Prupe.6G258700_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000451
Physical Location & Seq
Reverse (-)
25035362 .. 25037238
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G258700.1

Sequence Viewer

Length: 1068 bp
ATGAGTTCAACCCCTGATATAGCATTTGCACCAAATGTTCAAGAAATTGTGAGGAGTGACCCTTCGCAGATCCCTGAAAATTTCCTCATAATTAGGAATGAAGAAGAAGGCAAGTCAAATAATACTGCGGATACATGTCATCTTTCTTCTGAGATTCCTATTGTTGATCTTTCTCTGCTCTCAAGAGGACACAAGGAGGAGCTTAACAAACTAGACCAGGCTTGCAAAGAATGGGGATTCTTTCAGGTGGTAAATCATGGAGTGGCAACCGAAGTGTTGCAGGAAATGAAGGATGCTACGGCCAAGTTCTTTGAACTTCCGTTAGAAGAAAAGAACAAAATTCGCATGCCGTCGGACGACTTTCAAGGCTACGGCCAAGCCTATGCAGCTTCCCAAGGGCAGACACTGGACTGGTCTGACGCACTGTTTCTCAGTGTTTATCCATCCCACCATAGAAAGCTCAAGTTTTGGCCAACCTCACCAGAGGGATTCAAGGATGCTATTGAGGCATATTCAAGTGGAGTAAAAAGAGTTGGAGATGAGCTCCTAAGGTCTCTATCTTGCACTTTGGGGATGGAGAAGGATGCTCTTCTTAAACTACATCAAGAAGTGGTCCAAGTTTTGCGCGTGAACTACTATCCTACATGCCATATGCCTGACAAAGTGCTAGGTCTAAGTCCACACTCGGACACAGGCACCATAACCATACTCATGCAAGAAGACAATGTAACCGGATTGCAGATTAGAAAAGAAGGAGAATGGGTTCCCGTGAAGCCAATTCCAAACGCTCTCGTTGTCAATGTTGGAGATGTTATTGAGATTTTGAGTAATGGGAAGTACAAGAGCATTGAACATAGAGCTGTCACAACTGAAACCAAAGCGAGGATATCTTATGCATCATTTCTTTTGCCACATCTAGATGTGGAAGTTGAGCCGTTTGATCATATTGTGGAGGCATTGGGGACTCGGAGGTACAAGAAGGTCAAATATGGAGATTATCTAGGGAATTCCTTGAAGGGGAAACTTAAGGGCAAGGCACACATTGAAACAGCCAAGATCGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

356

Amino Acids

39.72

Weight (kDa)

5.87

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 695
AccII CGCG 1 cut(s) 627
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 3 cut(s) 300, 373, 470
AcsI RAATTY 3 cut(s) 79, 339, 1006
AfaI GTAC 2 cut(s) 839, 974
AfiI CCNNNNNNNGG 2 cut(s) 882, 1017
AflII CTTAAG 1 cut(s) 1025
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 9 cut(s) 9, 41, 314, 365, 493, 516, 851, 1015, 1046
AjnI CCWGG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
AluBI AGCT 5 cut(s) 202, 389, 460, 544, 860
AluI AGCT 5 cut(s) 202, 389, 460, 544, 860
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 406
AoxI GGCC 3 cut(s) 300, 373, 470
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 3 cut(s) 79, 339, 1006
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 471
AvaII GGWCC 1 cut(s) 613
AxyI CCTNAGG 1 cut(s) 548
BalI TGGCCA 1 cut(s) 472
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 398
BccI CCATC 2 cut(s) 451, 568
BceAI ACGGC 4 cut(s) 315, 334, 388, 919
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 940
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 4 cut(s) 212, 668, 917, 1001
BfrI CTTAAG 1 cut(s) 1025
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 697, 765
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 4 cut(s) 283, 487, 574, 905
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpuEI CTTGAG 2 cut(s) 166, 446
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 882, 1017
Bse1I ACTGG 2 cut(s) 411, 416
Bse21I CCTNAGG 1 cut(s) 548
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 5 cut(s) 298, 443, 502, 579, 589
BseLI CCNNNNNNNGG 2 cut(s) 882, 1017
BseMII CTCAG 2 cut(s) 141, 445
BseNI ACTGG 2 cut(s) 411, 416
BseRI GAGGAG 2 cut(s) 67, 212
BseXI GCAGC 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 3 cut(s) 302, 375, 472
BshNI GGYRCC 1 cut(s) 695
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 732
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 2 cut(s) 882, 1017
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 976
BsnI GGCC 3 cut(s) 302, 375, 472
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 4 cut(s) 69, 166, 940, 1056
BspACI CCGC 1 cut(s) 128
BspANI GGCC 3 cut(s) 302, 375, 472
BspCNI CTCAG 2 cut(s) 142, 444
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 697, 765
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 695
BspTI CTTAAG 1 cut(s) 1025
BspTNI GGTCTC 1 cut(s) 558
BsrI ACTGG 2 cut(s) 411, 416
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 69, 166, 940, 1056
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 594
BstAFI CTTAAG 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 223, 347
BstDEI CTNAG 4 cut(s) 150, 431, 548, 674
BstF5I GGATG 5 cut(s) 298, 443, 502, 579, 589
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 4 cut(s) 72, 169, 943, 1059
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 4 cut(s) 69, 166, 940, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 386, 506
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 3 cut(s) 138, 349, 648
BstSCI CCNGG 1 cut(s) 216
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 548
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 3 cut(s) 302, 375, 472
BtsCI GGATG 5 cut(s) 298, 443, 502, 579, 589
BtsIMutI CAGTG 3 cut(s) 404, 422, 439
Cac8I GCNNGC 2 cut(s) 223, 347
CaiI CAGNNNCTG 1 cut(s) 406
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 613
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 838, 973
CviAII CATG 5 cut(s) 135, 257, 346, 645, 712
CviQI GTAC 2 cut(s) 838, 973
DdeI CTNAG 4 cut(s) 150, 431, 548, 674
DpnI GATC 4 cut(s) 71, 168, 942, 1058
DpnII GATC 4 cut(s) 69, 166, 940, 1056
EaeI YGGCCR 3 cut(s) 300, 373, 470
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 558
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 544
Eco81I CCTNAGG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 1006
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 138, 260, 349, 648, 715
FaqI GGGAC 1 cut(s) 976
FatI CATG 5 cut(s) 134, 256, 345, 644, 711
FauNDI CATATG 1 cut(s) 651
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 5 cut(s) 305, 430, 509, 586, 596
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 4 cut(s) 212, 668, 917, 1001
GlaI GCGC 1 cut(s) 626
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 302, 375, 472
HapII CCGG 1 cut(s) 732
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 627
Hin1II CATG 5 cut(s) 138, 260, 349, 648, 715
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HinfI GANTC 4 cut(s) 154, 237, 489, 964
HpaII CCGG 1 cut(s) 732
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 631, 680
Hpy188I TCNGA 6 cut(s) 151, 355, 418, 688, 969, 1061
Hpy188III TCNNGA 4 cut(s) 41, 183, 605, 917
Hpy8I GTNNAC 2 cut(s) 631, 680
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 7 cut(s) 72, 101, 283, 574, 746, 973, 1009
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 8 cut(s) 29, 225, 280, 386, 564, 715, 739, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 506
HpyF3I CTNAG 4 cut(s) 150, 431, 548, 674
Hsp92II CATG 5 cut(s) 138, 260, 349, 648, 715
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 4 cut(s) 69, 166, 940, 1056
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 2 cut(s) 199, 549
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 4 cut(s) 283, 487, 574, 905
MaeI CTAG 4 cut(s) 212, 668, 917, 1001
MaeIII GTNAC 3 cut(s) 56, 727, 862
MalI GATC 4 cut(s) 71, 168, 942, 1058
MboI GATC 4 cut(s) 69, 166, 940, 1056
MboII GAAGA 6 cut(s) 113, 116, 138, 338, 581, 731
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 6 cut(s) 45, 79, 90, 339, 777, 1006
MluNI TGGCCA 1 cut(s) 472
MlyI GAGTC 1 cut(s) 958
MmeI TCCRAC 3 cut(s) 333, 514, 784
Mox20I TGGCCA 1 cut(s) 472
Mph1103I ATGCAT 1 cut(s) 898
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 1 cut(s) 472
MseI TTAA 4 cut(s) 204, 594, 1026, 1066
MslI CAYNNNNRTG 2 cut(s) 710, 918
Msp20I TGGCCA 1 cut(s) 472
MspCI CTTAAG 1 cut(s) 1025
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 2 cut(s) 386, 506
NdeI CATATG 1 cut(s) 651
NdeII GATC 4 cut(s) 69, 166, 940, 1056
NlaIII CATG 5 cut(s) 138, 260, 349, 648, 715
NlaIV GGNNCC 2 cut(s) 697, 765
NmuCI GTSAC 2 cut(s) 56, 862
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 3 cut(s) 138, 349, 648
PaeI GCATGC 1 cut(s) 349
PciI ACATGT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 3 cut(s) 154, 237, 489
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PscI ACATGT 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 697, 765
PspPI GGNCC 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 2 cut(s) 839, 974
RsaNI GTAC 2 cut(s) 838, 973
RseI CAYNNNNRTG 2 cut(s) 710, 918
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 204, 594, 1026, 1066
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 4 cut(s) 69, 166, 940, 1056
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 4 cut(s) 283, 487, 574, 905
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 2 cut(s) 710, 918
SmlI CTYRAG 3 cut(s) 181, 461, 1025
SmoI CTYRAG 3 cut(s) 181, 461, 1025
SphI GCATGC 1 cut(s) 349
Sse9I AATT 6 cut(s) 45, 79, 90, 339, 777, 1006
SsiI CCGC 1 cut(s) 128
SspMI CTAG 4 cut(s) 212, 668, 917, 1001
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 426
TasI AATT 6 cut(s) 45, 79, 90, 339, 777, 1006
TatI WGTACW 1 cut(s) 837
TfiI GAWTC 3 cut(s) 154, 237, 489
Tru1I TTAA 4 cut(s) 204, 594, 1026, 1066
Tru9I TTAA 4 cut(s) 204, 594, 1026, 1066
TscAI CASTG 3 cut(s) 411, 429, 439
TseFI GTSAC 2 cut(s) 56, 862
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 56, 862
TspDTI ATGAA 2 cut(s) 114, 302
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 3 cut(s) 411, 429, 439
Vha464I CTTAAG 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 3 cut(s) 79, 339, 1006
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 3 cut(s) 138, 349, 648
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 4 cut(s) 212, 668, 917, 1001
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.