Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002776

Physical Location & Seq

Genomic Coordinates Reverse (-)

6234563 .. 6236482

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGCTGCTGAGGGAACAGCGTAGGCAAGACGCCGATGATCGCGAAAGTGAGCTGAATATATATAGAAGCGGATCAGCACCTCCCACTGTGGAGGGTTCTTTGAATGCGGTTGGTGGGTTGTTTGCTGGTGTCGGTGGTGGCAGTGCTGGTGCCGCCTTTTCGGAGTTTCCTGGAGGTAAAAATGGAAATGGGTTTGCGTCCGAAGAGGAGCTTAGGTCTGATCCTGCTTATATTCAATACTATTACTCGAATGTGAACCTGAATCCGCGGCTTCCTCCTCCTTTGCTGTCGAAGGAGGATTGGAGGTCTGCACAAAGGATGAAAGGAGGAGGGAATTCGGTGTTGGGTGGGATAGGAGACAGGAGGAAAGTGAATAGGGTTGATGAGGCTAGCGGTAGATCGATGTTTTCAATGCCGCCAGGTTTCAACTCAAGGAAACAAGAGAGTGACGCCGAGTCGGACAAAGTGCATGGCTCAGCAGAGTGGGGTGTTGATGGACTGATTGGTTTGCCAGGTTTGGGACTTGGTAACAAACAAAAGAGCCTTGCCGAAATCTTTCAGGATGACTTGGGTCGTGCAGCTCCTGTTTCTGGGCATCCTTCTCGTCCAGCAAGCCGTAATGCATTTGATGAAAATGCAGAGTCTGTTGGTTCTGCTGAATCTGATCTAGCTCATTTGCGACGCGACTTGATGACTTCTGATACTCTACGATCAAGTGCAAATGGTCTGGGATCTTCTGCAGCCCAAAGTATGGGCCCACCTTCTTCATACTCGTATGCTGCAGCTCTGGGTGCTTCCTTATCTAGAAGCACCACTCCTGATCCCCAAGTTGTCGCTAGGGCTCCTAGTCCTTGCCTTACACCTATTGGAGGAGGAAGGGTTGGTGCTTCAGAAAAGAGAGGATTTAGTAGTCCAAGCTCCTTCAATGCTATCTCGTCTGGTATGAATGAGTCTGGGGATCTGGTGGGCACGTTTTCCAGCATGAACTTGTCTGCCAATGGTGTAAAAGATAATGAGAGCCATTTGCCATCACAGATTAAGCAAGATGTAGATGATCACCAGAATTATCTCTTTGGTCTTCAAGGTGGCGAGAATCATGCCAGGCAACTAGCATACCTGAAGAAGTCTGAATCTGGGCATATGCACATGTCCTCTGCCCCACACTCAGCAAAAGCTTCATATGCAGATTTGGGTAAGAGCAATGGTGGTGGGCCAGATTCCTCTGATAGGCATGTTGAACTGAAAAAGTCTGCTGTTTCTTCTGGTAACTTATACTCAAAAGGATCGATCCCACATCCAATCTTAATGGCGGAGGTGGCTTGCATCATCAGTATCAGCAAGTGGATCATGCAAACTCATCATTTTCTAACTATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

460

Amino Acids

48.37

Weight (kDa)

6.37

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29140 AT2G29140 AT2G29190 AT2G29190 AT2G29200 AT2G29200
fragaria_vesca	FvH4_3g36870 FvH4_7g22880 FvH4_7g22880
malus_domestica	MD01G1136900.v1.1 MD03G1087000.v1.1 MD07G1201900.v1.1 MD11G1096100.v1.1
prunus_persica	Prupe.2G238500_v2.0.a1 Prupe.2G238500_v2.0.a1 Prupe.6G071600_v2.0.a1
pyrus_communis	pycom01g15770 pycom07g18890 pycom11g08140
rosa_chinensis	RchiOBHm_Chr1g0368031 RchiOBHm_Chr5g0066091
rosa_laevigata	RLG00000027244 RLG00000035840
rosa_multiflora	Rmu_sc0002406.1_g000007 Rmu_sc0011946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014920 Rroxscaffold_4G00288920
rosa_rugosa	Rorug01G0338500 Rorug05G0376200
rosa_samantha	Rh1AG345400 Rh1BG307700 Rh1CG323300 Rh1DG339800 Rh5AG434700 Rh5BG451000 Rh5CG473300 Rh5DG464600
rosa_wichuraiana	Rw1G030740 Rw5G040710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccII	CGCG	3 cut(s)	42, 268, 684
AciI	CCGC	8 cut(s)	69, 107, 153, 266, 268, 393, 416, 1310
AclWI	GGATC	8 cut(s)	79, 215, 739, 815, 966, 1282, 1291, 1352
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	873, 1139
AcyI	GRCGYC	2 cut(s)	30, 450
AfiI	CCNNNNNNNGG	5 cut(s)	518, 590, 751, 869, 1227
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	7 cut(s)	103, 236, 411, 427, 925, 1082, 1238
AhdI	GACNNNNNGTC	1 cut(s)	454
AjnI	CCWGG	4 cut(s)	169, 418, 511, 1100
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	7 cut(s)	52, 211, 581, 671, 785, 918, 1175
AluI	AGCT	7 cut(s)	52, 211, 581, 671, 785, 918, 1175
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	8 cut(s)	79, 215, 739, 815, 966, 1282, 1291, 1352
AlwNI	CAGNNNCTG	2 cut(s)	584, 644
AoxI	GGCC	2 cut(s)	754, 1211
ApaI	GGGCCC	1 cut(s)	758
ApeKI	GCWGC	5 cut(s)	4, 578, 740, 779, 782
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	754, 755, 1211
AsuHPI	GGTGA	1 cut(s)	1049
AsuNHI	GCTAGC	1 cut(s)	389
BaeGI	GKGCMC	2 cut(s)	758, 971
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	758, 844
BbsI	GAAGAC	1 cut(s)	1070
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	590, 752, 766, 794
BccI	CCATC	2 cut(s)	488, 1036
BceAI	ACGGC	1 cut(s)	600
BcgI	CGANNNNNNTGC	4 cut(s)	584, 618, 1079, 1113
BciT130I	CCWGG	4 cut(s)	171, 420, 513, 1102
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	6 cut(s)	390, 668, 804, 837, 846, 1109
BfmI	CTRYAG	2 cut(s)	738, 780
BisI	GCNGC	8 cut(s)	5, 153, 269, 416, 579, 741, 780, 783
BlpI	GCTNAGC	1 cut(s)	475
BlsI	GCNGC	8 cut(s)	6, 154, 270, 417, 580, 742, 781, 784
Bme1390I	CCNGG	4 cut(s)	171, 420, 513, 1102
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmgT120I	GGNCC	3 cut(s)	754, 755, 1211
BmiI	GGNNCC	3 cut(s)	151, 756, 843
BmrFI	CCNGG	4 cut(s)	171, 420, 513, 1102
BmsI	GCATC	2 cut(s)	604, 1332
BmtI	GCTAGC	1 cut(s)	393
BoxI	GACNNNNGTC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	1070
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	2 cut(s)	8, 212
Bpu1102I	GCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	415
Bsa29I	ATCGAT	2 cut(s)	401, 1286
BsaHI	GRCGYC	2 cut(s)	30, 450
BsaJI	CCNNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 864, 894
Bsc4I	CCNNNNNNNGG	5 cut(s)	518, 590, 751, 869, 1227
Bse3DI	GCAATG	1 cut(s)	1207
BseBI	CCWGG	4 cut(s)	171, 420, 513, 1102
BseCI	ATCGAT	2 cut(s)	401, 1286
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	4 cut(s)	324, 568, 595, 1294
BseLI	CCNNNNNNNGG	5 cut(s)	518, 590, 751, 869, 1227
BseMI	GCAATG	1 cut(s)	1207
BseMII	CTCAG	2 cut(s)	489, 1179
BseRI	GAGGAG	4 cut(s)	221, 267, 342, 885
BseSI	GKGCMC	2 cut(s)	758, 971
BseXI	GCAGC	4 cut(s)	590, 752, 766, 794
BsgI	GTGCAG	2 cut(s)	294, 597
Bsh1236I	CGCG	3 cut(s)	42, 268, 684
BshFI	GGCC	2 cut(s)	756, 1213
BshNI	GGYRCC	1 cut(s)	149
BshVI	ATCGAT	2 cut(s)	401, 1286
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	5 cut(s)	518, 590, 751, 869, 1227
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	756, 1213
Bsp120I	GGGCCC	1 cut(s)	754
Bsp1286I	GDGCHC	3 cut(s)	758, 844, 971
Bsp1720I	GCTNAGC	1 cut(s)	475
Bsp68I	TCGCGA	1 cut(s)	42
BspACI	CCGC	8 cut(s)	69, 107, 153, 266, 268, 393, 416, 1310
BspANI	GGCC	2 cut(s)	756, 1213
BspCNI	CTCAG	2 cut(s)	488, 1178
BspDI	ATCGAT	2 cut(s)	401, 1286
BspFNI	CGCG	3 cut(s)	42, 268, 684
BspLI	GGNNCC	3 cut(s)	151, 756, 843
BspMAI	CTGCAG	2 cut(s)	742, 784
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	8 cut(s)	79, 215, 739, 815, 966, 1282, 1291, 1352
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	1207
BssECI	CCNNGG	1 cut(s)	266
BssNI	GRCGYC	2 cut(s)	30, 450
Bst2UI	CCWGG	4 cut(s)	171, 420, 513, 1102
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	2 cut(s)	30, 450
BstC8I	GCNNGC	3 cut(s)	391, 613, 1321
BstDEI	CTNAG	4 cut(s)	8, 212, 475, 1165
BstDSI	CCRYGG	1 cut(s)	266
BstENI	CCTNNNNNAGG	2 cut(s)	867, 1225
BstF5I	GGATG	4 cut(s)	324, 568, 595, 1294
BstFNI	CGCG	3 cut(s)	42, 268, 684
BstMAI	GTCTC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 791, 1181, 1316
BstNI	CCWGG	4 cut(s)	171, 420, 513, 1102
BstNSI	RCATGY	2 cut(s)	1150, 1235
BstPAI	GACNNNNGTC	1 cut(s)	570
BstSCI	CCNGG	4 cut(s)	169, 418, 511, 1100
BstSFI	CTRYAG	2 cut(s)	738, 780
BstSLI	GKGCMC	2 cut(s)	758, 971
BstUI	CGCG	3 cut(s)	42, 268, 684
BstV1I	GCAGC	4 cut(s)	590, 752, 766, 794
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	731, 958
BstYI	RGATCY	2 cut(s)	731, 958
Bsu15I	ATCGAT	2 cut(s)	401, 1286
BsuRI	GGCC	2 cut(s)	756, 1213
BsuTUI	ATCGAT	2 cut(s)	401, 1286
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	324, 568, 595, 1294
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	84, 148
BtuMI	TCGCGA	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	391, 613, 1321
CaiI	CAGNNNCTG	2 cut(s)	584, 644
Cfr13I	GGNCC	3 cut(s)	754, 755, 1211
Cfr42I	CCGCGG	1 cut(s)	269
ClaI	ATCGAT	2 cut(s)	401, 1286
CseI	GACGC	4 cut(s)	38, 186, 458, 690
CspCI	CAANNNNNGTGG	2 cut(s)	1189, 1224
CviAII	CATG	6 cut(s)	470, 982, 1097, 1147, 1232, 1348
DdeI	CTNAG	4 cut(s)	8, 212, 475, 1165
DriI	GACNNNNNGTC	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	1325
Eco24I	GRGCYC	2 cut(s)	758, 844
Eco57I	CTGAAG	2 cut(s)	873, 1139
EcoNI	CCTNNNNNAGG	2 cut(s)	867, 1225
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	4 cut(s)	169, 418, 511, 1100
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	2 cut(s)	758, 844
FaeI	CATG	6 cut(s)	473, 985, 1100, 1150, 1235, 1351
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	6 cut(s)	469, 981, 1096, 1146, 1231, 1347
FauNDI	CATATG	2 cut(s)	1140, 1180
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	8 cut(s)	5, 153, 269, 416, 579, 741, 780, 783
FokI	GGATG	4 cut(s)	331, 575, 582, 1281
FriOI	GRGCYC	2 cut(s)	758, 844
Fsp4HI	GCNGC	8 cut(s)	5, 153, 269, 416, 579, 741, 780, 783
FspBI	CTAG	6 cut(s)	390, 668, 804, 837, 846, 1109
GluI	GCNGC	8 cut(s)	5, 153, 269, 416, 579, 741, 780, 783
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	756, 1213
HgaI	GACGC	4 cut(s)	38, 186, 458, 690
Hin1I	GRCGYC	2 cut(s)	30, 450
Hin1II	CATG	6 cut(s)	473, 985, 1100, 1150, 1235, 1351
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	8 cut(s)	262, 455, 641, 659, 950, 1093, 1130, 1217
HphI	GGTGA	1 cut(s)	1049
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	9 cut(s)	163, 202, 220, 460, 664, 700, 892, 1129, 1225
Hpy188III	TCNNGA	4 cut(s)	41, 560, 804, 818
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	684
HpyAV	CCTTC	5 cut(s)	286, 609, 771, 870, 931
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 791, 1181, 1316
HpyF3I	CTNAG	4 cut(s)	8, 212, 475, 1165
HpySE526I	ACGT	1 cut(s)	971
Hsp92I	GRCGYC	2 cut(s)	30, 450
Hsp92II	CATG	6 cut(s)	473, 985, 1100, 1150, 1235, 1351
Ksp22I	TGATCA	1 cut(s)	1054
KspI	CCGCGG	1 cut(s)	269
LmnI	GCTCC	4 cut(s)	208, 586, 847, 923
Lsp1109I	GCAGC	4 cut(s)	590, 752, 766, 794
LweI	GCATC	2 cut(s)	604, 1332
MaeI	CTAG	6 cut(s)	390, 668, 804, 837, 846, 1109
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	3 cut(s)	446, 527, 1265
MboII	GAAGA	6 cut(s)	215, 726, 756, 1070, 1132, 1251
MflI	RGATCY	2 cut(s)	731, 958
MhlI	GDGCHC	3 cut(s)	758, 844, 971
MluCI	AATT	2 cut(s)	334, 1063
MlyI	GAGTC	3 cut(s)	464, 650, 959
MmeI	TCCRAC	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	3 cut(s)	1038, 1304, 1378
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	4 cut(s)	171, 420, 513, 1102
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	4 cut(s)	171, 420, 513, 1102
MvnI	CGCG	3 cut(s)	42, 268, 684
MwoI	GCNNNNNNNGC	4 cut(s)	152, 791, 1181, 1316
NdeI	CATATG	2 cut(s)	1140, 1180
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	6 cut(s)	473, 985, 1100, 1150, 1235, 1351
NlaIV	GGNNCC	3 cut(s)	151, 756, 843
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	2 cut(s)	1150, 1235
PciI	ACATGT	1 cut(s)	1146
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	5 cut(s)	262, 659, 1093, 1130, 1217
PflMI	CCANNNNNTGG	1 cut(s)	751
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	8 cut(s)	6, 154, 270, 417, 580, 742, 781, 784
PleI	GAGTC	3 cut(s)	463, 649, 958
PpsI	GAGTC	3 cut(s)	463, 649, 958
PscI	ACATGT	1 cut(s)	1146
PshAI	GACNNNNGTC	1 cut(s)	570
Psp6I	CCWGG	4 cut(s)	169, 418, 511, 1100
PspGI	CCWGG	4 cut(s)	169, 418, 511, 1100
PspN4I	GGNNCC	3 cut(s)	151, 756, 843
PspOMI	GGGCCC	1 cut(s)	754
PspPI	GGNCC	3 cut(s)	754, 755, 1211
PstI	CTGCAG	2 cut(s)	742, 784
PstNI	CAGNNNCTG	2 cut(s)	584, 644
PsuI	RGATCY	2 cut(s)	731, 958
RruI	TCGCGA	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	1038, 1304, 1378
SatI	GCNGC	8 cut(s)	5, 153, 269, 416, 579, 741, 780, 783
Sau96I	GGNCC	3 cut(s)	754, 755, 1211
SchI	GAGTC	3 cut(s)	464, 650, 959
ScrFI	CCNGG	4 cut(s)	171, 420, 513, 1102
SduI	GDGCHC	3 cut(s)	758, 844, 971
SfaNI	GCATC	2 cut(s)	604, 1332
SfcI	CTRYAG	2 cut(s)	738, 780
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	2 cut(s)	334, 1063
SsiI	CCGC	8 cut(s)	69, 107, 153, 266, 268, 393, 416, 1310
SspMI	CTAG	6 cut(s)	390, 668, 804, 837, 846, 1109
StyD4I	CCNGG	4 cut(s)	169, 418, 511, 1100
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	4 cut(s)	248, 290, 401, 1286
TasI	AATT	2 cut(s)	334, 1063
TauI	GCSGC	3 cut(s)	155, 271, 418
TfiI	GAWTC	5 cut(s)	262, 659, 1093, 1130, 1217
Tru1I	TTAA	3 cut(s)	1038, 1304, 1378
Tru9I	TTAA	3 cut(s)	1038, 1304, 1378
TscAI	CASTG	2 cut(s)	91, 148
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	5 cut(s)	4, 578, 740, 779, 782
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	6 cut(s)	335, 645, 756, 959, 998, 1167
TspRI	CASTG	2 cut(s)	91, 148
Van91I	CCANNNNNTGG	1 cut(s)	751
XagI	CCTNNNNNAGG	2 cut(s)	867, 1225
XapI	RAATTY	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	803
XceI	RCATGY	2 cut(s)	1150, 1235
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	6 cut(s)	390, 668, 804, 837, 846, 1109
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.