Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011946.1

Orthogroup ID

OG0002776

Physical Location & Seq

Genomic Coordinates Reverse (-)

47 .. 3037

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011946.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

atggttactgatacgtattcgaagatgatgtccgagatgtcaatgcgatccatgcttaagaacaacggcgattacagtgaagatttgagccttctgattcgtcagcagaggcaagaagtgagcgagcgagagaaggagctcaatccatacagaagtgggtcggccccaccaaccgtagaagggtcgctgaacgccgtcggcggtcttttcgacgccgttaacggctttgcgagcgaggaggagctaagggctgatccggcttatcatagctactactacgccaatgtcaatctcaatccgcggctaccgccgccgctgaggtccaaggaggactggcggtttgcgcagcggggcggcgccggaggaggttctggggtcggaggcattggggataggaggaaaggcgggaggggtggtagtggtgaagggtcacttttttcggtgcagccggagaatggggcggcggcgaggaatggagagtggggcggagatgggctgattgggttgcccgggttgggccttgggagtaggcagaagagtattgccgagattcttcaggatgatatacagaatacaactggctcaaggcacccttctcgtccagctagccggaatgcatttgatgatggtgttgaaacttcagatacccagtatgctcagatgcatcgtgatttggcatctttagatgctttgcgctctggtggaaataagcagggtatgtctgctgcccagaactttggttcctcgggctctcatacttatgcttctgctctaggtggctcactgtcaagaagcaccacaccagatcctcagcttgtatctagggctcctagtccccggattccaccagttggaggaggaagagctccttccactgataaaaatagtgtcggtggtcaaaattcatataatggtatcgcatccaatgtgaaagagtctgcagatctggtagctgccttatctggtatgaacctgtcaaaaaacagtaggatgcatgaagagaatcatgcacattcacagattcaaggtgataaccactttgatatgcaaggggatcggaaccatattaaacaaaattcatatatgaacaagcctgattcagggaattatcatttgcattctgtttcccagtctaccaaaaactcttatcagaatatggccaaaggcagtggatttgggagggaccagaacaacccttcactgatgtctgatgggctagctgaaattaacaatcctgctgtatcttctgctaactcatacttgagaggaccctctgccccagctcttaatggccgaggaagctcagtctctcactatcagagtgtagacggtatgaattcctcatttgcaaactatgggttagctgggtattctgttagtccatcgtcaccctccatgatggggagcccactgggtaatggtaatttaccacccttgtttgaaaatgctgctgctgtttctgcaatgggtggcttggactctggagcctttggaggaggtatgtctctgggaccaaatttgttagcagcagctgctgaattgcagaatatggggaggggtggaaatcatgctgccggaggtgcccttcagatgcccctgatggaccccttgtatctgcagtatttaagatcaaatgagtatgctgctgctgcacagcttgcatcccttcatgaccccacagcagacagggaaggcatgtatgtggactttctggggttgcaaaaagcttatctgggacaattactttcgcctcaaaaatcacagtttggtgctccctacatgggtaagtctggtagcttgaatcatggttattatggaaatccagcatttgggcttggtatgtcttattctggaagtccccttcttccaaactctcccgttggaccaggtagtcctgtcagacacagtgacaggaacttgcgtttttcttcggggatgaggaacatgagtggaggtctcatgggagcttggcactctgaaactggtggaaatttcgatgaaagttttgcatcctctttgctagatgagttcaagagcaataagactaaatgttttgaactttcagaaatttcaggccatgttgttgagttcagtgcggaccagtatgggagtaggttcattcaacagaaacttgaaactgccacaaccgaagaaaagaacatggtttttgatgaaattatgccccaagccctttctttgatgactgatgtgtttggtaattatgtgattcagaaggtgatttctcactccctcgtagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

753

Amino Acids

79.81

Weight (kDa)

5.97

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29140 AT2G29140 AT2G29190 AT2G29190 AT2G29200 AT2G29200
fragaria_vesca	FvH4_3g36870 FvH4_7g22880 FvH4_7g22880
malus_domestica	MD01G1136900.v1.1 MD03G1087000.v1.1 MD07G1201900.v1.1 MD11G1096100.v1.1
prunus_persica	Prupe.2G238500_v2.0.a1 Prupe.2G238500_v2.0.a1 Prupe.6G071600_v2.0.a1
pyrus_communis	pycom01g15770 pycom07g18890 pycom11g08140
rosa_chinensis	RchiOBHm_Chr1g0368031 RchiOBHm_Chr5g0066091
rosa_laevigata	RLG00000027244 RLG00000035840
rosa_multiflora	Rmu_sc0002406.1_g000007 Rmu_sc0011946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014920 Rroxscaffold_4G00288920
rosa_rugosa	Rorug01G0338500 Rorug05G0376200
rosa_samantha	Rh1AG345400 Rh1BG307700 Rh1CG323300 Rh1DG339800 Rh5AG434700 Rh5BG451000 Rh5CG473300 Rh5DG464600
rosa_wichuraiana	Rw1G030740 Rw5G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1890
Acc16I	TGCGCA	1 cut(s)	345
AccB1I	GGYRCC	3 cut(s)	356, 588, 1580
AccB7I	CCANNNNNTGG	2 cut(s)	851, 1829
AccI	GTMKAC	2 cut(s)	1133, 1326
AccII	CGCG	1 cut(s)	301
AclWI	GGATC	4 cut(s)	42, 248, 800, 1062
AcoI	YGGCCR	2 cut(s)	1158, 1291
AcsI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1990, 2067
AcuI	CTGAAG	3 cut(s)	539, 624, 1571
AcyI	GRCGYC	2 cut(s)	213, 357
AfiI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1781, 1829
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	8 cut(s)	635, 1025, 1442, 1801, 2032, 2057, 2123, 2135
AjnI	CCWGG	1 cut(s)	1885
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
Alw21I	GWGCWC	3 cut(s)	141, 868, 1774
Alw26I	GTCTC	3 cut(s)	1312, 1509, 1961
AlwI	GGATC	4 cut(s)	42, 248, 800, 1062
AlwNI	CAGNNNCTG	2 cut(s)	1532, 1535
Ama87I	CYCGRG	2 cut(s)	509, 745
AoxI	GGCC	5 cut(s)	162, 517, 1158, 1291, 2074
ApoI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1990, 2067
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 323, 355
AspLEI	GCGC	3 cut(s)	346, 359, 696
AspS9I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1883, 2098
AsuC2I	CCSGG	3 cut(s)	510, 511, 838
AsuHPI	GGTGA	4 cut(s)	434, 1040, 1380, 2248
AsuII	TTCGAA	1 cut(s)	20
AsuNHI	GCTAGC	2 cut(s)	605, 1216
AvaI	CYCGRG	2 cut(s)	509, 745
AvaII	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1883, 2098
BaeGI	GKGCMC	1 cut(s)	1585
BalI	TGGCCA	1 cut(s)	1160
BanI	GGYRCC	3 cut(s)	356, 588, 1580
BanII	GRGCYC	5 cut(s)	141, 752, 829, 868, 1409
Bbv12I	GWGCWC	3 cut(s)	141, 868, 1774
BbvCI	CCTCAGC	2 cut(s)	317, 810
BccI	CCATC	6 cut(s)	485, 620, 1205, 1390, 1393, 1594
BceAI	ACGGC	4 cut(s)	82, 179, 200, 238
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 1037, 1071
BciT130I	CCWGG	1 cut(s)	1887
BcnI	CCSGG	3 cut(s)	510, 511, 838
BcoDI	GTCTC	3 cut(s)	1312, 1509, 1961
BfaI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2021
BfmI	CTRYAG	2 cut(s)	939, 1616
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	56
BglII	AGATCT	1 cut(s)	943
Bme1390I	CCNGG	4 cut(s)	510, 511, 838, 1887
Bme18I	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1883, 2098
BmeT110I	CYCGRG	2 cut(s)	509, 745
BmgT120I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1883, 2098
BmrFI	CCNGG	4 cut(s)	510, 511, 838, 1887
BmrI	ACTGGG	3 cut(s)	643, 1123, 1421
BmsI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1670, 2018
BmtI	GCTAGC	2 cut(s)	609, 1220
BmuI	ACTGGG	3 cut(s)	643, 1123, 1421
BpmI	CTGGAG	1 cut(s)	1503
Bpu10I	CCTNAGC	3 cut(s)	245, 317, 810
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	568, 1282
BpuMI	CCSGG	3 cut(s)	510, 511, 838
BsaAI	YACGTR	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	213, 357
BsaI	GGTCTC	1 cut(s)	1961
BsaJI	CCNNGG	7 cut(s)	299, 324, 509, 520, 744, 836, 1294
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1781, 1829
Bse1I	ACTGG	8 cut(s)	338, 583, 649, 848, 1129, 1416, 1987, 2101
Bse3DI	GCAATG	1 cut(s)	1470
BseBI	CCWGG	1 cut(s)	1887
BseDI	CCNNGG	7 cut(s)	299, 324, 509, 520, 744, 836, 1294
BseGI	GGATG	6 cut(s)	565, 920, 996, 1661, 1941, 2009
BseLI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1781, 1829
BseMI	GCAATG	1 cut(s)	1470
BseMII	CTCAG	4 cut(s)	308, 671, 824, 1317
BseNI	ACTGG	8 cut(s)	338, 583, 649, 848, 1129, 1416, 1987, 2101
BseRI	GAGGAG	5 cut(s)	251, 254, 378, 870, 1509
BseSI	GKGCMC	1 cut(s)	1585
BseYI	CCCAGC	2 cut(s)	1279, 1364
BsgI	GTGCAG	2 cut(s)	464, 1635
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	164, 519, 1160, 1293, 2076
BshNI	GGYRCC	3 cut(s)	356, 588, 1580
BsiHKAI	GWGCWC	3 cut(s)	141, 868, 1774
BsiHKCI	CYCGRG	2 cut(s)	509, 745
BsiSI	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
BslFI	GGGAC	5 cut(s)	819, 1196, 1524, 1749, 1842
BslI	CCNNNNNNNGG	9 cut(s)	180, 455, 515, 851, 854, 1100, 1401, 1781, 1829
BsmAI	GTCTC	3 cut(s)	1312, 1509, 1961
BsmFI	GGGAC	5 cut(s)	819, 1196, 1524, 1749, 1842
BsmI	GAATGC	2 cut(s)	619, 1117
BsnI	GGCC	5 cut(s)	164, 519, 1160, 1293, 2076
Bso31I	GGTCTC	1 cut(s)	1961
BsoBI	CYCGRG	2 cut(s)	509, 745
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	7 cut(s)	141, 752, 829, 868, 1409, 1585, 1774
Bsp143I	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
BspANI	GGCC	5 cut(s)	164, 519, 1160, 1293, 2076
BspCNI	CTCAG	4 cut(s)	309, 670, 823, 1316
BspFNI	CGCG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	1669
BspMAI	CTGCAG	2 cut(s)	943, 1620
BspOI	GCTAGC	2 cut(s)	609, 1220
BspPI	GGATC	4 cut(s)	42, 248, 800, 1062
BspQI	GCTCTTC	1 cut(s)	856
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	3 cut(s)	356, 588, 1580
BspTI	CTTAAG	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	1961
BsrDI	GCAATG	1 cut(s)	1470
BsrI	ACTGG	8 cut(s)	338, 583, 649, 848, 1129, 1416, 1987, 2101
BssECI	CCNNGG	7 cut(s)	299, 324, 509, 520, 744, 836, 1294
BssMI	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
BssNI	GRCGYC	2 cut(s)	213, 357
BssT1I	CCWWGG	2 cut(s)	324, 520
Bst2UI	CCWGG	1 cut(s)	1887
Bst4CI	ACNGT	7 cut(s)	77, 175, 786, 986, 1331, 1764, 1907
Bst6I	CTCTTC	3 cut(s)	530, 856, 993
BstACI	GRCGYC	2 cut(s)	213, 357
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	1532, 1658
BstBAI	YACGTR	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	5 cut(s)	125, 232, 607, 1218, 1659
BstDEI	CTNAG	5 cut(s)	245, 317, 657, 810, 1303
BstDSI	CCRYGG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	1098
BstF5I	GGATG	6 cut(s)	565, 920, 996, 1661, 1941, 2009
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	3 cut(s)	346, 359, 696
BstKTI	GATC	6 cut(s)	50, 256, 808, 946, 1057, 1631
BstMAI	GTCTC	3 cut(s)	1312, 1509, 1961
BstMBI	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
BstNI	CCWGG	1 cut(s)	1887
BstNSI	RCATGY	1 cut(s)	1699
BstSCI	CCNGG	4 cut(s)	508, 509, 836, 1885
BstSFI	CTRYAG	2 cut(s)	939, 1616
BstSLI	GKGCMC	1 cut(s)	1585
BstSNI	TACGTA	1 cut(s)	15
BstUI	CGCG	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	805, 943
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	2 cut(s)	805, 943
BsuRI	GGCC	5 cut(s)	164, 519, 1160, 1293, 2076
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	6 cut(s)	565, 920, 996, 1661, 1941, 2009
BtsI	GCAGTG	1 cut(s)	1174
BtsIMutI	CAGTG	8 cut(s)	82, 782, 873, 1174, 1199, 1409, 1912, 2098
Cac8I	GCNNGC	5 cut(s)	125, 232, 607, 1218, 1659
CaiI	CAGNNNCTG	2 cut(s)	1532, 1535
CciI	TCATGA	1 cut(s)	1669
CfoI	GCGC	3 cut(s)	346, 359, 696
Cfr13I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1883, 2098
Cfr42I	CCGCGG	1 cut(s)	302
Cfr9I	CCCGGG	1 cut(s)	509
CseI	GACGC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	1885
CspCI	CAANNNNNGTGG	2 cut(s)	1150, 1185
DdeI	CTNAG	5 cut(s)	245, 317, 657, 810, 1303
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	6 cut(s)	49, 255, 807, 945, 1056, 1630
DpnII	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
DrdI	GACNNNNNNGTC	1 cut(s)	1890
DseDI	GACNNNNNNGTC	1 cut(s)	1890
EaeI	YGGCCR	2 cut(s)	1158, 1291
Eam1104I	CTCTTC	3 cut(s)	530, 856, 993
EarI	CTCTTC	3 cut(s)	530, 856, 993
EciI	GGCGGA	1 cut(s)	501
Ecl136II	GAGCTC	2 cut(s)	139, 866
Eco105I	TACGTA	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	324, 520
Eco24I	GRGCYC	5 cut(s)	141, 752, 829, 868, 1409
Eco31I	GGTCTC	1 cut(s)	1961
Eco47I	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1883, 2098
Eco53kI	GAGCTC	2 cut(s)	139, 866
Eco57I	CTGAAG	3 cut(s)	539, 624, 1571
Eco88I	CYCGRG	2 cut(s)	509, 745
EcoICRI	GAGCTC	2 cut(s)	139, 866
EcoNI	CCTNNNNNAGG	1 cut(s)	1098
EcoO109I	RGGNCCY	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	1336
EcoRII	CCWGG	1 cut(s)	1885
EcoT14I	CCWWGG	2 cut(s)	324, 520
EcoT22I	ATGCAT	3 cut(s)	619, 666, 996
EcoT38I	GRGCYC	5 cut(s)	141, 752, 829, 868, 1409
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	324, 520
FalI	AAGNNNNNCTT	6 cut(s)	417, 449, 577, 609, 853, 885
FaqI	GGGAC	5 cut(s)	819, 1196, 1524, 1749, 1842
FauI	CCCGC	2 cut(s)	342, 398
FblI	GTMKAC	2 cut(s)	1133, 1326
FokI	GGATG	6 cut(s)	572, 907, 1003, 1648, 1948, 1996
FriOI	GRGCYC	5 cut(s)	141, 752, 829, 868, 1409
FspBI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2021
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	3 cut(s)	345, 358, 695
GsaI	CCCAGC	2 cut(s)	1283, 1368
GsuI	CTGGAG	1 cut(s)	1503
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	164, 519, 1160, 1293, 2076
HapII	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	3 cut(s)	346, 359, 696
Hin1I	GRCGYC	2 cut(s)	213, 357
Hin6I	GCGC	3 cut(s)	344, 357, 694
HinP1I	GCGC	3 cut(s)	344, 357, 694
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	1725
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
HphI	GGTGA	4 cut(s)	434, 1040, 1380, 2248
Hpy166II	GTNNAC	4 cut(s)	220, 1134, 1327, 1705
Hpy188III	TCNNGA	7 cut(s)	557, 668, 789, 1482, 1670, 1851, 2032
Hpy8I	GTNNAC	4 cut(s)	220, 1134, 1327, 1705
Hpy99I	CGWCG	2 cut(s)	200, 215
HpyCH4III	ACNGT	7 cut(s)	77, 175, 786, 986, 1331, 1764, 1907
HpyCH4IV	ACGT	1 cut(s)	14
HpyF3I	CTNAG	5 cut(s)	245, 317, 657, 810, 1303
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	2 cut(s)	213, 357
HspAI	GCGC	3 cut(s)	344, 357, 694
KasI	GGCGCC	1 cut(s)	356
KspAI	GTTAAC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	302
Kzo9I	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
LguI	GCTCTTC	1 cut(s)	856
LmnI	GCTCC	8 cut(s)	136, 241, 832, 871, 1404, 1484, 1777, 1964
LweI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1670, 2018
MabI	ACCWGGT	1 cut(s)	1885
MaeI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2021
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	4 cut(s)	4, 429, 1386, 1907
MalI	GATC	6 cut(s)	49, 255, 807, 945, 1056, 1630
MboI	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
MflI	RGATCY	2 cut(s)	805, 943
MhlI	GDGCHC	7 cut(s)	141, 752, 829, 868, 1409, 1585, 1774
MlsI	TGGCCA	1 cut(s)	1160
MluNI	TGGCCA	1 cut(s)	1160
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	944, 1472
MmeI	TCCRAC	3 cut(s)	358, 832, 1861
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	3 cut(s)	619, 666, 996
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
MslI	CAYNNNNRTG	2 cut(s)	759, 1700
Msp20I	TGGCCA	1 cut(s)	1160
MspA1I	CMGCKG	4 cut(s)	301, 316, 349, 1532
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	7 cut(s)	257, 360, 449, 510, 610, 838, 1575
MspR9I	CCNGG	4 cut(s)	510, 511, 838, 1887
Mva1269I	GAATGC	2 cut(s)	619, 1117
MvaI	CCWGG	1 cut(s)	1887
MvnI	CGCG	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	357
NciI	CCSGG	3 cut(s)	510, 511, 838
NdeII	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
NheI	GCTAGC	2 cut(s)	605, 1216
NmeAIII	GCCGAG	2 cut(s)	571, 1319
NmuCI	GTSAC	3 cut(s)	429, 1386, 1907
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	3 cut(s)	619, 666, 996
NspI	RCATGY	1 cut(s)	1699
NspV	TTCGAA	1 cut(s)	20
PagI	TCATGA	1 cut(s)	1669
PciSI	GCTCTTC	1 cut(s)	856
PctI	GAATGC	2 cut(s)	619, 1117
PfeI	GAWTC	8 cut(s)	97, 550, 841, 1003, 1021, 1097, 1801, 2227
PflMI	CCANNNNNTGG	2 cut(s)	851, 1829
PleI	GAGTC	2 cut(s)	943, 1472
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	943, 1472
Ppu21I	YACGTR	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	1268
Psp124BI	GAGCTC	2 cut(s)	141, 868
Psp5II	RGGWCCY	1 cut(s)	1268
Psp6I	CCWGG	1 cut(s)	1885
PspFI	CCCAGC	2 cut(s)	1279, 1364
PspGI	CCWGG	1 cut(s)	1885
PspPI	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1883, 2098
PspPPI	RGGWCCY	1 cut(s)	1268
PstI	CTGCAG	2 cut(s)	943, 1620
PstNI	CAGNNNCTG	2 cut(s)	1532, 1535
PsuI	RGATCY	2 cut(s)	805, 943
PvuII	CAGCTG	1 cut(s)	1532
RseI	CAYNNNNRTG	2 cut(s)	759, 1700
SacI	GAGCTC	2 cut(s)	141, 868
SacII	CCGCGG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	856
SaqAI	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
Sau3AI	GATC	6 cut(s)	47, 253, 805, 943, 1054, 1628
Sau96I	GGNCC	9 cut(s)	163, 321, 517, 1183, 1268, 1511, 1603, 1883, 2098
SchI	GAGTC	2 cut(s)	944, 1472
ScrFI	CCNGG	4 cut(s)	510, 511, 838, 1887
SduI	GDGCHC	7 cut(s)	141, 752, 829, 868, 1409, 1585, 1774
SexAI	ACCWGGT	1 cut(s)	1885
SfaNI	GCATC	9 cut(s)	651, 673, 676, 686, 929, 981, 1581, 1670, 2018
SfcI	CTRYAG	2 cut(s)	939, 1616
SfoI	GGCGCC	1 cut(s)	358
Sfr303I	CCGCGG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	302
SinI	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1883, 2098
SmaI	CCCGGG	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	759, 1700
SmlI	CTYRAG	3 cut(s)	56, 583, 1261
SmoI	CTYRAG	3 cut(s)	56, 583, 1261
SnaBI	TACGTA	1 cut(s)	15
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2021
SstI	GAGCTC	2 cut(s)	141, 868
StyD4I	CCNGG	4 cut(s)	508, 509, 836, 1885
StyI	CCWWGG	2 cut(s)	324, 520
TaaI	ACNGT	7 cut(s)	77, 175, 786, 986, 1331, 1764, 1907
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	20, 210, 1995
TauI	GCSGC	6 cut(s)	304, 313, 316, 357, 464, 467
TfiI	GAWTC	8 cut(s)	97, 550, 841, 1003, 1021, 1097, 1801, 2227
Tru1I	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
Tru9I	TTAA	6 cut(s)	57, 219, 1068, 1227, 1287, 1625
TscAI	CASTG	8 cut(s)	82, 789, 880, 1174, 1206, 1416, 1912, 2098
TseFI	GTSAC	3 cut(s)	429, 1386, 1907
Tsp45I	GTSAC	3 cut(s)	429, 1386, 1907
TspMI	CCCGGG	1 cut(s)	509
TspRI	CASTG	8 cut(s)	82, 789, 880, 1174, 1206, 1416, 1912, 2098
Van91I	CCANNNNNTGG	2 cut(s)	851, 1829
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	7 cut(s)	321, 1183, 1268, 1511, 1603, 1883, 2098
XagI	CCTNNNNNAGG	1 cut(s)	1098
XapI	RAATTY	6 cut(s)	901, 1075, 1336, 1516, 1990, 2067
XceI	RCATGY	1 cut(s)	1699
XmaI	CCCGGG	1 cut(s)	509
XmiI	GTMKAC	2 cut(s)	1133, 1326
XspI	CTAG	6 cut(s)	606, 773, 822, 831, 1217, 2021
Zsp2I	ATGCAT	3 cut(s)	619, 666, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.