 cut(s) 5, 391, 396, 552, 756, 928
Bst2UI CCWGG 2 cut(s) 221, 401
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 226, 468
BstDEI CTNAG 6 cut(s) 13, 153, 673, 995, 1005, 1050
BstF5I GGATG 2 cut(s) 567, 577
BstHHI GCGC 2 cut(s) 304, 1033
BstKTI GATC 6 cut(s) 8, 394, 399, 555, 759, 931
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 6 cut(s) 5, 391, 396, 552, 756, 928
BstMWI GCNNNNNNNGC 5 cut(s) 23, 125, 211, 494, 1006
BstNI CCWGG 2 cut(s) 221, 401
BstNSI RCATGY 1 cut(s) 1037
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 3 cut(s) 219, 399, 949
BstSFI CTRYAG 1 cut(s) 445
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 4 cut(s) 378, 466, 470, 666
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 1 cut(s) 902
BtsCI GGATG 2 cut(s) 567, 577
Cac8I GCNNGC 2 cut(s) 226, 468
CaiI CAGNNNCTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 904
CfoI GCGC 2 cut(s) 304, 1033
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 5 cut(s) 217, 408, 665, 684, 954
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 4 cut(s) 653, 752, 938, 967
CviAII CATG 9 cut(s) 30, 250, 260, 289, 556, 610, 799, 905, 1034
CviQI GTAC 4 cut(s) 653, 752, 938, 967
DdeI CTNAG 6 cut(s) 13, 153, 673, 995, 1005, 1050
DpnI GATC 6 cut(s) 7, 393, 398, 554, 758, 930
DpnII GATC 6 cut(s) 5, 391, 396, 552, 756, 928
DraIII CACNNNGTG 1 cut(s) 253
EaeI YGGCCR 3 cut(s) 376, 464, 468
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco32I GATATC 1 cut(s) 876
Eco47I GGWCC 4 cut(s) 217, 408, 684, 954
Eco53kI GAGCTC 1 cut(s) 532
Eco88I CYCGRG 2 cut(s) 455, 941
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 954
EcoRII CCWGG 2 cut(s) 219, 399
EcoRV GATATC 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 9 cut(s) 33, 253, 263, 292, 559, 613, 802, 908, 1037
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 3 cut(s) 697, 735, 940
FatI CATG 9 cut(s) 29, 249, 259, 288, 555, 609, 798, 904, 1033
FauNDI CATATG 1 cut(s) 1011
FbaI TGATCA 2 cut(s) 552, 928
FokI GGATG 2 cut(s) 574, 584
FriOI GRGCYC 1 cut(s) 534
FseI GGCCGGCC 1 cut(s) 470
FspBI CTAG 2 cut(s) 504, 656
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 2 cut(s) 303, 1032
HaeIII GGCC 4 cut(s) 378, 466, 470, 666
HapII CCGG 2 cut(s) 467, 950
HhaI GCGC 2 cut(s) 304, 1033
Hin1II CATG 9 cut(s) 33, 253, 263, 292, 559, 613, 802, 908, 1037
Hin6I GCGC 2 cut(s) 302, 1031
HinP1I GCGC 2 cut(s) 302, 1031
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 3 cut(s) 240, 256, 944
HpaII CCGG 2 cut(s) 467, 950
HphI GGTGA 3 cut(s) 73, 265, 425
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 7 cut(s) 154, 391, 396, 412, 676, 963, 996
Hpy188III TCNNGA 5 cut(s) 53, 100, 593, 770, 905
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 7 cut(s) 277, 286, 562, 734, 968, 1016, 1021
HpyCH4IV ACGT 2 cut(s) 887, 901
HpyCH4V TGCA 5 cut(s) 119, 128, 228, 604, 703
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 125, 211, 494, 1006
HpyF3I CTNAG 6 cut(s) 13, 153, 673, 995, 1005, 1050
HpySE526I ACGT 2 cut(s) 887, 901
Hsp92II CATG 9 cut(s) 33, 253, 263, 292, 559, 613, 802, 908, 1037
HspAI GCGC 2 cut(s) 302, 1031
KflI GGGWCCC 1 cut(s) 954
KpnI GGTACC 1 cut(s) 755
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 552, 928
Kzo9I GATC 6 cut(s) 5, 391, 396, 552, 756, 928
LmnI GCTCC 2 cut(s) 202, 529
LweI GCATC 2 cut(s) 115, 562
MaeI CTAG 2 cut(s) 504, 656
MaeII ACGT 2 cut(s) 887, 901
MaeIII GTNAC 3 cut(s) 68, 715, 850
MalI GATC 6 cut(s) 7, 393, 398, 554, 758, 930
MboI GATC 6 cut(s) 5, 391, 396, 552, 756, 928
MboII GAAGA 2 cut(s) 341, 719
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 5 cut(s) 275, 342, 765, 915, 1057
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 3 cut(s) 435, 502, 772
Mox20I TGGCCA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 466
MscI TGGCCA 1 cut(s) 378
MseI TTAA 4 cut(s) 513, 536, 1041, 1056
MslI CAYNNNNRTG 2 cut(s) 560, 698
Msp20I TGGCCA 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 2 cut(s) 467, 950
MspR9I CCNGG 3 cut(s) 221, 401, 951
MvaI CCWGG 2 cut(s) 221, 401
MwoI GCNNNNNNNGC 5 cut(s) 23, 125, 211, 494, 1006
NaeI GCCGGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 951
NdeI CATATG 1 cut(s) 1011
NdeII GATC 6 cut(s) 5, 391, 396, 552, 756, 928
NgoMIV GCCGGC 1 cut(s) 466
NlaIII CATG 9 cut(s) 33, 253, 263, 292, 559, 613, 802, 908, 1037
NlaIV GGNNCC 6 cut(s) 84, 159, 685, 753, 955, 956
NmuCI GTSAC 1 cut(s) 68
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 1 cut(s) 1037
PaeR7I CTCGAG 2 cut(s) 455, 941
PagI TCATGA 1 cut(s) 904
PdiI GCCGGC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 240, 256
PfoI TCCNGGA 1 cut(s) 399
PleI GAGTC 1 cut(s) 952
PpsI GAGTC 1 cut(s) 952
PpuMI RGGWCCY 1 cut(s) 954
PshAI GACNNNNGTC 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 534
Psp1406I AACGTT 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 219, 399
PspGI CCWGG 2 cut(s) 219, 399
PspN4I GGNNCC 6 cut(s) 84, 159, 685, 753, 955, 956
PspPI GGNCC 5 cut(s) 217, 408, 665, 684, 954
PspPPI RGGWCCY 1 cut(s) 954
PspXI VCTCGAGB 2 cut(s) 455, 941
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 396
RigI GGCCGGCC 1 cut(s) 470
RsaI GTAC 4 cut(s) 654, 753, 939, 968
RsaNI GTAC 4 cut(s) 653, 752, 938, 967
RseI CAYNNNNRTG 2 cut(s) 560, 698
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 4 cut(s) 513, 536, 1041, 1056
Sau3AI GATC 6 cut(s) 5, 391, 396, 552, 756, 928
Sau96I GGNCC 5 cut(s) 217, 408, 665, 684, 954
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 3 cut(s) 221, 401, 951
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 2 cut(s) 115, 562
SfcI CTRYAG 1 cut(s) 445
Sfr274I CTCGAG 2 cut(s) 455, 941
SinI GGWCC 4 cut(s) 217, 408, 684, 954
SlaI CTCGAG 2 cut(s) 455, 941
SmiMI CAYNNNNRTG 2 cut(s) 560, 698
SmlI CTYRAG 3 cut(s) 455, 535, 941
SmoI CTYRAG 3 cut(s) 455, 535, 941
Sse9I AATT 5 cut(s) 275, 342, 765, 915, 1057
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 504, 656
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 219, 399, 949
TaiI ACGT 2 cut(s) 890, 904
TaqI TCGA 3 cut(s) 168, 456, 942
TasI AATT 5 cut(s) 275, 342, 765, 915, 1057
TatI WGTACW 2 cut(s) 652, 966
TfiI GAWTC 2 cut(s) 240, 256
Tru1I TTAA 4 cut(s) 513, 536, 1041, 1056
Tru9I TTAA 4 cut(s) 513, 536, 1041, 1056
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 120, 296, 305
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 4 cut(s) 217, 408, 684, 954
XceI RCATGY 1 cut(s) 1037
XhoI CTCGAG 2 cut(s) 455, 941
XspI CTAG 2 cut(s) 504, 656
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.