MD04G1132500.v1.1

Thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0005684
Physical Location & Seq
Reverse (-)
21935479 .. 21936881
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1132500.v1.1.491

Sequence Viewer

Length: 735 bp
ATGCCAACTTCCTCTTTGTTCTTCCCCCTACTCTATCTACTTATCTCGACCTCAATTACAAATGGGGCTCAACTGATTATAGTGAACAACTGCAATGAAAGTATATGGCCCGGTATACTTGGCAGTGCAGGCCTAGCCACTCCTGAAAGTGGCGGTTTCCATCTTGGCAGCGGTGAGGAATCAGTTCTTGATGTGCCTGAGAAGTGGTCAGGAAGGATATGGGGCAGGCAGGGTTGCTCATTTGACAGTAATGGAATAGGCAACTGTGAGACCGGAGATTGTTTTGGCCAATTGCGTTGCCAAGGCAAAGGAGGCGTGCCTCCAGCGACCGTGGTTGAAATGACGCTTGGATCATCAACTTCACCCCTGCATTTCTATGACGTGAGCTTGGTTGACGGCTTTAACTTGCCTGTGTCAATGAAGCCGGTTGGTGGTGGAATAGGGTGTGGTGTTGCCTCATGCGAGGCTGATTTGAACGTTTGCTGCCCGTCTGCATTGGAAGTGAGGAGAGGAGGCAGGGTGGTGGCATGTAAGAGTGCCTGCTTGGCTATGCAGTCTGCGAAGTATTGCTGCACAGGAAGCTACGCAAACCCAAACACTTGCAAACCAACCCTTTTCGCGCATCTGTTTAAGGCCATATGCCCCAAGGCTTATAGTTATGCCTTTGATGACTCCTCCAGCCTTAACAAATGCAGGGCTTCGCGGTATGTCATCACTTTCTGCCCTCCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

245

Amino Acids

25.67

Weight (kDa)

6.77

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 242 2.1e-81 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AccII CGCG 2 cut(s) 620, 703
AciI CCGC 3 cut(s) 153, 171, 703
AclI AACGTT 1 cut(s) 477
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 149, 431
AgsI TTSAA 2 cut(s) 338, 475
AjiI CACGTC 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 2 cut(s) 387, 582
AluI AGCT 2 cut(s) 387, 582
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 358
AoxI GGCC 4 cut(s) 107, 130, 286, 633
ApeKI GCWGC 3 cut(s) 168, 483, 570
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 185, 354
BalI TGGCCA 1 cut(s) 288
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 180, 470, 557
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 412
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 3 cut(s) 169, 484, 571
BlsI GCNGC 3 cut(s) 170, 485, 572
Bme1390I CCNGG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 631
BpmI CTGGAG 2 cut(s) 306, 661
BpuMI CCSGG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 301, 330, 645
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 431
Bse118I RCCGGY 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 301, 330, 645
BseLI CCNNNNNNNGG 2 cut(s) 149, 431
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 3 cut(s) 520, 525, 664
BseXI GCAGC 3 cut(s) 180, 470, 557
BsgI GTGCAG 2 cut(s) 147, 556
Bsh1236I CGCG 2 cut(s) 620, 703
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 4 cut(s) 109, 132, 288, 635
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 111, 273, 425
BslI CCNNNNNNNGG 2 cut(s) 149, 431
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 4 cut(s) 109, 132, 288, 635
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 3 cut(s) 153, 171, 703
BspANI GGCC 4 cut(s) 109, 132, 288, 635
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 2 cut(s) 620, 703
BspPI GGATC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 301, 330, 645
BssMI GATC 1 cut(s) 350
BssNAI GTATAC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 301, 645
Bst1107I GTATAC 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 248, 266, 331
BstC8I GCNNGC 4 cut(s) 130, 227, 317, 541
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 620, 703
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 350
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 129, 134, 312, 545, 579
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 2 cut(s) 620, 703
BstV1I GCAGC 3 cut(s) 180, 470, 557
BstZ17I GTATAC 1 cut(s) 116
BsuRI GGCC 4 cut(s) 109, 132, 288, 635
BtgI CCRYGG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 130, 227, 317, 541
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 352
CviAII CATG 2 cut(s) 459, 528
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 301, 645
Eco147I AGGCCT 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 301, 645
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 301, 645
FaeI CATG 2 cut(s) 462, 531
FatI CATG 2 cut(s) 458, 527
FauNDI CATATG 1 cut(s) 638
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 169, 484, 571
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 169, 484, 571
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 621
GluI GCNGC 3 cut(s) 169, 484, 571
GsuI CTGGAG 2 cut(s) 306, 661
HaeIII GGCC 4 cut(s) 109, 132, 288, 635
HapII CCGG 3 cut(s) 111, 273, 425
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 622
Hin1II CATG 2 cut(s) 462, 531
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 179, 671
HpaII CCGG 3 cut(s) 111, 273, 425
HphI GGTGA 2 cut(s) 185, 354
Hpy166II GTNNAC 3 cut(s) 85, 116, 394
Hpy188III TCNNGA 4 cut(s) 46, 143, 188, 210
Hpy8I GTNNAC 3 cut(s) 85, 116, 394
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 248, 266, 331
HpyCH4IV ACGT 2 cut(s) 381, 477
HpyCH4V TGCA 8 cut(s) 93, 128, 370, 494, 553, 573, 603, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 134, 312, 545, 579
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 381, 477
Hsp92II CATG 2 cut(s) 462, 531
HspAI GCGC 1 cut(s) 620
Kzo9I GATC 1 cut(s) 350
Lsp1109I GCAGC 3 cut(s) 180, 470, 557
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 381, 477
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 1 cut(s) 13
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 2 cut(s) 54, 290
MluNI TGGCCA 1 cut(s) 288
MlyI GAGTC 1 cut(s) 665
Mox20I TGGCCA 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 288
MseI TTAA 3 cut(s) 402, 630, 684
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 3 cut(s) 111, 273, 425
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 290
MvnI CGCG 2 cut(s) 620, 703
MwoI GCNNNNNNNGC 5 cut(s) 129, 134, 312, 545, 579
NciI CCSGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 638
NdeII GATC 1 cut(s) 350
NlaIII CATG 2 cut(s) 462, 531
NspI RCATGY 1 cut(s) 531
PceI AGGCCT 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 170, 485, 572
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 477
PspPI GGNCC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 3 cut(s) 402, 630, 684
SatI GCNGC 3 cut(s) 169, 484, 571
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 70
SetI ASST 5 cut(s) 53, 384, 389, 480, 584
SfaNI GCATC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 2 cut(s) 54, 290
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 3 cut(s) 153, 171, 703
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 2 cut(s) 301, 645
TaaI ACNGT 3 cut(s) 248, 266, 331
TaiI ACGT 2 cut(s) 384, 480
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 54, 290
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 402, 630, 684
Tru9I TTAA 3 cut(s) 402, 630, 684
TscAI CASTG 1 cut(s) 130
TseI GCWGC 3 cut(s) 168, 483, 570
TspDTI ATGAA 2 cut(s) 111, 434
TspRI CASTG 1 cut(s) 130
XceI RCATGY 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.