Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002776

Physical Location & Seq

Genomic Coordinates Reverse (-)

45668709 .. 45670613

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGTGCAGCGATGACAAGCGTGGACAGAGCAAAAGTAGAGTCGGCGAAATCGTTCAAGAGATGGGGCAGGAGGCACCCGTTCATCCGGTACGGACTTCCGATGATCTCCCTCACCGTGTTCGGCGCCGTCGGCCTCGCCCATCTCATCCAAGGCAGCAAAGACATCGTCAAGTTCAAAGACGACCAGGAATGGGAGATCATCGAGACCCGCAAAGCCCTTTCCAGAACCGGACCACTAAACGCCTACAACCCCAAGAAAATTTCACTCGACCAAGAGCTCAAGGCTTTGCAGGAGAAGGTGGACATTAACAACTACGATTACAAGAGGATTCCGCGCCCAAATGAAGATAAGTCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006725 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009698 GO:0009699 GO:0009987 GO:0010143 GO:0010345 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019438 GO:0019748 GO:0042578 GO:0043170 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:0090447 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

9.73

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX16	PF14138	29 - 116	1.9e-20	Cytochrome c oxidase assembly protein COX16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29140 AT2G29140 AT2G29190 AT2G29190 AT2G29200 AT2G29200
fragaria_vesca	FvH4_3g36870 FvH4_7g22880 FvH4_7g22880
malus_domestica	MD01G1136900.v1.1 MD03G1087000.v1.1 MD07G1201900.v1.1 MD11G1096100.v1.1
prunus_persica	Prupe.2G238500_v2.0.a1 Prupe.2G238500_v2.0.a1 Prupe.6G071600_v2.0.a1
pyrus_communis	pycom01g15770 pycom07g18890 pycom11g08140
rosa_chinensis	RchiOBHm_Chr1g0368031 RchiOBHm_Chr5g0066091
rosa_laevigata	RLG00000027244 RLG00000035840
rosa_multiflora	Rmu_sc0002406.1_g000007 Rmu_sc0011946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014920 Rroxscaffold_4G00288920
rosa_rugosa	Rorug01G0338500 Rorug05G0376200
rosa_samantha	Rh1AG345400 Rh1BG307700 Rh1CG323300 Rh1DG339800 Rh5AG434700 Rh5BG451000 Rh5CG473300 Rh5DG464600
rosa_wichuraiana	Rw1G030740 Rw5G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	75, 125
AccII	CGCG	1 cut(s)	337
AciI	CCGC	2 cut(s)	211, 335
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	58, 178
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	8, 156
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 153, 185
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	128, 339
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	2 cut(s)	75, 125
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	20, 168
BccI	CCATC	2 cut(s)	57, 150
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	9, 157
BlsI	GCNGC	2 cut(s)	10, 158
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	77, 127
BmrFI	CCNGG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	87, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	84, 147
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	20, 168
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	2 cut(s)	75, 125
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	88, 231
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	105, 198
BspACI	CCGC	2 cut(s)	211, 335
BspANI	GGCC	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	77, 127
BspT107I	GGYRCC	2 cut(s)	75, 125
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	105, 198
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	84, 147
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 339
BstKTI	GATC	2 cut(s)	108, 201
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	105, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	20, 168
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	84, 147
CfoI	GCGC	2 cut(s)	128, 339
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	4 cut(s)	135, 218, 280, 287
CviKI_1	RGCY	4 cut(s)	135, 218, 280, 287
CviQI	GTAC	1 cut(s)	91
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	2 cut(s)	107, 200
DpnII	GATC	2 cut(s)	105, 198
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	9, 157
FokI	GGATG	2 cut(s)	71, 134
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	9, 157
FspBI	CTAG	1 cut(s)	361
GlaI	GCGC	2 cut(s)	127, 338
GluI	GCNGC	2 cut(s)	9, 157
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	88, 231
HhaI	GCGC	2 cut(s)	128, 339
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	2 cut(s)	126, 337
HinP1I	GCGC	2 cut(s)	126, 337
HinfI	GANTC	2 cut(s)	41, 331
HpaII	CCGG	2 cut(s)	88, 231
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	25, 304
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	58, 205, 225
Hpy8I	GTNNAC	2 cut(s)	25, 304
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	8, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	2 cut(s)	126, 337
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	105, 198
LpnPI	CCDG	7 cut(s)	55, 101, 173, 200, 238, 244, 278
Lsp1109I	GCAGC	2 cut(s)	20, 168
MaeI	CTAG	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	2 cut(s)	107, 200
MboI	GATC	2 cut(s)	105, 198
MboII	GAAGA	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	261
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	66, 122, 146, 321
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	88, 231
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	2 cut(s)	105, 198
NlaIV	GGNNCC	2 cut(s)	77, 127
NmuCI	GTSAC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	10, 158
PleI	GAGTC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	77, 127
PspPI	GGNCC	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	9, 157
Sau3AI	GATC	2 cut(s)	105, 198
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	2 cut(s)	282, 303
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	211, 335
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	204, 270
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	8, 156
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	73, 360
TspGWI	ACGGA	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.