Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005684

Physical Location & Seq

Genomic Coordinates Reverse (-)

25042942 .. 25044308

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCAACTTCCTCTTTTCTCTTCCCCCTACTCTTCCTTTTAGCCCCAATCTCAATTACAAATGGGGCTCAACTCATTCTAGTAAACAACTGCAATGAAAGTATATGGCCTGGTATACTTGGCACAGCAGGCCTAGCCACTCCTCAAAGTGGCGGTTTCCACCTCGGCAGTGGCCAAGAACTAGTTCTTGATGTGCCTGAGAAGTGGTCAGGAAGGATATGGGGCAGGCAGGGCTGTCAATTTGACAATGATGGAAAAGGCAATTGTGAGACCGGCGATTGTTTTGGCCAATTGCATTGTCAGGGGAAAGGGGGTGTACCTCCAGCAACCGTTGTTGAAATGACACTCGGATCATCAACTTCACCCCTGCATTTCTATGATGTGAGCTTGGTTGATGGATTTAATCTGCCTGTGTCAATGAAACCGGTCGGTGGTGGAATAGGCTGTGGTGTTGCCTCATGTGAGGTTGATTTGAACGTTTGCTGCCCATCAGCATTGGAAGTGAGGAGAGGAGGCAGGGTTGTGGGGTGTAAAAGTGCCTGCTTGGCTATGCAATCTGCTAAGTATTGCTGCACAGGAAGCTATGCAAATCCAAACACTTGCAAGCCAACCCTTTTTGCGCATCTGTTTAAGGCCATATGTCCCAAGGCCTATAGCTATGCTTTTGATGACTCTTCCAGCCTTAACAAATGCAGGGCTTCGCGGTACGTCATCACTTTCTGCCCTGCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

245

Amino Acids

25.72

Weight (kDa)

7.39

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02140 AT5G02140
fragaria_vesca	FvH4_6g13270 FvH4_7g22890
malus_domestica	MD04G1132500.v1.1 MD07G1202000.v1.1 MD12G1145300.v1.1
prunus_persica	Prupe.2G238600_v2.0.a1 Prupe.6G259000_v2.0.a1
pyrus_communis	pycom04g12040 pycom12g13970
rosa_chinensis	RchiOBHm_Chr1g0368041 RchiOBHm_Chr3g0466091
rosa_laevigata	RLG00000024603 RLG00000027243
rosa_multiflora	Rmu_sc0009459.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414800
rosa_rugosa	Rorug01G0338500 Rorug03G0079600
rosa_samantha	Rh1AG345500 Rh1BG307800 Rh1CG323400 Rh1DG339900 Rh3BG146800 Rh3CG147600 Rh3DG147700
rosa_wichuraiana	Rw1G030750 Rw3G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	703
AciI	CCGC	2 cut(s)	153, 703
AclI	AACGTT	1 cut(s)	477
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	2 cut(s)	172, 286
AfaI	GTAC	2 cut(s)	318, 707
AfiI	CCNNNNNNNGG	2 cut(s)	149, 431
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	338, 475
AhlI	ACTAGT	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	3 cut(s)	387, 582, 657
AluI	AGCT	3 cut(s)	387, 582, 657
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	6 cut(s)	107, 130, 172, 286, 633, 648
ApeKI	GCWGC	2 cut(s)	483, 570
AsiGI	ACCGGT	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	354
BalI	TGGCCA	2 cut(s)	174, 288
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	470, 557
BccI	CCATC	3 cut(s)	245, 389, 496
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	3 cut(s)	80, 134, 182
BfmI	CTRYAG	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	2 cut(s)	484, 571
BlsI	GCNGC	2 cut(s)	485, 572
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	163, 645
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 431
Bse118I	RCCGGY	2 cut(s)	272, 424
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	163, 645
BseLI	CCNNNNNNNGG	2 cut(s)	149, 431
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	3 cut(s)	132, 520, 525
BseXI	GCAGC	2 cut(s)	470, 557
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	703
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	6 cut(s)	109, 132, 174, 288, 635, 650
BshTI	ACCGGT	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	273, 425
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	149, 431
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	6 cut(s)	109, 132, 174, 288, 635, 650
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	2 cut(s)	153, 703
BspANI	GGCC	6 cut(s)	109, 132, 174, 288, 635, 650
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	272, 424
BssAI	RCCGGY	2 cut(s)	272, 424
BssECI	CCNNGG	2 cut(s)	163, 645
BssMI	GATC	1 cut(s)	350
BssNAI	GTATAC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	645
Bst1107I	GTATAC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	3 cut(s)	26, 38, 679
BstC8I	GCNNGC	4 cut(s)	130, 227, 541, 605
BstDEI	CTNAG	2 cut(s)	198, 561
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	350
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 134, 231, 545, 579
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	652
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	470, 557
BstZ17I	GTATAC	1 cut(s)	116
BsuRI	GGCC	6 cut(s)	109, 132, 174, 288, 635, 650
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	4 cut(s)	130, 227, 541, 605
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	2 cut(s)	272, 424
Csp6I	GTAC	2 cut(s)	317, 706
CspAI	ACCGGT	1 cut(s)	424
CviAII	CATG	1 cut(s)	459
CviQI	GTAC	2 cut(s)	317, 706
DdeI	CTNAG	2 cut(s)	198, 561
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
EaeI	YGGCCR	2 cut(s)	172, 286
Eam1104I	CTCTTC	3 cut(s)	26, 38, 679
EarI	CTCTTC	3 cut(s)	26, 38, 679
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	2 cut(s)	132, 650
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	1 cut(s)	462
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	638
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	484, 571
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	484, 571
FspBI	CTAG	3 cut(s)	80, 134, 182
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	2 cut(s)	484, 571
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	6 cut(s)	109, 132, 174, 288, 635, 650
HapII	CCGG	2 cut(s)	273, 425
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	2 cut(s)	273, 425
HphI	GGTGA	1 cut(s)	354
Hpy166II	GTNNAC	3 cut(s)	85, 116, 317
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	2 cut(s)	188, 210
Hpy8I	GTNNAC	3 cut(s)	85, 116, 317
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	477, 708
HpyCH4V	TGCA	8 cut(s)	93, 295, 370, 553, 573, 587, 603, 693
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 134, 231, 545, 579
HpyF3I	CTNAG	2 cut(s)	198, 561
HpySE526I	ACGT	2 cut(s)	477, 708
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	1 cut(s)	620
Kzo9I	GATC	1 cut(s)	350
Lsp1109I	GCAGC	2 cut(s)	470, 557
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	3 cut(s)	80, 134, 182
MaeII	ACGT	2 cut(s)	477, 708
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	3 cut(s)	13, 25, 666
MfeI	CAATTG	2 cut(s)	262, 290
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	2 cut(s)	174, 288
MluCI	AATT	4 cut(s)	54, 239, 262, 290
MluNI	TGGCCA	2 cut(s)	174, 288
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	9 cut(s)	22, 153, 173, 330, 457, 466, 498, 503, 506
Mox20I	TGGCCA	2 cut(s)	174, 288
MroXI	GAANNNNTTC	1 cut(s)	183
MscI	TGGCCA	2 cut(s)	174, 288
MseI	TTAA	3 cut(s)	402, 630, 684
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	2 cut(s)	174, 288
MspI	CCGG	2 cut(s)	273, 425
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	2 cut(s)	262, 290
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	5 cut(s)	129, 134, 231, 545, 579
NdeI	CATATG	1 cut(s)	638
NdeII	GATC	1 cut(s)	350
NlaIII	CATG	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	144
NsbI	TGCGCA	1 cut(s)	621
PceI	AGGCCT	2 cut(s)	132, 650
PdmI	GAANNNNTTC	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	485, 572
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp1406I	AACGTT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	318, 707
RsaNI	GTAC	2 cut(s)	317, 706
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	402, 630, 684
SatI	GCNGC	2 cut(s)	484, 571
Sau3AI	GATC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	165, 322, 389, 468, 480, 584, 659, 711
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	375
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	4 cut(s)	54, 239, 262, 290
SseBI	AGGCCT	2 cut(s)	132, 650
SsiI	CCGC	2 cut(s)	153, 703
SspMI	CTAG	3 cut(s)	80, 134, 182
StuI	AGGCCT	2 cut(s)	132, 650
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	2 cut(s)	480, 711
TasI	AATT	4 cut(s)	54, 239, 262, 290
Tru1I	TTAA	3 cut(s)	402, 630, 684
Tru9I	TTAA	3 cut(s)	402, 630, 684
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	483, 570
TspDTI	ATGAA	2 cut(s)	111, 434
TspRI	CASTG	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	3 cut(s)	80, 134, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.