RLG00000024599

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37367970 .. 37370147
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024599

Sequence Viewer

Length: 918 bp
ATGGGATCAAACTCAGCCCTCTATGACCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAGGAGTGACCCCTTTCAGGTGCCTGAAAGATACATCAGGGATGAAAAGGACATTGCAAACGATGCCGGTTTGTGCTCTCAGCTTTCCTCCGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCGAGGAATGGGGTTTCTTTCAGGTCCTGGATTGGTCTGACAAACTTGTTCTTGTTGTTTACCCACAACAGCATAGAAAGCTCGATGTTTGGCCACCAAGTCCATTCAAGGAGGCTATTGAGACATATTCTAGTGAACTTAAACGAATTGGAGAGGAGCTCCTGAAGTCTGTCTCTTTAATAATGGGGATGGAGAAGGATGCACTCCTCCGGTTACATCAAGAGTTGGTACAACCTATGTCTGTGGCGTACTATGCTCCCTGCTTCATGCCTGATAAAGTAATGGGTCTCAGTCCACATTCAGACAAAGGCACCTTGGGTGTACTTATGCAAGAAGAAGATGTACCGGGACTCCAAATCAAACACGAAGGAAAATGGGTACCGATCAAGCCATCGCCCAATGCTTTCGTTGTGAATGTTGGAGATATTATCGAGATTTGGAGTAATGGGAAGTACAAGAGCATTGAACACAGGGTGGTAACAAACAAAAGCAAGGCGAGGATATCTTATTCAACCTTTTATATACCACATCGAAATGTTGATATTGAACCCCTTGATCAAATGGTACTTGAGTCTCCCGGGTCCCTTCCATTGTACAAGAAAGTCACTTACGGAGATTATCTGAAGCAAACCCAGAAGATGAAAAAAGTAGGGAAGGCACATGTCACCGAAGTTGCCAAGATTGCCAATTAA

Protein Analysis

306

Amino Acids

34.57

Weight (kDa)

5.81

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 84 1e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 154 - 250 7.1e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 3 cut(s) 82, 536, 604
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 317
AcuI CTGAAG 2 cut(s) 410, 869
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 8 cut(s) 456, 476, 549, 570, 606, 680, 792, 821
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 886
AgsI TTSAA 5 cut(s) 53, 334, 692, 738, 773
AjnI CCWGG 2 cut(s) 219, 252
AluBI AGCT 5 cut(s) 145, 205, 214, 307, 385
AluI AGCT 5 cut(s) 145, 205, 214, 307, 385
Alw21I GWGCWC 2 cut(s) 140, 387
Alw26I GTCTC 4 cut(s) 341, 403, 518, 804
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 604
AspS9I GGNCC 3 cut(s) 217, 250, 807
AsuC2I CCSGG 3 cut(s) 573, 804, 805
AsuHPI GGTGA 2 cut(s) 73, 883
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 3 cut(s) 217, 250, 807
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BalI TGGCCA 1 cut(s) 319
BanI GGYRCC 3 cut(s) 82, 536, 604
BanII GRGCYC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
Bbv12I GWGCWC 2 cut(s) 140, 387
BccI CCATC 3 cut(s) 170, 409, 625
BciT130I CCWGG 2 cut(s) 221, 254
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 3 cut(s) 573, 804, 805
BcoDI GTCTC 4 cut(s) 341, 403, 518, 804
BfaI CTAG 1 cut(s) 357
Bme1390I CCNGG 5 cut(s) 221, 254, 573, 804, 805
Bme18I GGWCC 3 cut(s) 217, 250, 807
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 3 cut(s) 217, 250, 807
BmiI GGNNCC 6 cut(s) 84, 159, 538, 606, 808, 809
BmrFI CCNGG 5 cut(s) 221, 254, 573, 804, 805
BmsI GCATC 2 cut(s) 115, 415
BoxI GACNNNNGTC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpuEI CTTGAG 1 cut(s) 815
BpuMI CCSGG 3 cut(s) 573, 804, 805
Bsa29I ATCGAT 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 153, 540, 803
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 221, 254
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 153, 540, 803
BseGI GGATG 3 cut(s) 109, 420, 430
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 27, 155, 529
BseRI GAGGAG 4 cut(s) 79, 215, 395, 422
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 3 cut(s) 82, 536, 604
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 140, 387
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 4 cut(s) 129, 436, 572, 804
BslFI GGGAC 2 cut(s) 588, 793
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 341, 403, 518, 804
BsmFI GGGAC 2 cut(s) 588, 793
BsnI GGCC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 140, 387
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 3 cut(s) 5, 609, 781
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 3 cut(s) 26, 154, 528
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 6 cut(s) 84, 159, 538, 606, 808, 809
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 3 cut(s) 82, 536, 604
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 153, 540, 803
BssMI GATC 3 cut(s) 5, 609, 781
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 2 cut(s) 221, 254
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 13, 141, 515
BstF5I GGATG 3 cut(s) 109, 420, 430
BstKTI GATC 3 cut(s) 8, 612, 784
BstMAI GTCTC 4 cut(s) 341, 403, 518, 804
BstMBI GATC 3 cut(s) 5, 609, 781
BstMWI GCNNNNNNNGC 5 cut(s) 125, 211, 304, 479, 908
BstNI CCWGG 2 cut(s) 221, 254
BstNSI RCATGY 1 cut(s) 890
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 5 cut(s) 219, 252, 571, 802, 803
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 603
BtsCI GGATG 3 cut(s) 109, 420, 430
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 217, 250, 807
Cfr9I CCCGGG 1 cut(s) 803
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 8 cut(s) 455, 475, 548, 569, 605, 679, 791, 820
CviAII CATG 3 cut(s) 30, 493, 887
CviQI GTAC 8 cut(s) 455, 475, 548, 569, 605, 679, 791, 820
DdeI CTNAG 3 cut(s) 13, 141, 515
DpnI GATC 3 cut(s) 7, 611, 783
DpnII GATC 3 cut(s) 5, 609, 781
DraIII CACNNNGTG 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 317
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 3 cut(s) 217, 250, 807
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 410, 869
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 2 cut(s) 250, 807
EcoRII CCWGG 2 cut(s) 219, 252
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 3 cut(s) 33, 496, 890
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 588, 793
FatI CATG 3 cut(s) 29, 492, 886
FbaI TGATCA 1 cut(s) 781
FokI GGATG 3 cut(s) 116, 427, 437
FriOI GRGCYC 1 cut(s) 387
FspBI CTAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 319
HapII CCGG 4 cut(s) 129, 436, 572, 804
Hin1II CATG 3 cut(s) 33, 496, 890
HinfI GANTC 2 cut(s) 576, 797
HpaII CCGG 4 cut(s) 129, 436, 572, 804
HphI GGTGA 2 cut(s) 73, 883
Hpy166II GTNNAC 4 cut(s) 286, 362, 521, 548
Hpy188I TCNGA 4 cut(s) 154, 265, 529, 849
Hpy188III TCNNGA 4 cut(s) 53, 388, 446, 658
Hpy8I GTNNAC 4 cut(s) 286, 362, 521, 548
HpyAV CCTTC 4 cut(s) 415, 587, 821, 874
HpyCH4V TGCA 3 cut(s) 119, 428, 556
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 211, 304, 479, 908
HpyF3I CTNAG 3 cut(s) 13, 141, 515
Hsp92II CATG 3 cut(s) 33, 496, 890
KflI GGGWCCC 1 cut(s) 807
KpnI GGTACC 1 cut(s) 608
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 3 cut(s) 5, 609, 781
LmnI GCTCC 4 cut(s) 202, 382, 390, 487
LweI GCATC 2 cut(s) 115, 415
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 5 cut(s) 68, 438, 703, 829, 889
MalI GATC 3 cut(s) 7, 611, 783
MboI GATC 3 cut(s) 5, 609, 781
MboII GAAGA 3 cut(s) 572, 575, 874
MhlI GDGCHC 2 cut(s) 140, 387
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 2 cut(s) 372, 913
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 2 cut(s) 570, 806
MmeI TCCRAC 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 319
MseI TTAA 3 cut(s) 366, 404, 916
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 319
MspI CCGG 4 cut(s) 129, 436, 572, 804
MspR9I CCNGG 5 cut(s) 221, 254, 573, 804, 805
MvaI CCWGG 2 cut(s) 221, 254
MwoI GCNNNNNNNGC 5 cut(s) 125, 211, 304, 479, 908
NciI CCSGG 3 cut(s) 573, 804, 805
NdeII GATC 3 cut(s) 5, 609, 781
NlaIII CATG 3 cut(s) 33, 496, 890
NlaIV GGNNCC 6 cut(s) 84, 159, 538, 606, 808, 809
NmuCI GTSAC 3 cut(s) 68, 829, 889
NspI RCATGY 1 cut(s) 890
PciI ACATGT 1 cut(s) 886
PfoI TCCNGGA 1 cut(s) 252
PleI GAGTC 2 cut(s) 570, 805
PpsI GAGTC 2 cut(s) 570, 805
PpuMI RGGWCCY 2 cut(s) 250, 807
PscI ACATGT 1 cut(s) 886
PshAI GACNNNNGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 387
Psp5II RGGWCCY 2 cut(s) 250, 807
Psp6I CCWGG 2 cut(s) 219, 252
PspGI CCWGG 2 cut(s) 219, 252
PspN4I GGNNCC 6 cut(s) 84, 159, 538, 606, 808, 809
PspPI GGNCC 3 cut(s) 217, 250, 807
PspPPI RGGWCCY 2 cut(s) 250, 807
PstNI CAGNNNCTG 1 cut(s) 253
RsaI GTAC 8 cut(s) 456, 476, 549, 570, 606, 680, 792, 821
RsaNI GTAC 8 cut(s) 455, 475, 548, 569, 605, 679, 791, 820
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 366, 404, 916
Sau3AI GATC 3 cut(s) 5, 609, 781
Sau96I GGNCC 3 cut(s) 217, 250, 807
SchI GAGTC 2 cut(s) 570, 806
ScrFI CCNGG 5 cut(s) 221, 254, 573, 804, 805
SduI GDGCHC 2 cut(s) 140, 387
SfaNI GCATC 2 cut(s) 115, 415
SinI GGWCC 3 cut(s) 217, 250, 807
SmaI CCCGGG 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
Sse9I AATT 2 cut(s) 372, 913
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 5 cut(s) 219, 252, 571, 802, 803
StyI CCWWGG 1 cut(s) 540
TaqI TCGA 4 cut(s) 168, 309, 657, 757
TasI AATT 2 cut(s) 372, 913
TatI WGTACW 3 cut(s) 547, 678, 819
Tru1I TTAA 3 cut(s) 366, 404, 916
Tru9I TTAA 3 cut(s) 366, 404, 916
TseFI GTSAC 3 cut(s) 68, 829, 889
Tsp45I GTSAC 3 cut(s) 68, 829, 889
TspDTI ATGAA 3 cut(s) 120, 481, 881
TspGWI ACGGA 1 cut(s) 852
TspMI CCCGGG 1 cut(s) 803
VpaK11BI GGWCC 3 cut(s) 217, 250, 807
XceI RCATGY 1 cut(s) 890
XmaI CCCGGG 1 cut(s) 803
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.