RchiOBHm_Chr1g0368041

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005684
Physical Location & Seq
Reverse (-)
58280578 .. 58281676
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59241

Sequence Viewer

Length: 732 bp
ATGCCAATCTCACTAGTCCTCTGTTTCCTCATCTCCCTCTCCTTCACTGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGAGAGCATATGGCCCGGGATCCTGGGCACTGCCGGCCACCTGACTCCTCAAGACGGCGGCTTCCATCTCCCCAGCGGCCAGCAACTCCTCCTTGACGTCCCTGAGAACTGGTCCGGAAGAATTTGGGGGCGGCAAGGCTGCTGCTTTGATCCAAGCACTGGCAAGGGCTCGTGCCTAACCGGTAGTTGCGCTGGGCTCCTACAATGTAGGGGACTCGGTGGAGTCCCCCCTGCCACACTCGTCGAAATGACACTCGGAACTCCTAAATCCGCCTTGCATTTCTACGATGTGAGCTTGGTTGATGGTTTCAACGTTCCCATTTCCATGGTGCCGATTGGTGGTGGTGTTGGATGTGGTGTTGCTGCTTGTGAGACTGACTTGAATGTATGCTGTCCCCTTGCCTTGGTGGTCAAGAAACAAGGTCGGGTTGTGGGTTGTAAGAGTGCTTGTTTGGCTGCAAAGACAGATAGGTATTGCTGTACTGGGGAGTTTGCAGATCCAGAGAGTTGTAAGCCTAGTGTTTTTGGGCATCTTTTTAAGGCTATTTGTCCCAAGGCTTATAGTTATGCCTTTGATGATTCTACAGGGCTCAAGACCTGTGTGGCTCCTAGGTATGTCATCACATTTTGTCCCCCTAACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

243

Amino Acids

25.48

Weight (kDa)

6.83

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 25 - 239 1.8e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 4 cut(s) 141, 159, 214, 354
AclI AACGTT 1 cut(s) 396
AclWI GGATC 4 cut(s) 97, 110, 227, 575
AcoI YGGCCR 2 cut(s) 118, 160
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 6 cut(s) 137, 242, 422, 487, 724, 725
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 394, 466
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 97, 110, 227, 575
Ama87I CYCGRG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 3 cut(s) 95, 118, 160
ApeKI GCWGC 4 cut(s) 222, 225, 446, 539
ApoI RAATTY 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 263
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 96, 195
AsuC2I CCSGG 2 cut(s) 99, 100
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 195
AvrII CCTAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 113
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 3 cut(s) 254, 282, 675
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 4 cut(s) 209, 212, 433, 526
BccI CCATC 3 cut(s) 44, 156, 380
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 99, 100
BcoDI GTCTC 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 600, 693
BfmI CTRYAG 1 cut(s) 666
BisI GCNGC 7 cut(s) 142, 160, 215, 223, 226, 447, 540
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 7 cut(s) 143, 161, 216, 224, 227, 448, 541
Bme1390I CCNGG 3 cut(s) 99, 100, 107
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 96, 195
BmiI GGNNCC 4 cut(s) 104, 281, 414, 690
BmrFI CCNGG 3 cut(s) 99, 100, 107
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 117, 659
BpuMI CCSGG 2 cut(s) 99, 100
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 6 cut(s) 98, 106, 408, 486, 636, 692
BsaWI WCCGGW 2 cut(s) 197, 263
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 242, 422, 487, 724, 725
Bse118I RCCGGY 2 cut(s) 116, 263
Bse1I ACTGG 3 cut(s) 197, 247, 571
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 6 cut(s) 98, 106, 408, 486, 636, 692
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 6 cut(s) 137, 242, 422, 487, 724, 725
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 3 cut(s) 197, 247, 571
BseRI GAGGAG 2 cut(s) 120, 161
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 4 cut(s) 209, 212, 433, 526
BseYI CCCAGC 2 cut(s) 155, 275
BshFI GGCC 3 cut(s) 97, 120, 162
BshNI GGYRCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 4 cut(s) 99, 117, 198, 264
BslFI GGGAC 7 cut(s) 67, 167, 293, 309, 462, 618, 699
BslI CCNNNNNNNGG 6 cut(s) 137, 242, 422, 487, 724, 725
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 7 cut(s) 67, 167, 293, 309, 462, 618, 699
BsnI GGCC 3 cut(s) 97, 120, 162
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 4 cut(s) 113, 254, 282, 675
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 3 cut(s) 102, 232, 580
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 4 cut(s) 141, 159, 214, 354
BspANI GGCC 3 cut(s) 97, 120, 162
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 197
BspLI GGNNCC 4 cut(s) 104, 281, 414, 690
BspPI GGATC 4 cut(s) 97, 110, 227, 575
BspT107I GGYRCC 1 cut(s) 412
BsrFI RCCGGY 2 cut(s) 116, 263
BsrI ACTGG 3 cut(s) 197, 247, 571
BssAI RCCGGY 2 cut(s) 116, 263
BssECI CCNNGG 6 cut(s) 98, 106, 408, 486, 636, 692
BssMI GATC 3 cut(s) 102, 232, 580
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 253
BssT1I CCWWGG 4 cut(s) 408, 486, 636, 692
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 118, 164
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 105, 235, 583
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 102, 232, 580
BstMWI GCNNNNNNNGC 3 cut(s) 87, 117, 536
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 97, 98, 105
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 209, 212, 433, 526
BstX2I RGATCY 2 cut(s) 102, 580
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 2 cut(s) 102, 580
BsuRI GGCC 3 cut(s) 97, 120, 162
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 45, 111, 240
Cac8I GCNNGC 2 cut(s) 118, 164
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 2 cut(s) 116, 263
Cfr13I GGNCC 2 cut(s) 96, 195
Cfr9I CCCGGG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 564
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 1 cut(s) 409
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 104, 234, 582
DpnII GATC 3 cut(s) 102, 232, 580
EaeI YGGCCR 2 cut(s) 118, 160
EciI GGCGGA 1 cut(s) 343
Eco130I CCWWGG 4 cut(s) 408, 486, 636, 692
Eco24I GRGCYC 3 cut(s) 254, 282, 675
Eco47I GGWCC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 4 cut(s) 408, 486, 636, 692
EcoT38I GRGCYC 3 cut(s) 254, 282, 675
ErhI CCWWGG 4 cut(s) 408, 486, 636, 692
FaeI CATG 1 cut(s) 412
FaiI YATR 8 cut(s) 68, 92, 94, 410, 472, 645, 651, 699
FaqI GGGAC 7 cut(s) 67, 167, 293, 309, 462, 618, 699
FatI CATG 1 cut(s) 408
FauNDI CATATG 1 cut(s) 92
Fnu4HI GCNGC 7 cut(s) 142, 160, 215, 223, 226, 447, 540
FokI GGATG 1 cut(s) 447
FriOI GRGCYC 3 cut(s) 254, 282, 675
Fsp4HI GCNGC 7 cut(s) 142, 160, 215, 223, 226, 447, 540
FspBI CTAG 3 cut(s) 14, 600, 693
GlaI GCGC 1 cut(s) 274
GluI GCNGC 7 cut(s) 142, 160, 215, 223, 226, 447, 540
GsaI CCCAGC 2 cut(s) 159, 279
HaeIII GGCC 3 cut(s) 97, 120, 162
HapII CCGG 4 cut(s) 99, 117, 198, 264
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 5 cut(s) 55, 127, 297, 306, 662
HpaII CCGG 4 cut(s) 99, 117, 198, 264
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 5 cut(s) 134, 198, 496, 584, 676
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 180, 396
HpyCH4V TGCA 4 cut(s) 81, 361, 542, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 117, 536
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 2 cut(s) 180, 396
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 197
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 102, 232, 580
LmnI GCTCC 2 cut(s) 285, 694
Lsp1109I GCAGC 4 cut(s) 209, 212, 433, 526
LweI GCATC 1 cut(s) 622
MaeI CTAG 3 cut(s) 14, 600, 693
MaeII ACGT 2 cut(s) 180, 396
MalI GATC 3 cut(s) 104, 234, 582
MboI GATC 3 cut(s) 102, 232, 580
MboII GAAGA 1 cut(s) 213
MflI RGATCY 2 cut(s) 102, 580
MhlI GDGCHC 4 cut(s) 113, 254, 282, 675
MluCI AATT 1 cut(s) 204
MlyI GAGTC 4 cut(s) 49, 121, 291, 315
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 5 cut(s) 29, 38, 47, 141, 182
MroI TCCGGA 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 68, 407
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 4 cut(s) 99, 117, 198, 264
MspR9I CCNGG 3 cut(s) 99, 100, 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 87, 117, 536
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 2 cut(s) 99, 100
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 92
NdeII GATC 3 cut(s) 102, 232, 580
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 4 cut(s) 104, 281, 414, 690
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 7 cut(s) 143, 161, 216, 224, 227, 448, 541
PleI GAGTC 4 cut(s) 49, 121, 291, 314
PpsI GAGTC 4 cut(s) 49, 121, 291, 314
Psp1406I AACGTT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 105
PspFI CCCAGC 2 cut(s) 155, 275
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 104, 281, 414, 690
PspPI GGNCC 2 cut(s) 96, 195
PsuI RGATCY 2 cut(s) 102, 580
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 2 cut(s) 68, 407
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 7 cut(s) 142, 160, 215, 223, 226, 447, 540
Sau3AI GATC 3 cut(s) 102, 232, 580
Sau96I GGNCC 2 cut(s) 96, 195
SchI GAGTC 4 cut(s) 49, 121, 291, 315
ScrFI CCNGG 3 cut(s) 99, 100, 107
SduI GDGCHC 4 cut(s) 113, 254, 282, 675
SetI ASST 8 cut(s) 126, 183, 380, 399, 508, 557, 683, 698
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 195
SmaI CCCGGG 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 68, 407
SmlI CTYRAG 2 cut(s) 132, 674
SmoI CTYRAG 2 cut(s) 132, 674
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 1 cut(s) 204
SsiI CCGC 4 cut(s) 141, 159, 214, 354
SspMI CTAG 3 cut(s) 14, 600, 693
StyD4I CCNGG 3 cut(s) 97, 98, 105
StyI CCWWGG 4 cut(s) 408, 486, 636, 692
TaiI ACGT 2 cut(s) 183, 399
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 204
TatI WGTACW 1 cut(s) 563
TauI GCSGC 3 cut(s) 144, 162, 217
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 3 cut(s) 52, 118, 247
TseI GCWGC 4 cut(s) 222, 225, 446, 539
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 3 cut(s) 52, 118, 247
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 204
XmaI CCCGGG 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 3 cut(s) 14, 600, 693
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.