Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002776

Physical Location & Seq

Genomic Coordinates Forward (+)

44367155 .. 44374843

Gene Structure 7689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGGTTACTGATACGTATTCGAAGATGATGTCCGAGATGTCAATGCGATCCATGCTTAAGAACAACGGCGATTACAGTGAAGATTTGAGCCTTCTGATTCGTCAGCAGAGGCAAGAAGTGAGTGAGCGAGAGAAGGAGCTCAATCCATACAGAAGTGGGTCGGCCCCACCAACCGTAGAAGGGTCGCTGAACGCCGTCGGCGGTCTTTTTGACGCCGTTAACGGCTTTGCGAGCGAGGAGGAGCTAAGGGCTGATCCGGCTTATCATAGCTACTACTACGCCAATGTCAATCTCAATCCGCGGCTACCGCCGCCGCTGAGGTCCAAGGAGGACTGGCGGTTTGCGCAGCGGGGCGGCGCCGGAGGAGGTTCTGGGGTCGGAGGCATTGGGGATAGGAGGAAAGGCGGGAGGGGTGGTGGTGGTGAAGGGTCGCTTTTTTCGGTGCAGCCGGAGAATGGGGCGGCGGCGAGGAATGGAGAGTGGGGCGGAGATGGGCTGATTGGGTTGCCCGGGTTGGGCCTTGGGAGTAGGCAGAAGAGTATTGCCGAGATTCTTCAGGATGATATACAGAATACAACTGGCTCAAGGCACCCTTCTCGTCCAGCTAGCCGGAATGCATTTGATGATGGTGTTGAAACTTCAGATACCCAGTATGCTCAGATGCATCGTGATTTGGCATCTTTAGATGCTTTGCGCTCTGGTGGAAATAAGCAGGGTATGTCTACTGCCCAGAACTTTGGTTCCTCAGGCTCTCATACTTATGCTTCTGCTCTAGGTGGCTCACTGTCAAGAAGCACCACACCAGATCCTCAGCTTGTATCTAGGGCTCCTAGTCCCCGGATTCCACCAGTTGGAGGAGGAAGAGCTCCTTCCACTGATAAAAATAGTGTGGGTGGTCAAAATTCATATAATGGTATCGCATCCAATGTGAAAGAGTCTGCAGATCTGGTAGCTGCCTTATCTGGTATGAACCTGTCAAAAAACAGTAGGATGCATGAAGAGAATCATGCACATTCACAGATTCAAGGTGATAACCACTTTGATATGCAAGGGGATCGGAACCATATTAAACAAAATTCATATATGAACAGGCCTGATTCAGGGAATTATCATTTGCATTCTGTTTCCCAGTCTACCAAAAACTCTTATCAGAATATGGCCAAAGGCAGTGGATTTGGGAGGGACCAGAACAACCCTTCACTGATGTCTGATGGGCTAGCTGAAATTAACAATCCTGCTGTATCTTCTGCTAACTCATACTTGAGAGGACCCTCTGCCCCAGCTCTTAATGGCCGAGGAAGCTCAGTCTCTCACTATCAGAATGTAGACGGTATGAATTCCTCATTTGCAAACTATGGGTTAGCTGGGTATTCTGTTAGTCCATCGTCACCCTCCATGATGGGGAGCCCACTGGGTAATGGTAATTTACCACCCTTGTTTGAAAATGCTGCTGCTGTTTCTGCAATGGGTGGCTTGGACTCTGGAGCCTTTGGAGGAGGTATGTCTCTGGGACCAAATTTGTTAGCAGCAGCTGCTGAATTGCAGAATATGGGGAGGGGCGGAAATCACACTGCCGGAGGTGCTCTTCAGATGCCCCTGATGGACCCCTTGTATCTGCAGTATTTAAGATCAAATGAGTATGCTGCTGCACAGCTTGCATCCCATCATGACCCCACAGCAGACAGGGAAGGCATGTATGTGGACTTTCTGGGGTTGCAAAAAGCTTATCTGGGACAATTACTTTCGCCTCAAAAATCACAGTTTGGTGCTCCCTACATGGGTAAGTCTGGTAGCTTGAATCATGGTTATTATGGAAATCCAGCATTTGGGCTTGGTATGTCTTATTCTGGAAGTCCCCTTCTTCCAAACTCTCCCATTGGACCAGGTAGTCCTGTCAGACACAGTGACAGGAACTTGCGTTTTTCTTCGGGGATGAGGAACATGAGTGGAGGTCTCATGGGAGCTTGGCACTCTGAAACTGGTGGAAATTTCGATGAAAGTTTTGCATCCTCTTTGCTAGATGAGTTCAAGAGCAATAAGACTAAATGTTTTGAACTTTCAGAAATTTCAGGCCATGTTGTTGAGTTCAGTGCGGACCAGTATGGGAGTAGGTTCATTCAACAGAAACTTGAAACTGCCACAACCGAAGAAAAGAACATGGTTTTTGATGAAATTATGCCCCAAGCCCTTTCTTTGATGACTGATGTGTTTGGTAATTATGTGATTCAGAAGTTTTTCGAGCACGGTTCTGCAGCACAAATTAGAGAACTGGCTGACCAGCTCACTGGGCATGTGCTGACCCTTAGCCTTCAAATGTATGGCTGTCGAGTGATCCAGAAGGTATGTTCAGTCAGTTGTGGCAGTGACATGTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

792

Amino Acids

84.28

Weight (kDa)

6.04

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	275 - 687	2.3e-149	Nucleic acid binding protein NABP
PUF	PF00806	692 - 726	5.9e-12	Pumilio-family RNA binding repeat
PUF	PF00806	729 - 761	3.5e-08	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29140 AT2G29140 AT2G29190 AT2G29190 AT2G29200 AT2G29200
fragaria_vesca	FvH4_3g36870 FvH4_7g22880 FvH4_7g22880
malus_domestica	MD01G1136900.v1.1 MD03G1087000.v1.1 MD07G1201900.v1.1 MD11G1096100.v1.1
prunus_persica	Prupe.2G238500_v2.0.a1 Prupe.2G238500_v2.0.a1 Prupe.6G071600_v2.0.a1
pyrus_communis	pycom01g15770 pycom07g18890 pycom11g08140
rosa_chinensis	RchiOBHm_Chr1g0368031 RchiOBHm_Chr5g0066091
rosa_laevigata	RLG00000027244 RLG00000035840
rosa_multiflora	Rmu_sc0002406.1_g000007 Rmu_sc0011946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014920 Rroxscaffold_4G00288920
rosa_rugosa	Rorug01G0338500 Rorug05G0376200
rosa_samantha	Rh1AG345400 Rh1BG307700 Rh1CG323300 Rh1DG339800 Rh5AG434700 Rh5BG451000 Rh5CG473300 Rh5DG464600
rosa_wichuraiana	Rw1G030740 Rw5G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1887
Acc16I	TGCGCA	1 cut(s)	345
AccB1I	GGYRCC	2 cut(s)	356, 588
AccB7I	CCANNNNNTGG	2 cut(s)	851, 1826
AccI	GTMKAC	3 cut(s)	722, 1133, 1326
AccII	CGCG	1 cut(s)	301
AclWI	GGATC	5 cut(s)	42, 248, 800, 1062, 2326
AcoI	YGGCCR	2 cut(s)	1158, 1291
AcsI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1987, 2064
AcuI	CTGAAG	3 cut(s)	539, 624, 1571
AcyI	GRCGYC	2 cut(s)	213, 357
AfiI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1778, 1826
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	2367
AgsI	TTSAA	9 cut(s)	635, 1025, 1442, 1798, 2029, 2054, 2120, 2132, 2312
AjnI	CCWGG	1 cut(s)	1882
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
Alw21I	GWGCWC	5 cut(s)	141, 868, 1585, 1771, 2244
Alw26I	GTCTC	3 cut(s)	1312, 1509, 1958
AlwI	GGATC	5 cut(s)	42, 248, 800, 1062, 2326
AlwNI	CAGNNNCTG	2 cut(s)	1532, 1535
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	6 cut(s)	162, 517, 1091, 1158, 1291, 2071
ApoI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1987, 2064
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 323, 355
Asp700I	GAANNNNTTC	1 cut(s)	2234
AspLEI	GCGC	3 cut(s)	346, 359, 696
AspS9I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1880, 2095
AsuC2I	CCSGG	3 cut(s)	510, 511, 838
AsuHPI	GGTGA	3 cut(s)	434, 1040, 1380
AsuII	TTCGAA	1 cut(s)	20
AsuNHI	GCTAGC	2 cut(s)	605, 1216
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1880, 2095
AxyI	CCTNAGG	1 cut(s)	745
BalI	TGGCCA	1 cut(s)	1160
BanI	GGYRCC	2 cut(s)	356, 588
BanII	GRGCYC	4 cut(s)	141, 829, 868, 1409
Bbv12I	GWGCWC	5 cut(s)	141, 868, 1585, 1771, 2244
BbvCI	CCTCAGC	2 cut(s)	317, 810
BccI	CCATC	7 cut(s)	485, 620, 1205, 1390, 1393, 1594, 1671
BceAI	ACGGC	4 cut(s)	82, 179, 200, 238
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 1037, 1071
BciT130I	CCWGG	1 cut(s)	1884
BcnI	CCSGG	3 cut(s)	510, 511, 838
BcoDI	GTCTC	3 cut(s)	1312, 1509, 1958
BfaI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2018
BfmI	CTRYAG	3 cut(s)	939, 1616, 2250
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	56
BglII	AGATCT	1 cut(s)	943
Bme1390I	CCNGG	4 cut(s)	510, 511, 838, 1884
Bme18I	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1880, 2095
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1880, 2095
BmrFI	CCNGG	4 cut(s)	510, 511, 838, 1884
BmrI	ACTGGG	4 cut(s)	643, 1123, 1421, 2295
BmsI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1667, 2015
BmtI	GCTAGC	2 cut(s)	609, 1220
BmuI	ACTGGG	4 cut(s)	643, 1123, 1421, 2295
BpmI	CTGGAG	1 cut(s)	1503
Bpu10I	CCTNAGC	4 cut(s)	245, 317, 810, 2303
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	568, 1282
BpuMI	CCSGG	3 cut(s)	510, 511, 838
BsaAI	YACGTR	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	213, 357
BsaI	GGTCTC	1 cut(s)	1958
BsaJI	CCNNGG	6 cut(s)	299, 324, 509, 520, 836, 1294
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1778, 1826
Bse21I	CCTNAGG	1 cut(s)	745
Bse3DI	GCAATG	1 cut(s)	1470
BseBI	CCWGG	1 cut(s)	1884
BseDI	CCNNGG	6 cut(s)	299, 324, 509, 520, 836, 1294
BseGI	GGATG	6 cut(s)	565, 920, 996, 1658, 1938, 2006
BseLI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1778, 1826
BseMI	GCAATG	1 cut(s)	1470
BseMII	CTCAG	5 cut(s)	308, 671, 759, 824, 1317
BseRI	GAGGAG	5 cut(s)	251, 254, 378, 870, 1509
BseYI	CCCAGC	2 cut(s)	1279, 1364
BsgI	GTGCAG	2 cut(s)	464, 1632
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	6 cut(s)	164, 519, 1093, 1160, 1293, 2073
BshNI	GGYRCC	2 cut(s)	356, 588
BsiHKAI	GWGCWC	5 cut(s)	141, 868, 1585, 1771, 2244
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
BslFI	GGGAC	5 cut(s)	819, 1196, 1524, 1746, 1839
BslI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1778, 1826
BsmAI	GTCTC	3 cut(s)	1312, 1509, 1958
BsmFI	GGGAC	5 cut(s)	819, 1196, 1524, 1746, 1839
BsmI	GAATGC	2 cut(s)	619, 1117
BsnI	GGCC	6 cut(s)	164, 519, 1093, 1160, 1293, 2073
Bso31I	GGTCTC	1 cut(s)	1958
BsoBI	CYCGRG	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	7 cut(s)	141, 829, 868, 1409, 1585, 1771, 2244
Bsp143I	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
BspANI	GGCC	6 cut(s)	164, 519, 1093, 1160, 1293, 2073
BspCNI	CTCAG	5 cut(s)	309, 670, 758, 823, 1316
BspFNI	CGCG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	1666
BspMAI	CTGCAG	3 cut(s)	943, 1620, 2254
BspOI	GCTAGC	2 cut(s)	609, 1220
BspPI	GGATC	5 cut(s)	42, 248, 800, 1062, 2326
BspQI	GCTCTTC	2 cut(s)	856, 1590
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	356, 588
BspTI	CTTAAG	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	1958
BsrDI	GCAATG	1 cut(s)	1470
BssECI	CCNNGG	6 cut(s)	299, 324, 509, 520, 836, 1294
BssMI	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
BssNI	GRCGYC	2 cut(s)	213, 357
BssT1I	CCWWGG	2 cut(s)	324, 520
Bst2UI	CCWGG	1 cut(s)	1884
Bst4CI	ACNGT	8 cut(s)	77, 175, 786, 986, 1331, 1761, 1904, 2246
Bst6I	CTCTTC	4 cut(s)	530, 856, 993, 1590
BstACI	GRCGYC	2 cut(s)	213, 357
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	1532, 1655
BstBAI	YACGTR	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	232, 607, 1218, 1656
BstDEI	CTNAG	7 cut(s)	245, 317, 657, 745, 810, 1303, 2303
BstDSI	CCRYGG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	1098
BstF5I	GGATG	6 cut(s)	565, 920, 996, 1658, 1938, 2006
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	3 cut(s)	346, 359, 696
BstKTI	GATC	7 cut(s)	50, 256, 808, 946, 1057, 1631, 2334
BstMAI	GTCTC	3 cut(s)	1312, 1509, 1958
BstMBI	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
BstNI	CCWGG	1 cut(s)	1884
BstNSI	RCATGY	3 cut(s)	1696, 2294, 2371
BstSCI	CCNGG	4 cut(s)	508, 509, 836, 1882
BstSFI	CTRYAG	3 cut(s)	939, 1616, 2250
BstSNI	TACGTA	1 cut(s)	15
BstUI	CGCG	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	805, 943
BstXI	CCANNNNNNTGG	2 cut(s)	737, 2285
BstYI	RGATCY	2 cut(s)	805, 943
Bsu36I	CCTNAGG	1 cut(s)	745
BsuRI	GGCC	6 cut(s)	164, 519, 1093, 1160, 1293, 2073
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	6 cut(s)	565, 920, 996, 1658, 1938, 2006
BtsI	GCAGTG	3 cut(s)	1174, 1569, 2368
Cac8I	GCNNGC	4 cut(s)	232, 607, 1218, 1656
CaiI	CAGNNNCTG	2 cut(s)	1532, 1535
CciI	TCATGA	1 cut(s)	1666
CfoI	GCGC	3 cut(s)	346, 359, 696
Cfr13I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1880, 2095
Cfr42I	CCGCGG	1 cut(s)	302
Cfr9I	CCCGGG	1 cut(s)	509
CseI	GACGC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	1882
CspCI	CAANNNNNGTGG	2 cut(s)	1150, 1185
DdeI	CTNAG	7 cut(s)	245, 317, 657, 745, 810, 1303, 2303
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	7 cut(s)	49, 255, 807, 945, 1056, 1630, 2333
DpnII	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
DrdI	GACNNNNNNGTC	1 cut(s)	1887
DseDI	GACNNNNNNGTC	1 cut(s)	1887
EaeI	YGGCCR	2 cut(s)	1158, 1291
Eam1104I	CTCTTC	4 cut(s)	530, 856, 993, 1590
EarI	CTCTTC	4 cut(s)	530, 856, 993, 1590
EciI	GGCGGA	2 cut(s)	501, 1575
Ecl136II	GAGCTC	2 cut(s)	139, 866
Eco105I	TACGTA	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	324, 520
Eco147I	AGGCCT	1 cut(s)	1093
Eco24I	GRGCYC	4 cut(s)	141, 829, 868, 1409
Eco31I	GGTCTC	1 cut(s)	1958
Eco47I	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1880, 2095
Eco53kI	GAGCTC	2 cut(s)	139, 866
Eco57I	CTGAAG	3 cut(s)	539, 624, 1571
Eco81I	CCTNAGG	1 cut(s)	745
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	139, 866
EcoNI	CCTNNNNNAGG	1 cut(s)	1098
EcoO109I	RGGNCCY	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	1336
EcoRII	CCWGG	1 cut(s)	1882
EcoT14I	CCWWGG	2 cut(s)	324, 520
EcoT22I	ATGCAT	3 cut(s)	619, 666, 996
EcoT38I	GRGCYC	4 cut(s)	141, 829, 868, 1409
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	324, 520
FalI	AAGNNNNNCTT	6 cut(s)	417, 449, 577, 609, 853, 885
FaqI	GGGAC	5 cut(s)	819, 1196, 1524, 1746, 1839
FauI	CCCGC	2 cut(s)	342, 398
FblI	GTMKAC	3 cut(s)	722, 1133, 1326
FokI	GGATG	6 cut(s)	572, 907, 1003, 1645, 1945, 1993
FriOI	GRGCYC	4 cut(s)	141, 829, 868, 1409
FspBI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2018
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	3 cut(s)	345, 358, 695
GsaI	CCCAGC	2 cut(s)	1283, 1368
GsuI	CTGGAG	1 cut(s)	1503
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	6 cut(s)	164, 519, 1093, 1160, 1293, 2073
HapII	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	3 cut(s)	346, 359, 696
Hin1I	GRCGYC	2 cut(s)	213, 357
Hin6I	GCGC	3 cut(s)	344, 357, 694
HinP1I	GCGC	3 cut(s)	344, 357, 694
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	1722
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
HphI	GGTGA	3 cut(s)	434, 1040, 1380
Hpy166II	GTNNAC	5 cut(s)	220, 723, 1134, 1327, 1702
Hpy188III	TCNNGA	8 cut(s)	557, 668, 789, 1482, 1667, 1848, 2029, 2335
Hpy8I	GTNNAC	5 cut(s)	220, 723, 1134, 1327, 1702
Hpy99I	CGWCG	1 cut(s)	200
HpyCH4III	ACNGT	8 cut(s)	77, 175, 786, 986, 1331, 1761, 1904, 2246
HpyCH4IV	ACGT	1 cut(s)	14
HpyF3I	CTNAG	7 cut(s)	245, 317, 657, 745, 810, 1303, 2303
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	2 cut(s)	213, 357
HspAI	GCGC	3 cut(s)	344, 357, 694
KasI	GGCGCC	1 cut(s)	356
KspAI	GTTAAC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	302
Kzo9I	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
LguI	GCTCTTC	2 cut(s)	856, 1590
LmnI	GCTCC	8 cut(s)	136, 241, 832, 871, 1404, 1484, 1774, 1961
LweI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1667, 2015
MabI	ACCWGGT	1 cut(s)	1882
MaeI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2018
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	4 cut(s)	4, 1386, 1904, 2363
MalI	GATC	7 cut(s)	49, 255, 807, 945, 1056, 1630, 2333
MboI	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
MflI	RGATCY	2 cut(s)	805, 943
MhlI	GDGCHC	7 cut(s)	141, 829, 868, 1409, 1585, 1771, 2244
MlsI	TGGCCA	1 cut(s)	1160
MluNI	TGGCCA	1 cut(s)	1160
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	944, 1472
MmeI	TCCRAC	2 cut(s)	358, 832
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	3 cut(s)	619, 666, 996
MroXI	GAANNNNTTC	1 cut(s)	2234
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
MslI	CAYNNNNRTG	2 cut(s)	759, 1697
Msp20I	TGGCCA	1 cut(s)	1160
MspA1I	CMGCKG	4 cut(s)	301, 316, 349, 1532
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
MspR9I	CCNGG	4 cut(s)	510, 511, 838, 1884
Mva1269I	GAATGC	2 cut(s)	619, 1117
MvaI	CCWGG	1 cut(s)	1884
MvnI	CGCG	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	357
NciI	CCSGG	3 cut(s)	510, 511, 838
NdeII	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
NheI	GCTAGC	2 cut(s)	605, 1216
NmeAIII	GCCGAG	2 cut(s)	571, 1319
NmuCI	GTSAC	3 cut(s)	1386, 1904, 2363
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	3 cut(s)	619, 666, 996
NspI	RCATGY	3 cut(s)	1696, 2294, 2371
NspV	TTCGAA	1 cut(s)	20
PagI	TCATGA	1 cut(s)	1666
PceI	AGGCCT	1 cut(s)	1093
PciI	ACATGT	1 cut(s)	2367
PciSI	GCTCTTC	2 cut(s)	856, 1590
PctI	GAATGC	2 cut(s)	619, 1117
PdmI	GAANNNNTTC	1 cut(s)	2234
PfeI	GAWTC	8 cut(s)	97, 550, 841, 1003, 1021, 1097, 1798, 2224
PflMI	CCANNNNNTGG	2 cut(s)	851, 1826
PleI	GAGTC	2 cut(s)	943, 1472
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	943, 1472
Ppu21I	YACGTR	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	1268
PscI	ACATGT	1 cut(s)	2367
Psp124BI	GAGCTC	2 cut(s)	141, 868
Psp5II	RGGWCCY	1 cut(s)	1268
Psp6I	CCWGG	1 cut(s)	1882
PspFI	CCCAGC	2 cut(s)	1279, 1364
PspGI	CCWGG	1 cut(s)	1882
PspPI	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1880, 2095
PspPPI	RGGWCCY	1 cut(s)	1268
PstI	CTGCAG	3 cut(s)	943, 1620, 2254
PstNI	CAGNNNCTG	2 cut(s)	1532, 1535
PsuI	RGATCY	2 cut(s)	805, 943
PvuII	CAGCTG	1 cut(s)	1532
RseI	CAYNNNNRTG	2 cut(s)	759, 1697
SacI	GAGCTC	2 cut(s)	141, 868
SacII	CCGCGG	1 cut(s)	302
SapI	GCTCTTC	2 cut(s)	856, 1590
SaqAI	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
Sau3AI	GATC	7 cut(s)	47, 253, 805, 943, 1054, 1628, 2331
Sau96I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1880, 2095
SchI	GAGTC	2 cut(s)	944, 1472
ScrFI	CCNGG	4 cut(s)	510, 511, 838, 1884
SduI	GDGCHC	7 cut(s)	141, 829, 868, 1409, 1585, 1771, 2244
SexAI	ACCWGGT	1 cut(s)	1882
SfaNI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1667, 2015
SfcI	CTRYAG	3 cut(s)	939, 1616, 2250
SfoI	GGCGCC	1 cut(s)	358
Sfr303I	CCGCGG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	302
SinI	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1880, 2095
SmaI	CCCGGG	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	759, 1697
SmlI	CTYRAG	3 cut(s)	56, 583, 1261
SmoI	CTYRAG	3 cut(s)	56, 583, 1261
SnaBI	TACGTA	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	1093
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2018
SstI	GAGCTC	2 cut(s)	141, 868
StuI	AGGCCT	1 cut(s)	1093
StyD4I	CCNGG	4 cut(s)	508, 509, 836, 1882
StyI	CCWWGG	2 cut(s)	324, 520
TaaI	ACNGT	8 cut(s)	77, 175, 786, 986, 1331, 1761, 1904, 2246
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	20, 1992, 2238, 2326
TauI	GCSGC	6 cut(s)	304, 313, 316, 357, 464, 467
TfiI	GAWTC	8 cut(s)	97, 550, 841, 1003, 1021, 1097, 1798, 2224
Tru1I	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
Tru9I	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
TseFI	GTSAC	3 cut(s)	1386, 1904, 2363
Tsp45I	GTSAC	3 cut(s)	1386, 1904, 2363
TspDTI	ATGAA	9 cut(s)	894, 983, 1011, 1068, 1100, 1349, 2010, 2104, 2184
TspMI	CCCGGG	1 cut(s)	509
Van91I	CCANNNNNTGG	2 cut(s)	851, 1826
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1880, 2095
XagI	CCTNNNNNAGG	1 cut(s)	1098
XapI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1987, 2064
XceI	RCATGY	3 cut(s)	1696, 2294, 2371
XmaI	CCCGGG	1 cut(s)	509
XmiI	GTMKAC	3 cut(s)	722, 1133, 1326
XmnI	GAANNNNTTC	1 cut(s)	2234
XspI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2018
Zsp2I	ATGCAT	3 cut(s)	619, 666, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.