AT2G29140

Pumilio homolog 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002776
Physical Location & Seq
Forward (+)
12530838 .. 12535457
4620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29140.1

Sequence Viewer

Length: 2895 bp
ATGATGATACCGGAACTAGGGAGAAGACCGATGCATAGAGGTAACGAAGATTCATCTTTTGGGGATGATTACGAGAAAGAGATTGGAGTATTGCTTGGTGAGCAGCAGAGAAGGCAAGTAGAGGCGGATGAGCTTGAGAGAGAGCTTAACTTGTATAGAAGTGGCTCTGCTCCACCGACTGTTGATGGTTCTCTTAGTGCTGCCGGAGGGCTTTTTAGCGGCGGAGGTGGGGCTTCTTTTCTGGAATTTGGTGGAGTTAATAAGGGTAATGGGTTTGGTGGTGATGATGAGGAGTTTAGGAAAGATCCAGCTTACTTGTCTTATTACTATGCTAATATGAAGTTGAATCCGAGGTTGCCACCTCCTTTGATGTCTAGGGAGGATTTGAGGGTTGCTCAGAGGCTTAAAGGGAGTAATAATGTGTTAGGTGGTGTTGGGGATAGGAGAAAAGTGAATGACAGTCGGTCTTTGTTCTCTATGCCACCTGGTTTTGAGGCTGGAAAACCTGGTGCTTCTGCTTCTGAGTGGGATGCTAATGGATTGATTGGTTTGGGACTTGGAGGCAAGCAGAAGAGTTTTGCTGATATCTTTCAGGCGGATATGGGGCATCCTGTTGTACAGCAGCCCTCACGTCCTGCTAGTCGTAATACCTTTGATGAGAATGTTGACTCTAATAATAACCTGTCTCCATCTGCATCACAAGGCATTGGAGCGCCATCTCCATACTGCTATGCAGCTGTTCTGGGTTCATCTTTGTCTAGAAATGGAACTCCAGATCCACAGGGCATTGCTAGGGTGCCTAGTCCTTGCCTTACTCCCATTGGCAGTGGAAGAGTGAGTTCAAATGATAAGAGGAACACAAGTAATCAAAGCCCGTTCAACGGTGTTACATCTGGTCTCAACGAGTCTTCTGATCTTGTCAATGCTTTATCCGGCTTGAACCTGTCAGGCACTGGCGGGCTAGATGAACGTGGTCAGGCTGAGCAAGATGTCGAAAAGGTCAGGAACTATATGTTTGGACTGCAAGATGGGCATAATGAAGTCAATCCACATGGGTTCCCAAACAGATCTGATCAAGCTAGGGGAACTGCTTCGTGCAGGAATTCACAAATGAGAGGGTCACAAGGATCTGCATATAATAGTGGAAGTGGAGTAGCTAATCCTTACCAGCATCATGATAGCCCAAACTATTACGCATTAAATCCAGCTGTAGCTTCTATGATGGCTAACCAACTTGGAACTAATAACTATTCTCCAATGTATGAAAATGCTTCTGCCACTTTGGGATATTCTGCAATGGACTCCAGACTTCATGGTGGAAGTTTTGTTTCTTCTGGTCAAAACCTCTCTGAATCACGAAATATTGGCAGGGTCGGTAATCGAATGATGGAAGGAGGTACGGGTCACCCGTCACATCTTGCAGACCCGATGTATCATCAGTATGCAAGGTTCTCTGAAAATGCTGATTCGTTTGATCTTCTTAATGACCCTTCAATGGACAGGAACTATGGTAATTCATACATGAATATGCTTGAAATTCAGAGGGCTTATCTCGGATCTCAGAAATCACAGTATGGTCTTCCTTACAAATCAGGGAGCCCTAACAGCCATAGCTATTATGGCAGTCCAACATTTGGGTCTAATATGTCATATCCTGGCAGCCCATTGGCTCATCATGGTATGCCAAACTCTCTTATGTCACCTTACAGCCCTATGAGACGAGGTGAAGTAAATATGCGATATCCCGCTGCAACAAGAAACTATACTGGAGGGGTAATGGGTTCTTGGCACATGGATGCTAGTTTGGATGAAGGATTTGGATCTTCAATGCTTGAAGAGTTCAAAAGTAACAAAACAAGAGGGTTCGAACTTTCTGAAATAGCTGGCCATGTTGTAGAGTTCAGTTCGGATCAGTATGGAAGCCGGTTTATTCAGCAGAAACTCGAGACAGCAACAACTGATGAGAAAAACATGGTTTATGAGGAGATCATGCCAAAAGCTCTTGCCCTGATGACTGACGTTTTTGGAAACTATGTGATTCAGAAGTTCTTTGAGCATGGACTCCCACCACAGAGAAGAGAATTGGGAGAGAAACTCATTGACAATGTTTTGCCTCTTAGCTTACAGATGTATGGTTGTCGTGTCATCCAGAAGGCAATTGAGGTGGTTGATCTAGACCAGAAAATCCAAATGGTCAAAGAACTTGATGGACATGTGATGCGATGTGTACGTGATCAGAATGGGAACCATGTGGTTCAAAAGTGTATTGAATGTGTGCCTGAAGAAAACATTGAGTTTATTATTTCAACTTTCTTTGGCCATGTGGTGACCCTCTCCACTCACCCATACGGGTGCCGTGTTATTCAGAGAGTATTGGAACACTGCCATAACCCTGATACACAGAGTAAGGTTATGGAAGAAATCCTGTCCACTGTTAGTATGCTGACCCAAGATCAGTATGGAAACTATGTTGTTCAGCATGTACTGGAGCATGGAAAGCCTGATGAGCGCACTGTGATAATCAAAGAGTTAGCGGGGAAGATTGTTCAGATGAGCCAACAGAAGTTTGCATCAAACGTTGTTGAGAAGTGTTTGACTTTTGGAGGTCCTGAGGAACGGGAATTGCTGGTGAATGAGATGCTGGGCACAACTGATGAAAACGAGCCTCTTCAGGCGATGATGAAGGATCAGTTTGCAAACTATGTAGTGCAAAAAGTCCTGGAGACATGTGATGACCAACAGCGTGAACTGATACTGACTCGTATTAAAGTGCATCTGAATGCTCTAAAGAAATACACTTACGGAAAGCATATCGTTGCCCGTGTTGAAAAACTCGTTGCTGCTGGAGAGAGGAGAATGGCTTTGCAGTCATTACCCCAGCCTCTGGTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NABP PUF

Protein Analysis

964

Amino Acids

105.99

Weight (kDa)

5.8

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NABP PF07990 265 - 360 1.8e-28 Nucleic acid binding protein NABP
NABP PF07990 358 - 625 8.3e-86 Nucleic acid binding protein NABP
PUF PF00806 630 - 664 4e-11 Pumilio-family RNA binding repeat
PUF PF00806 668 - 697 2.6e-07 Pumilio-family RNA binding repeat
PUF PF00806 702 - 735 4.8e-09 Pumilio-family RNA binding repeat
PUF_NOP9 PF22493 735 - 819 5.6e-08 NOP9-like PUF repeat domain
PUF PF00806 744 - 768 3.4e-06 Pumilio-family RNA binding repeat
PUF PF00806 774 - 809 5.7e-13 Pumilio-family RNA binding repeat
PUF PF00806 815 - 844 4.1e-09 Pumilio-family RNA binding repeat
PUF PF00806 848 - 881 4e-08 Pumilio-family RNA binding repeat
PUF PF00806 893 - 922 2.8e-08 Pumilio-family RNA binding repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 796, 2352
AccB7I CCANNNNNTGG 2 cut(s) 1634, 2884
AciI CCGC 7 cut(s) 125, 219, 222, 596, 957, 1746, 2534
AclI AACGTT 1 cut(s) 2577
AclWI GGATC 7 cut(s) 299, 770, 1135, 1564, 1828, 1917, 2694
AcoI YGGCCR 2 cut(s) 1885, 2317
AcsI RAATTY 3 cut(s) 245, 1102, 1536
AcuI CTGAAG 2 cut(s) 2301, 2654
AfaI GTAC 4 cut(s) 618, 1399, 2229, 2484
AfiI CCNNNNNNNGG 5 cut(s) 17, 881, 1495, 1634, 2884
AflIII ACRYGT 2 cut(s) 2212, 2726
AhdI GACNNNNNGTC 1 cut(s) 463
AjiI CACGTC 1 cut(s) 632
AjnI CCWGG 4 cut(s) 484, 505, 1654, 2718
AloI GAACNNNNNNTCC 2 cut(s) 760, 792
Alw26I GTCTC 5 cut(s) 690, 902, 1711, 1940, 2717
AlwI GGATC 7 cut(s) 299, 770, 1135, 1564, 1828, 1917, 2694
AlwNI CAGNNNCTG 2 cut(s) 953, 2884
Ama87I CYCGRG 1 cut(s) 1943
AoxI GGCC 2 cut(s) 1885, 2317
ApeKI GCWGC 7 cut(s) 103, 200, 622, 734, 1659, 1748, 2840
ApoI RAATTY 3 cut(s) 245, 1102, 1536
Asp700I GAANNNNTTC 1 cut(s) 1090
AspLEI GCGC 2 cut(s) 715, 2511
AspS9I GGNCC 1 cut(s) 2606
AsuHPI GGTGA 8 cut(s) 110, 293, 1397, 1692, 1736, 2333, 2338, 2641
AsuII TTCGAA 1 cut(s) 1866
AvaI CYCGRG 1 cut(s) 1943
AvaII GGWCC 1 cut(s) 2606
AxyI CCTNAGG 1 cut(s) 2610
BaeGI GKGCMC 1 cut(s) 2648
BalI TGGCCA 2 cut(s) 1887, 2319
BanI GGYRCC 2 cut(s) 796, 2352
BanII GRGCYC 1 cut(s) 1601
BbsI GAAGAC 3 cut(s) 31, 900, 1571
BbvI GCAGC 7 cut(s) 115, 187, 634, 746, 1671, 1735, 2827
BccI CCATC 7 cut(s) 179, 697, 724, 1022, 1216, 1381, 2201
BceAI ACGGC 1 cut(s) 2340
BciT130I CCWGG 4 cut(s) 486, 507, 1656, 2720
BclI TGATCA 2 cut(s) 1072, 2233
BcoDI GTCTC 5 cut(s) 690, 902, 1711, 1940, 2717
BfmI CTRYAG 1 cut(s) 1209
BfoI RGCGCY 1 cut(s) 716
BglII AGATCT 1 cut(s) 1067
BisI GCNGC 8 cut(s) 104, 201, 220, 623, 735, 1660, 1749, 2841
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 8 cut(s) 105, 202, 221, 624, 736, 1661, 1750, 2842
Bme1390I CCNGG 4 cut(s) 486, 507, 1656, 2720
Bme18I GGWCC 1 cut(s) 2606
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 1943
BmgBI CACGTC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 2606
BmiI GGNNCC 5 cut(s) 798, 1058, 1598, 2246, 2354
BmrFI CCNGG 4 cut(s) 486, 507, 1656, 2720
BpiI GAAGAC 3 cut(s) 31, 900, 1571
BplI GAGNNNNNCTC 4 cut(s) 379, 411, 2079, 2111
BpmI CTGGAG 6 cut(s) 756, 1288, 1788, 2507, 2741, 2865
Bpu1102I GCTNAGC 1 cut(s) 981
Bpu14I TTCGAA 1 cut(s) 1866
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 2231
BsaBI GATNNNNATC 1 cut(s) 1819
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 881, 1495, 1634, 2884
Bse118I RCCGGY 1 cut(s) 1923
Bse1I ACTGG 3 cut(s) 958, 1771, 2490
Bse21I CCTNAGG 1 cut(s) 2610
Bse3DI GCAATG 2 cut(s) 786, 1302
Bse8I GATNNNNATC 1 cut(s) 1819
BseBI CCWGG 4 cut(s) 486, 507, 1656, 2720
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 7 cut(s) 70, 133, 535, 607, 1801, 1813, 2145
BseJI GATNNNNATC 1 cut(s) 1819
BseLI CCNNNNNNNGG 5 cut(s) 17, 881, 1495, 1634, 2884
BseMI GCAATG 2 cut(s) 786, 1302
BseMII CTCAG 5 cut(s) 410, 513, 972, 1574, 2601
BseNI ACTGG 3 cut(s) 958, 1771, 2490
BseRI GAGGAG 3 cut(s) 305, 1997, 2866
BseSI GKGCMC 1 cut(s) 2648
BseXI GCAGC 7 cut(s) 115, 187, 634, 746, 1671, 1735, 2827
BseYI CCCAGC 2 cut(s) 2641, 2877
BsgI GTGCAG 1 cut(s) 1117
BshFI GGCC 2 cut(s) 1887, 2319
BshNI GGYRCC 2 cut(s) 796, 2352
BsiHKCI CYCGRG 1 cut(s) 1943
BsiSI CCGG 4 cut(s) 11, 204, 933, 1924
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 5 cut(s) 17, 881, 1495, 1634, 2884
BsmAI GTCTC 5 cut(s) 690, 902, 1711, 1940, 2717
BsmBI CGTCTC 1 cut(s) 1711
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 2785
BsnI GGCC 2 cut(s) 1887, 2319
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 1 cut(s) 1943
Bsp119I TTCGAA 1 cut(s) 1866
Bsp1286I GDGCHC 2 cut(s) 1601, 2648
Bsp1407I TGTACA 1 cut(s) 616
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 7 cut(s) 125, 219, 222, 596, 957, 1746, 2534
BspANI GGCC 2 cut(s) 1887, 2319
BspCNI CTCAG 5 cut(s) 409, 514, 973, 1573, 2602
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 5 cut(s) 798, 1058, 1598, 2246, 2354
BspPI GGATC 7 cut(s) 299, 770, 1135, 1564, 1828, 1917, 2694
BspT104I TTCGAA 1 cut(s) 1866
BspT107I GGYRCC 2 cut(s) 796, 2352
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 2 cut(s) 786, 1302
BsrFI RCCGGY 1 cut(s) 1923
BsrGI TGTACA 1 cut(s) 616
BsrI ACTGG 3 cut(s) 958, 1771, 2490
BssAI RCCGGY 1 cut(s) 1923
BssECI CCNNGG 1 cut(s) 350
Bst2UI CCWGG 4 cut(s) 486, 507, 1656, 2720
Bst4CI ACNGT 6 cut(s) 181, 461, 884, 1572, 2434, 2515
Bst6I CTCTTC 5 cut(s) 566, 826, 1830, 2071, 2673
BstAUI TGTACA 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 2231
BstBI TTCGAA 1 cut(s) 1866
BstC8I GCNNGC 3 cut(s) 566, 959, 1885
BstDEI CTNAG 7 cut(s) 194, 396, 522, 981, 1560, 2117, 2610
BstEII GGTNACC 2 cut(s) 1403, 2326
BstF5I GGATG 7 cut(s) 70, 133, 535, 607, 1801, 1813, 2145
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 715, 2511
BstMAI GTCTC 5 cut(s) 690, 902, 1711, 1940, 2717
BstMWI GCNNNNNNNGC 7 cut(s) 100, 112, 1030, 1605, 1620, 2497, 2506
BstNI CCWGG 4 cut(s) 486, 507, 1656, 2720
BstNSI RCATGY 3 cut(s) 2216, 2483, 2730
BstPI GGTNACC 2 cut(s) 1403, 2326
BstSCI CCNGG 4 cut(s) 484, 505, 1654, 2718
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 1 cut(s) 2648
BstV1I GCAGC 7 cut(s) 115, 187, 634, 746, 1671, 1735, 2827
BstV2I GAAGAC 3 cut(s) 31, 900, 1571
BstX2I RGATCY 6 cut(s) 304, 775, 1067, 1127, 1556, 1820
BstYI RGATCY 6 cut(s) 304, 775, 1067, 1127, 1556, 1820
Bsu36I CCTNAGG 1 cut(s) 2610
BsuRI GGCC 2 cut(s) 1887, 2319
BtgZI GCGATG 2 cut(s) 2236, 2690
BtrI CACGTC 1 cut(s) 632
BtsCI GGATG 7 cut(s) 70, 133, 535, 607, 1801, 1813, 2145
BtsI GCAGTG 2 cut(s) 832, 2380
BtsIMutI CAGTG 5 cut(s) 832, 951, 2380, 2430, 2511
Cac8I GCNNGC 3 cut(s) 566, 959, 1885
CaiI CAGNNNCTG 2 cut(s) 953, 2884
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 2 cut(s) 715, 2511
Cfr10I RCCGGY 1 cut(s) 1923
Cfr13I GGNCC 1 cut(s) 2606
CsiI ACCWGGT 2 cut(s) 484, 505
Csp6I GTAC 4 cut(s) 617, 1398, 2228, 2483
CspCI CAANNNNNGTGG 4 cut(s) 348, 383, 2145, 2180
CviQI GTAC 4 cut(s) 617, 1398, 2228, 2483
DdeI CTNAG 7 cut(s) 194, 396, 522, 981, 1560, 2117, 2610
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 1885, 2317
Eam1104I CTCTTC 5 cut(s) 566, 826, 1830, 2071, 2673
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 5 cut(s) 566, 826, 1830, 2071, 2673
EciI GGCGGA 3 cut(s) 140, 237, 611
Eco24I GRGCYC 1 cut(s) 1601
Eco31I GGTCTC 1 cut(s) 902
Eco32I GATATC 2 cut(s) 586, 1742
Eco47I GGWCC 1 cut(s) 2606
Eco57I CTGAAG 2 cut(s) 2301, 2654
Eco81I CCTNAGG 1 cut(s) 2610
Eco88I CYCGRG 1 cut(s) 1943
Eco91I GGTNACC 2 cut(s) 1403, 2326
EcoO109I RGGNCCY 1 cut(s) 2606
EcoO65I GGTNACC 2 cut(s) 1403, 2326
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 4 cut(s) 484, 505, 1654, 2718
EcoRV GATATC 2 cut(s) 586, 1742
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 1601
Esp3I CGTCTC 1 cut(s) 1711
FaqI GGGAC 1 cut(s) 567
FauI CCCGC 3 cut(s) 950, 1753, 2527
FbaI TGATCA 2 cut(s) 1072, 2233
Fnu4HI GCNGC 8 cut(s) 104, 201, 220, 623, 735, 1660, 1749, 2841
FokI GGATG 7 cut(s) 77, 140, 542, 594, 1808, 1820, 2132
FriOI GRGCYC 1 cut(s) 1601
Fsp4HI GCNGC 8 cut(s) 104, 201, 220, 623, 735, 1660, 1749, 2841
GlaI GCGC 2 cut(s) 714, 2510
GluI GCNGC 8 cut(s) 104, 201, 220, 623, 735, 1660, 1749, 2841
GsaI CCCAGC 2 cut(s) 2645, 2881
GsuI CTGGAG 6 cut(s) 756, 1288, 1788, 2507, 2741, 2865
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 2 cut(s) 1887, 2319
HapII CCGG 4 cut(s) 11, 204, 933, 1924
HhaI GCGC 2 cut(s) 715, 2511
Hin6I GCGC 2 cut(s) 713, 2509
HinP1I GCGC 2 cut(s) 713, 2509
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HpaII CCGG 4 cut(s) 11, 204, 933, 1924
HphI GGTGA 8 cut(s) 110, 293, 1397, 1692, 1736, 2333, 2338, 2641
Hpy166II GTNNAC 4 cut(s) 667, 2228, 2430, 2747
Hpy8I GTNNAC 4 cut(s) 667, 2228, 2430, 2747
HpyAV CCTTC 6 cut(s) 105, 1385, 1500, 1805, 2146, 2677
HpyCH4III ACNGT 6 cut(s) 181, 461, 884, 1572, 2434, 2515
HpyCH4IV ACGT 5 cut(s) 631, 970, 2019, 2230, 2577
HpyF10VI GCNNNNNNNGC 7 cut(s) 100, 112, 1030, 1605, 1620, 2497, 2506
HpyF3I CTNAG 7 cut(s) 194, 396, 522, 981, 1560, 2117, 2610
HpySE526I ACGT 5 cut(s) 631, 970, 2019, 2230, 2577
HspAI GCGC 2 cut(s) 713, 2509
Ksp22I TGATCA 2 cut(s) 1072, 2233
LmnI GCTCC 4 cut(s) 175, 710, 1596, 2488
Lsp1109I GCAGC 7 cut(s) 115, 187, 634, 746, 1671, 1735, 2827
MabI ACCWGGT 2 cut(s) 484, 505
MaeII ACGT 5 cut(s) 631, 970, 2019, 2230, 2577
MaeIII GTNAC 8 cut(s) 41, 886, 1119, 1403, 1410, 1698, 1847, 2326
MfeI CAATTG 1 cut(s) 2157
MflI RGATCY 6 cut(s) 304, 775, 1067, 1127, 1556, 1820
MhlI GDGCHC 2 cut(s) 1601, 2648
MlsI TGGCCA 2 cut(s) 1887, 2319
MluCI AATT 7 cut(s) 245, 1102, 1513, 1536, 2081, 2157, 2621
MluNI TGGCCA 2 cut(s) 1887, 2319
MlyI GAGTC 5 cut(s) 662, 914, 1295, 2055, 2752
MmeI TCCRAC 1 cut(s) 1652
Mox20I TGGCCA 2 cut(s) 1887, 2319
Mph1103I ATGCAT 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 1090
MscI TGGCCA 2 cut(s) 1887, 2319
MseI TTAA 6 cut(s) 147, 258, 405, 1199, 1482, 2766
MslI CAYNNNNRTG 5 cut(s) 1440, 1526, 1794, 2350, 2778
Msp20I TGGCCA 2 cut(s) 1887, 2319
MspA1I CMGCKG 3 cut(s) 737, 1208, 1748
MspI CCGG 4 cut(s) 11, 204, 933, 1924
MspR9I CCNGG 4 cut(s) 486, 507, 1656, 2720
MunI CAATTG 1 cut(s) 2157
Mva1269I GAATGC 1 cut(s) 2785
MvaI CCWGG 4 cut(s) 486, 507, 1656, 2720
MwoI GCNNNNNNNGC 7 cut(s) 100, 112, 1030, 1605, 1620, 2497, 2506
NlaIV GGNNCC 5 cut(s) 798, 1058, 1598, 2246, 2354
NmuCI GTSAC 5 cut(s) 1119, 1403, 1410, 1698, 2326
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 3 cut(s) 2216, 2483, 2730
NspV TTCGAA 1 cut(s) 1866
PaeR7I CTCGAG 1 cut(s) 1943
PagI TCATGA 1 cut(s) 1174
PciI ACATGT 2 cut(s) 2212, 2726
PcsI WCGNNNNNNNCGW 1 cut(s) 1406
PctI GAATGC 1 cut(s) 2785
PdmI GAANNNNTTC 1 cut(s) 1090
PfeI GAWTC 5 cut(s) 50, 346, 1352, 1466, 2038
PflMI CCANNNNNTGG 2 cut(s) 1634, 2884
PfoI TCCNGGA 1 cut(s) 2718
PkrI GCNGC 8 cut(s) 105, 202, 221, 624, 736, 1661, 1750, 2842
PleI GAGTC 5 cut(s) 662, 913, 1295, 2055, 2752
PpsI GAGTC 5 cut(s) 662, 913, 1295, 2055, 2752
Ppu21I YACGTR 1 cut(s) 2231
PpuMI RGGWCCY 1 cut(s) 2606
PscI ACATGT 2 cut(s) 2212, 2726
Psp1406I AACGTT 1 cut(s) 2577
Psp5II RGGWCCY 1 cut(s) 2606
Psp6I CCWGG 4 cut(s) 484, 505, 1654, 2718
PspEI GGTNACC 2 cut(s) 1403, 2326
PspFI CCCAGC 2 cut(s) 2641, 2877
PspGI CCWGG 4 cut(s) 484, 505, 1654, 2718
PspN4I GGNNCC 5 cut(s) 798, 1058, 1598, 2246, 2354
PspPI GGNCC 1 cut(s) 2606
PspPPI RGGWCCY 1 cut(s) 2606
PsrI GAACNNNNNNTAC 2 cut(s) 1433, 1465
PstNI CAGNNNCTG 2 cut(s) 953, 2884
PsuI RGATCY 6 cut(s) 304, 775, 1067, 1127, 1556, 1820
PvuII CAGCTG 2 cut(s) 737, 1208
RsaI GTAC 4 cut(s) 618, 1399, 2229, 2484
RsaNI GTAC 4 cut(s) 617, 1398, 2228, 2483
RseI CAYNNNNRTG 5 cut(s) 1440, 1526, 1794, 2350, 2778
SaqAI TTAA 6 cut(s) 147, 258, 405, 1199, 1482, 2766
SatI GCNGC 8 cut(s) 104, 201, 220, 623, 735, 1660, 1749, 2841
Sau96I GGNCC 1 cut(s) 2606
SchI GAGTC 5 cut(s) 662, 914, 1295, 2055, 2752
ScrFI CCNGG 4 cut(s) 486, 507, 1656, 2720
SduI GDGCHC 2 cut(s) 1601, 2648
SexAI ACCWGGT 2 cut(s) 484, 505
SfcI CTRYAG 1 cut(s) 1209
Sfr274I CTCGAG 1 cut(s) 1943
SfuI TTCGAA 1 cut(s) 1866
SinI GGWCC 1 cut(s) 2606
SlaI CTCGAG 1 cut(s) 1943
SmiMI CAYNNNNRTG 5 cut(s) 1440, 1526, 1794, 2350, 2778
SmlI CTYRAG 2 cut(s) 134, 1943
SmoI CTYRAG 2 cut(s) 134, 1943
Sse9I AATT 7 cut(s) 245, 1102, 1513, 1536, 2081, 2157, 2621
SsiI CCGC 7 cut(s) 125, 219, 222, 596, 957, 1746, 2534
SspI AATATT 1 cut(s) 1363
StyD4I CCNGG 4 cut(s) 484, 505, 1654, 2718
TaaI ACNGT 6 cut(s) 181, 461, 884, 1572, 2434, 2515
TaiI ACGT 5 cut(s) 634, 973, 2022, 2233, 2580
TaqI TCGA 4 cut(s) 993, 1381, 1866, 1944
TaqII GACCGA 2 cut(s) 43, 453
TasI AATT 7 cut(s) 245, 1102, 1513, 1536, 2081, 2157, 2621
TatI WGTACW 2 cut(s) 616, 2482
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 5 cut(s) 50, 346, 1352, 1466, 2038
Tru1I TTAA 6 cut(s) 147, 258, 405, 1199, 1482, 2766
Tru9I TTAA 6 cut(s) 147, 258, 405, 1199, 1482, 2766
TscAI CASTG 5 cut(s) 832, 958, 2387, 2437, 2518
TseFI GTSAC 5 cut(s) 1119, 1403, 1410, 1698, 2326
TseI GCWGC 7 cut(s) 103, 200, 622, 734, 1659, 1748, 2840
Tsp45I GTSAC 5 cut(s) 1119, 1403, 1410, 1698, 2326
TspGWI ACGGA 1 cut(s) 2817
TspRI CASTG 5 cut(s) 832, 958, 2387, 2437, 2518
Van91I CCANNNNNTGG 2 cut(s) 1634, 2884
VpaK11BI GGWCC 1 cut(s) 2606
XapI RAATTY 3 cut(s) 245, 1102, 1536
XbaI TCTAGA 2 cut(s) 758, 2173
XceI RCATGY 3 cut(s) 2216, 2483, 2730
XcmI CCANNNNNNNNNTGG 2 cut(s) 1616, 2456
XhoI CTCGAG 1 cut(s) 1943
XmnI GAANNNNTTC 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.