AT2G29190

Pumilio homolog 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002776
Physical Location & Seq
Reverse (-)
12543812 .. 12548563
4752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29190.1

Sequence Viewer

Length: 2919 bp
ATGATACCGGAACTGGGGAGAAGACCGATGCATAGAGGGAACGAAGATTCATCTTTTGGGGATGATTATGAGAAAGAGATTGGAGTATTACTTGGTGAGCAGCAGAGAAGGCAAGTAGAAGCTGATGAGCTTGAGAGAGAGCTTAATTTGTATAGGAGTGGCTCTGCTCCACCGACTGTTGATGGTTCTGTTAGTGCTGCTGGAGGGCTTTTTAGCGGCGGAGGTGGGGCTCCTTTTTTGGAGTTTGGTGGAGGCAACAAGGGTAATGGGTTTGGTGGCGATGATGAGGAGTTTAGGAAAGATCCGGCTTACTTGTCTTATTACTATGCTAATATGAAGTTGAATCCGAGGTTGCCACCGCCTTTGATGTCTAGGGAGGATTTGAGGGTTGCTCAGAGGCTTAAAGGGAGTAGTAATGTTTTAGGTGGTGTTGGGGATAGGAGGAAAGTTAATGATAGTCAATCTTTATTCTCTATGCCACCTGGTTTTGATCAGAGGAAGCAGCATGAGTTTGAGGTTGAGAAAACTAGTGCTTCTTCTTCTGAATGGGATGCTAATGGATTGATCGGTTTGCCGGGTTTGGGGATTGGAGGCAAGCAGAAGAGTTTTGCTGATATCTTTCAGGCTGATATGGGGCATGGACATCCTGTCACTAAGCAGCCCTCACGTCCTGCAAGTCGTAATACCTTTGATGAAAATGTTGACTCTAAGAATAATCTGTCTCCATCTGCATCGCAAGGCATTGGTGCACCATCTCCATACAGCTATGCAGCTGTTCTGGGTTCGTCTTTGTCTAGAAATGGAACTCCAGATCCACAGGCCATTGCTAGGGTGCCTAGTCCCTGTCTTACTCCCATTGGGAGTGGGAGAGTGAGTTCAAATGATAAGAGGAACACAAGTAATCAAAGCCCGTTCAACGGTGGGCTCAACGAGTCTTCTGATCTTGTCAATGCTTTATCTGGCATGAACCTGTCTGGCAGTGGCGGGTTAGATGAACGTGGTCAGGCTGAGCAAGATGTGGAAAAGGTCAGGAACTATATGTTTGGACTGCAAGGTGGGCATAACGAAGTCAATCAACATGGGTTCCCAAACAAATCTGATCAAGCCCAGAAGGCAACTGGCTTGTTGAGGAATTCACAATTGAGAGGGGCACAAGGATCTACCTATAATGATGGAGGTGGAGTAGCTACTCAGTACCAGCATCTTGATAGCCCAAACTATTGTCTCAACAATTATGGATTAAATCCAGCTGTAGCTTCTATGATGGCTAACCAACTTGGAACTAATAACTATTCTCCAGTGTATGAAAATGCTTCTGCAGCATCTGCTATGGGATTTTCTGGAATGGATTCCAGACTTCATGGTGGAGGTTATGTATCATCTGGTCAAAACCTCTCTGAATCACGTAATCTTGGCAGATTCAGTAATCGAATGATGGGAGGAGGTACTGGTCTTCAGTCACATATGGCAGATCCAATGTATCATCAGTATGCTGATTCGCTTGATCTTCTCAATGATCCTTCCATGGACGTGAACTTTATGGGTAATTCATACATGAATATGCTTGAACTCCAGAGGGCTTATCTTGGAGCACAGAAATCACAGTACGGTGTCCCTTACAAATCCGGGAGCCCTAACAGCCACACCGATTATGGGAGTCCAACATTTGGGTCATATCCTGGCAGCCCATTGGCTCATCATCTTCTGCCTAATTCTCTTGTGTCACCCTGTAGCCCTATGAGACGAGGTGAAGTTAATATGCGATATCCCTCTGCAACAAGAAACTACGCAGGAGGGGTAATGGGTTCCTGGCACATGGATGCTAGTTTGGATGAAGGCTTTGGATCTTCAATGCTTGAAGAGTTCAAAAGTAACAAAACAAGAGGATTCGAACTTGCTGAAATAGCTGGCCATGTTGTAGAGTTCAGTTCGGATCAGTATGGAAGCCGGTTTATTCAGCAGAAACTCGAGACAGCAACAAGTGATGAGAAAAACATGGTTTATGAGGAGATCATGCCACACGCTCTTGCCCTGATGACTGACGTTTTTGGAAACTATGTGATTCAGAAGTTCTTTGAGCATGGACTCCCACCACAGAGAAGAGAATTGGCAGATAAACTCTTTGACAATGTTTTGCCTCTTAGCCTACAGATGTATGGTTGTCGTGTTATTCAGAAGGCAATTGAGGTGGTTGATCTAGACCAGAAAATTAAAATGGTGAAAGAACTCGATGGACATGTGATGCGATGCGTACGTGATCAGAATGGGAACCATGTGGTTCAAAAGTGTATTGAATGTGTGCCTGAAGAAAACATCGAATTTATTATTTCCACCTTCTTTGGCAATGTTGTGACCCTCTCCACTCACCCATATGGGTGCCGAGTTATTCAGAGGGTATTGGAGCACTGCCATGACCCTGATACTCAGAGTAAGGTTATGGATGAAATCATGTCAACTATTAGTATGCTGGCCCAAGATCAGTATGGAAACTATGTTATTCAGCATGTATTGGAACACGGAAAGCCTGATGAGCGTACTGTGATTATCAAGGAATTAGCGGGGAAGATTGTTCAGATGAGCCAACAGAAGTTTGCTTCAAACGTTGTTGAGAAATGTTTGACTTTTGGAGGGCCAGAGGAACGGGAATTTCTGGTAAATGAGATGCTGGGCACAACTGATGAAAACGAGCCTCTTCAGGCGATGATGAAGGATCAGTTTGCCAACTATGTAGTGCAAAAAGTTTTAGAGACATGTGATGACCAACAGCGTGAGCTGATCCTTGGTCGTATTAAAGTGCATCTCAATGCTTTAAAGAAATACACTTATGGAAAGCATATCGTTGCTCGTGTTGAAAAACTCGTTGCTGCTGGAGAGAGGAGGATGGCTTTGCAGTCCCTAACCCAGCCTCAGATGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NABP PUF

Protein Analysis

972

Amino Acids

106.65

Weight (kDa)

5.72

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NABP PF07990 277 - 370 1.5e-26 Nucleic acid binding protein NABP
NABP PF07990 369 - 633 7.2e-96 Nucleic acid binding protein NABP
PUF PF00806 638 - 672 3.5e-11 Pumilio-family RNA binding repeat
PUF PF00806 674 - 707 2.4e-08 Pumilio-family RNA binding repeat
PUF PF00806 710 - 743 1.3e-08 Pumilio-family RNA binding repeat
PUF_NOP9 PF22493 741 - 825 1.1e-07 NOP9-like PUF repeat domain
PUF PF00806 752 - 776 3.4e-06 Pumilio-family RNA binding repeat
PUF PF00806 782 - 817 7.3e-13 Pumilio-family RNA binding repeat
PUF PF00806 822 - 852 2.3e-10 Pumilio-family RNA binding repeat
PUF PF00806 856 - 889 3.2e-08 Pumilio-family RNA binding repeat
PUF PF00806 901 - 928 4e-08 Pumilio-family RNA binding repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 832, 2376
AccB7I CCANNNNNTGG 1 cut(s) 1667
AciI CCGC 5 cut(s) 216, 219, 359, 984, 2558
AclI AACGTT 1 cut(s) 2601
AclWI GGATC 9 cut(s) 296, 806, 1165, 1466, 1511, 1852, 1941, 2718, 2770
AcoI YGGCCR 1 cut(s) 1909
AcsI RAATTY 3 cut(s) 1132, 2318, 2645
AcuI CTGAAG 3 cut(s) 1439, 2325, 2678
AfaI GTAC 5 cut(s) 1196, 1447, 1607, 2253, 2536
AfiI CCNNNNNNNGG 6 cut(s) 14, 581, 828, 917, 1653, 1667
AflIII ACRYGT 2 cut(s) 2236, 2750
AhdI GACNNNNNGTC 1 cut(s) 647
AhlI ACTAGT 1 cut(s) 527
AjiI CACGTC 2 cut(s) 668, 1531
AjnI CCWGG 3 cut(s) 481, 1678, 1808
AloI GAACNNNNNNTCC 4 cut(s) 796, 828, 859, 891
Alw21I GWGCWC 3 cut(s) 751, 1594, 2406
Alw26I GTCTC 5 cut(s) 726, 1229, 1735, 1964, 2741
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 9 cut(s) 296, 806, 1165, 1466, 1511, 1852, 1941, 2718, 2770
AlwNI CAGNNNCTG 1 cut(s) 1325
Ama87I CYCGRG 1 cut(s) 1967
AoxI GGCC 4 cut(s) 819, 1909, 2469, 2630
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 8 cut(s) 100, 197, 502, 658, 770, 1319, 1683, 2864
ApoI RAATTY 3 cut(s) 1132, 2318, 2645
Asp700I GAANNNNTTC 1 cut(s) 1348
AspS9I GGNCC 2 cut(s) 2470, 2630
AsuC2I CCSGG 2 cut(s) 576, 1627
AsuHPI GGTGA 5 cut(s) 107, 1716, 1760, 2230, 2357
AsuII TTCGAA 1 cut(s) 1890
AvaI CYCGRG 1 cut(s) 1967
BaeGI GKGCMC 3 cut(s) 751, 1153, 2672
BalI TGGCCA 1 cut(s) 1911
BanI GGYRCC 2 cut(s) 832, 2376
BanII GRGCYC 3 cut(s) 232, 927, 1634
BauI CACGAG 1 cut(s) 2844
BbsI GAAGAC 3 cut(s) 28, 927, 1445
Bbv12I GWGCWC 3 cut(s) 751, 1594, 2406
BbvI GCAGC 8 cut(s) 112, 184, 514, 670, 782, 1331, 1695, 2851
BccI CCATC 9 cut(s) 176, 733, 760, 1166, 1258, 1429, 2225, 2875, 2905
BciT130I CCWGG 3 cut(s) 483, 1680, 1810
BclI TGATCA 3 cut(s) 490, 1099, 2257
BcnI CCSGG 2 cut(s) 576, 1627
BcoDI GTCTC 5 cut(s) 726, 1229, 1735, 1964, 2741
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 7 cut(s) 372, 528, 795, 828, 837, 1824, 2198
BfmI CTRYAG 4 cut(s) 1251, 1317, 1729, 2147
BglI GCCNNNNNGGC 1 cut(s) 1112
BisI GCNGC 9 cut(s) 101, 198, 217, 503, 659, 771, 1320, 1684, 2865
BlpI GCTNAGC 1 cut(s) 1008
BlsI GCNGC 9 cut(s) 102, 199, 218, 504, 660, 772, 1321, 1685, 2866
Bme1390I CCNGG 5 cut(s) 483, 576, 1627, 1680, 1810
BmeRI GACNNNNNGTC 1 cut(s) 647
BmeT110I CYCGRG 1 cut(s) 1967
BmgBI CACGTC 2 cut(s) 668, 1531
BmgT120I GGNCC 2 cut(s) 2470, 2630
BmiI GGNNCC 7 cut(s) 231, 834, 1085, 1631, 1807, 2270, 2378
BmrFI CCNGG 5 cut(s) 483, 576, 1627, 1680, 1810
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 3 cut(s) 28, 927, 1445
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 5 cut(s) 222, 792, 1281, 1556, 2889
Bpu1102I GCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 1890
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 576, 1627
BsaAI YACGTR 2 cut(s) 1406, 2255
BsaJI CCNNGG 3 cut(s) 347, 1524, 2779
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 6 cut(s) 859, 889, 1167, 1197, 1359, 1389
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 581, 828, 917, 1653, 1667
Bse118I RCCGGY 1 cut(s) 1947
Bse1I ACTGG 4 cut(s) 18, 1123, 1298, 1453
Bse3DI GCAATG 2 cut(s) 822, 2350
BseBI CCWGG 3 cut(s) 483, 1680, 1810
BseDI CCNNGG 3 cut(s) 347, 1524, 2779
BseGI GGATG 7 cut(s) 67, 556, 643, 1825, 1837, 2446, 2886
BseLI CCNNNNNNNGG 6 cut(s) 14, 581, 828, 917, 1653, 1667
BseMI GCAATG 2 cut(s) 822, 2350
BseMII CTCAG 4 cut(s) 407, 999, 1205, 2438
BseNI ACTGG 4 cut(s) 18, 1123, 1298, 1453
BseRI GAGGAG 4 cut(s) 302, 1455, 2021, 2890
BseSI GKGCMC 3 cut(s) 751, 1153, 2672
BseXI GCAGC 8 cut(s) 112, 184, 514, 670, 782, 1331, 1695, 2851
BseYI CCCAGC 2 cut(s) 2665, 2901
BshFI GGCC 4 cut(s) 821, 1911, 2471, 2632
BshNI GGYRCC 2 cut(s) 832, 2376
BsiHKAI GWGCWC 3 cut(s) 751, 1594, 2406
BsiHKCI CYCGRG 1 cut(s) 1967
BsiSI CCGG 5 cut(s) 8, 305, 575, 1626, 1948
BsiWI CGTACG 1 cut(s) 2251
BslFI GGGAC 3 cut(s) 825, 1598, 2878
BslI CCNNNNNNNGG 6 cut(s) 14, 581, 828, 917, 1653, 1667
BsmAI GTCTC 5 cut(s) 726, 1229, 1735, 1964, 2741
BsmBI CGTCTC 1 cut(s) 1735
BsmFI GGGAC 3 cut(s) 825, 1598, 2878
BsnI GGCC 4 cut(s) 821, 1911, 2471, 2632
BsoBI CYCGRG 1 cut(s) 1967
Bsp119I TTCGAA 1 cut(s) 1890
Bsp1286I GDGCHC 8 cut(s) 232, 751, 927, 1153, 1594, 1634, 2406, 2672
Bsp1720I GCTNAGC 1 cut(s) 1008
Bsp19I CCATGG 1 cut(s) 1524
BspACI CCGC 5 cut(s) 216, 219, 359, 984, 2558
BspANI GGCC 4 cut(s) 821, 1911, 2471, 2632
BspCNI CTCAG 4 cut(s) 406, 1000, 1204, 2437
BspLI GGNNCC 7 cut(s) 231, 834, 1085, 1631, 1807, 2270, 2378
BspMAI CTGCAG 1 cut(s) 1321
BspPI GGATC 9 cut(s) 296, 806, 1165, 1466, 1511, 1852, 1941, 2718, 2770
BspT104I TTCGAA 1 cut(s) 1890
BspT107I GGYRCC 2 cut(s) 832, 2376
BsrDI GCAATG 2 cut(s) 822, 2350
BsrFI RCCGGY 1 cut(s) 1947
BsrI ACTGG 4 cut(s) 18, 1123, 1298, 1453
BssAI RCCGGY 1 cut(s) 1947
BssECI CCNNGG 3 cut(s) 347, 1524, 2779
BssSI CACGAG 1 cut(s) 2844
BssT1I CCWWGG 2 cut(s) 1524, 2779
Bst2BI CACGAG 1 cut(s) 2844
Bst2UI CCWGG 3 cut(s) 483, 1680, 1810
Bst4CI ACNGT 5 cut(s) 178, 920, 1605, 1610, 2539
Bst6I CTCTTC 4 cut(s) 596, 1854, 2095, 2697
BstAPI GCANNNNNTGC 1 cut(s) 1325
BstBAI YACGTR 2 cut(s) 1406, 2255
BstBI TTCGAA 1 cut(s) 1890
BstC8I GCNNGC 3 cut(s) 596, 1909, 2469
BstDEI CTNAG 8 cut(s) 393, 654, 708, 1008, 1191, 2141, 2424, 2907
BstDSI CCRYGG 1 cut(s) 1524
BstF5I GGATG 7 cut(s) 67, 556, 643, 1825, 1837, 2446, 2886
BstMAI GTCTC 5 cut(s) 726, 1229, 1735, 1964, 2741
BstMWI GCNNNNNNNGC 8 cut(s) 109, 1057, 1112, 1319, 1325, 1638, 1904, 2530
BstNI CCWGG 3 cut(s) 483, 1680, 1810
BstNSI RCATGY 3 cut(s) 2240, 2507, 2754
BstSCI CCNGG 5 cut(s) 481, 574, 1625, 1678, 1808
BstSFI CTRYAG 4 cut(s) 1251, 1317, 1729, 2147
BstSLI GKGCMC 3 cut(s) 751, 1153, 2672
BstV1I GCAGC 8 cut(s) 112, 184, 514, 670, 782, 1331, 1695, 2851
BstV2I GAAGAC 3 cut(s) 28, 927, 1445
BstX2I RGATCY 5 cut(s) 301, 811, 1157, 1471, 1844
BstYI RGATCY 5 cut(s) 301, 811, 1157, 1471, 1844
BsuRI GGCC 4 cut(s) 821, 1911, 2471, 2632
BtgI CCRYGG 1 cut(s) 1524
BtgZI GCGATG 4 cut(s) 294, 717, 2260, 2714
BtrI CACGTC 2 cut(s) 668, 1531
BtsCI GGATG 7 cut(s) 67, 556, 643, 1825, 1837, 2446, 2886
BtsI GCAGTG 2 cut(s) 985, 2404
BtsIMutI CAGTG 3 cut(s) 985, 1305, 2404
Cac8I GCNNGC 3 cut(s) 596, 1909, 2469
CaiI CAGNNNCTG 1 cut(s) 1325
Cfr10I RCCGGY 1 cut(s) 1947
Cfr13I GGNCC 2 cut(s) 2470, 2630
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 5 cut(s) 1195, 1446, 1606, 2252, 2535
CspCI CAANNNNNGTGG 6 cut(s) 345, 380, 2169, 2204, 2320, 2355
CviQI GTAC 5 cut(s) 1195, 1446, 1606, 2252, 2535
DdeI CTNAG 8 cut(s) 393, 654, 708, 1008, 1191, 2141, 2424, 2907
DraI TTTAAA 1 cut(s) 2811
DriI GACNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 1909
Eam1104I CTCTTC 4 cut(s) 596, 1854, 2095, 2697
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 4 cut(s) 596, 1854, 2095, 2697
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 1524, 2779
Eco24I GRGCYC 3 cut(s) 232, 927, 1634
Eco32I GATATC 2 cut(s) 616, 1766
Eco57I CTGAAG 3 cut(s) 1439, 2325, 2678
Eco88I CYCGRG 1 cut(s) 1967
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 3 cut(s) 481, 1678, 1808
EcoRV GATATC 2 cut(s) 616, 1766
EcoT14I CCWWGG 2 cut(s) 1524, 2779
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 3 cut(s) 232, 927, 1634
ErhI CCWWGG 2 cut(s) 1524, 2779
Esp3I CGTCTC 1 cut(s) 1735
FaqI GGGAC 3 cut(s) 825, 1598, 2878
FauI CCCGC 2 cut(s) 977, 2551
FauNDI CATATG 2 cut(s) 1464, 2371
FbaI TGATCA 3 cut(s) 490, 1099, 2257
Fnu4HI GCNGC 9 cut(s) 101, 198, 217, 503, 659, 771, 1320, 1684, 2865
FokI GGATG 7 cut(s) 74, 563, 630, 1832, 1844, 2453, 2893
FriOI GRGCYC 3 cut(s) 232, 927, 1634
Fsp4HI GCNGC 9 cut(s) 101, 198, 217, 503, 659, 771, 1320, 1684, 2865
FspBI CTAG 7 cut(s) 372, 528, 795, 828, 837, 1824, 2198
GluI GCNGC 9 cut(s) 101, 198, 217, 503, 659, 771, 1320, 1684, 2865
GsaI CCCAGC 2 cut(s) 2669, 2905
GsuI CTGGAG 5 cut(s) 222, 792, 1281, 1556, 2889
HaeIII GGCC 4 cut(s) 821, 1911, 2471, 2632
HapII CCGG 5 cut(s) 8, 305, 575, 1626, 1948
HincII GTYRAC 2 cut(s) 703, 2454
HindII GTYRAC 2 cut(s) 703, 2454
HpaII CCGG 5 cut(s) 8, 305, 575, 1626, 1948
HphI GGTGA 5 cut(s) 107, 1716, 1760, 2230, 2357
Hpy166II GTNNAC 4 cut(s) 703, 749, 1534, 2454
Hpy188III TCNNGA 9 cut(s) 795, 809, 1030, 1205, 1341, 1353, 1573, 1969, 2198
Hpy8I GTNNAC 4 cut(s) 703, 749, 1534, 2454
HpyAV CCTTC 7 cut(s) 102, 1105, 1530, 1829, 2170, 2344, 2701
HpyCH4III ACNGT 5 cut(s) 178, 920, 1605, 1610, 2539
HpyCH4IV ACGT 7 cut(s) 667, 997, 1405, 1530, 2043, 2254, 2601
HpyF10VI GCNNNNNNNGC 8 cut(s) 109, 1057, 1112, 1319, 1325, 1638, 1904, 2530
HpyF3I CTNAG 8 cut(s) 393, 654, 708, 1008, 1191, 2141, 2424, 2907
HpySE526I ACGT 7 cut(s) 667, 997, 1405, 1530, 2043, 2254, 2601
Ksp22I TGATCA 3 cut(s) 490, 1099, 2257
LmnI GCTCC 5 cut(s) 172, 235, 1589, 1629, 2401
Lsp1109I GCAGC 8 cut(s) 112, 184, 514, 670, 782, 1331, 1695, 2851
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 7 cut(s) 372, 528, 795, 828, 837, 1824, 2198
MaeII ACGT 7 cut(s) 667, 997, 1405, 1530, 2043, 2254, 2601
MaeIII GTNAC 5 cut(s) 649, 1458, 1722, 1871, 2350
MfeI CAATTG 2 cut(s) 1139, 2181
MflI RGATCY 5 cut(s) 301, 811, 1157, 1471, 1844
MhlI GDGCHC 8 cut(s) 232, 751, 927, 1153, 1594, 1634, 2406, 2672
MlsI TGGCCA 1 cut(s) 1911
MluNI TGGCCA 1 cut(s) 1911
MlyI GAGTC 4 cut(s) 698, 941, 1666, 2079
MmeI TCCRAC 1 cut(s) 1685
Mox20I TGGCCA 1 cut(s) 1911
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 1348
MscI TGGCCA 1 cut(s) 1911
MseI TTAA 8 cut(s) 144, 402, 450, 1241, 1755, 2211, 2790, 2810
MslI CAYNNNNRTG 8 cut(s) 1488, 1529, 1559, 1818, 2370, 2374, 2409, 2802
Msp20I TGGCCA 1 cut(s) 1911
MspA1I CMGCKG 2 cut(s) 773, 1250
MspI CCGG 5 cut(s) 8, 305, 575, 1626, 1948
MspR9I CCNGG 5 cut(s) 483, 576, 1627, 1680, 1810
MunI CAATTG 2 cut(s) 1139, 2181
MvaI CCWGG 3 cut(s) 483, 1680, 1810
MwoI GCNNNNNNNGC 8 cut(s) 109, 1057, 1112, 1319, 1325, 1638, 1904, 2530
NciI CCSGG 2 cut(s) 576, 1627
NcoI CCATGG 1 cut(s) 1524
NdeI CATATG 2 cut(s) 1464, 2371
NlaIV GGNNCC 7 cut(s) 231, 834, 1085, 1631, 1807, 2270, 2378
NmeAIII GCCGAG 1 cut(s) 2405
NmuCI GTSAC 4 cut(s) 649, 1458, 1722, 2350
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 3 cut(s) 2240, 2507, 2754
NspV TTCGAA 1 cut(s) 1890
PaeR7I CTCGAG 1 cut(s) 1967
PciI ACATGT 2 cut(s) 2236, 2750
PdmI GAANNNNTTC 1 cut(s) 1348
PfeI GAWTC 8 cut(s) 47, 343, 1349, 1400, 1419, 1496, 1887, 2062
Pfl23II CGTACG 1 cut(s) 2251
PflMI CCANNNNNTGG 1 cut(s) 1667
PfoI TCCNGGA 1 cut(s) 1625
PkrI GCNGC 9 cut(s) 102, 199, 218, 504, 660, 772, 1321, 1685, 2866
PleI GAGTC 4 cut(s) 698, 940, 1665, 2079
PpsI GAGTC 4 cut(s) 698, 940, 1665, 2079
Ppu21I YACGTR 2 cut(s) 1406, 2255
PscI ACATGT 2 cut(s) 2236, 2750
Psp1406I AACGTT 1 cut(s) 2601
Psp6I CCWGG 3 cut(s) 481, 1678, 1808
PspFI CCCAGC 2 cut(s) 2665, 2901
PspGI CCWGG 3 cut(s) 481, 1678, 1808
PspLI CGTACG 1 cut(s) 2251
PspN4I GGNNCC 7 cut(s) 231, 834, 1085, 1631, 1807, 2270, 2378
PspPI GGNCC 2 cut(s) 2470, 2630
PstI CTGCAG 1 cut(s) 1321
PstNI CAGNNNCTG 1 cut(s) 1325
PsuI RGATCY 5 cut(s) 301, 811, 1157, 1471, 1844
PvuII CAGCTG 2 cut(s) 773, 1250
RsaI GTAC 5 cut(s) 1196, 1447, 1607, 2253, 2536
RsaNI GTAC 5 cut(s) 1195, 1446, 1606, 2252, 2535
RseI CAYNNNNRTG 8 cut(s) 1488, 1529, 1559, 1818, 2370, 2374, 2409, 2802
SaqAI TTAA 8 cut(s) 144, 402, 450, 1241, 1755, 2211, 2790, 2810
SatI GCNGC 9 cut(s) 101, 198, 217, 503, 659, 771, 1320, 1684, 2865
Sau96I GGNCC 2 cut(s) 2470, 2630
SchI GAGTC 4 cut(s) 698, 941, 1666, 2079
ScrFI CCNGG 5 cut(s) 483, 576, 1627, 1680, 1810
SduI GDGCHC 8 cut(s) 232, 751, 927, 1153, 1594, 1634, 2406, 2672
SexAI ACCWGGT 1 cut(s) 481
SfcI CTRYAG 4 cut(s) 1251, 1317, 1729, 2147
Sfr274I CTCGAG 1 cut(s) 1967
SfuI TTCGAA 1 cut(s) 1890
SlaI CTCGAG 1 cut(s) 1967
SmiMI CAYNNNNRTG 8 cut(s) 1488, 1529, 1559, 1818, 2370, 2374, 2409, 2802
SmlI CTYRAG 2 cut(s) 131, 1967
SmoI CTYRAG 2 cut(s) 131, 1967
SpeI ACTAGT 1 cut(s) 527
SsiI CCGC 5 cut(s) 216, 219, 359, 984, 2558
SspMI CTAG 7 cut(s) 372, 528, 795, 828, 837, 1824, 2198
StyD4I CCNGG 5 cut(s) 481, 574, 1625, 1678, 1808
StyI CCWWGG 2 cut(s) 1524, 2779
TaaI ACNGT 5 cut(s) 178, 920, 1605, 1610, 2539
TaiI ACGT 7 cut(s) 670, 1000, 1408, 1533, 2046, 2257, 2604
TaqI TCGA 5 cut(s) 1429, 1890, 1968, 2229, 2316
TaqII GACCGA 1 cut(s) 40
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 8 cut(s) 47, 343, 1349, 1400, 1419, 1496, 1887, 2062
Tru1I TTAA 8 cut(s) 144, 402, 450, 1241, 1755, 2211, 2790, 2810
Tru9I TTAA 8 cut(s) 144, 402, 450, 1241, 1755, 2211, 2790, 2810
TscAI CASTG 3 cut(s) 985, 1305, 2411
TseFI GTSAC 4 cut(s) 649, 1458, 1722, 2350
TseI GCWGC 8 cut(s) 100, 197, 502, 658, 770, 1319, 1683, 2864
Tsp45I GTSAC 4 cut(s) 649, 1458, 1722, 2350
TspGWI ACGGA 1 cut(s) 2532
TspRI CASTG 3 cut(s) 985, 1305, 2411
Van91I CCANNNNNTGG 1 cut(s) 1667
VneI GTGCAC 1 cut(s) 747
XapI RAATTY 3 cut(s) 1132, 2318, 2645
XbaI TCTAGA 2 cut(s) 794, 2197
XceI RCATGY 3 cut(s) 2240, 2507, 2754
XcmI CCANNNNNNNNNTGG 3 cut(s) 1115, 1649, 2480
XhoI CTCGAG 1 cut(s) 1967
XmnI GAANNNNTTC 1 cut(s) 1348
XspI CTAG 7 cut(s) 372, 528, 795, 828, 837, 1824, 2198
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.