Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009459.1

Orthogroup ID

OG0005684

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 835

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 695 bp

atgccaatctcactagtcctctgtttcctcatctccctctccttcactgatgggactcaactcatcatagtgaacaactgcaaggagagcatatggcccgggatcctgggcactgccggccacctgactcctcaagacggcggcttccatctccccagcggccagcaactcctccttgacgtccctgagaactggtccggaagaatttgggggaggcaaggctgctgctttgatccaagcactggcaagggctcgtgcctaaccggtggttgcgctgggctcctacaatgtaggggactcggtggagtcccccctgccacactcgtcgaaatgacactcggaactcctaaatccgccttgcatttctacgatgtgagcttggttgatggtttcaacgttcccatttccatggtgccgattggtggtggtgttggatgtggtgttgctgcttgtgagactgacttgaatgtatgctgtccccttgccttggtggtcaagaaacaaggtcgggttgtgggttgtaagagtgcttgtttggctgcaaagacagataggtattgctgtactggggagtttgcagatccaaagagttgtaagcctagtgtttttgggcatctttttaaggctatttgtcccaaggcttatagttatgcctttgatgattctacagggctcaagacctgtgtggctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

231

Amino Acids

24.08

Weight (kDa)

7.38

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02140 AT5G02140
fragaria_vesca	FvH4_6g13270 FvH4_7g22890
malus_domestica	MD04G1132500.v1.1 MD07G1202000.v1.1 MD12G1145300.v1.1
prunus_persica	Prupe.2G238600_v2.0.a1 Prupe.6G259000_v2.0.a1
pyrus_communis	pycom04g12040 pycom12g13970
rosa_chinensis	RchiOBHm_Chr1g0368041 RchiOBHm_Chr3g0466091
rosa_laevigata	RLG00000024603 RLG00000027243
rosa_multiflora	Rmu_sc0009459.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414800
rosa_rugosa	Rorug01G0338500 Rorug03G0079600
rosa_samantha	Rh1AG345500 Rh1BG307800 Rh1CG323400 Rh1DG339900 Rh3BG146800 Rh3CG147600 Rh3DG147700
rosa_wichuraiana	Rw1G030750 Rw3G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	3 cut(s)	141, 159, 354
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	4 cut(s)	97, 110, 227, 575
AcoI	YGGCCR	2 cut(s)	118, 160
AcsI	RAATTY	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	4 cut(s)	137, 242, 422, 487
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	394, 466
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	4 cut(s)	97, 110, 227, 575
Ama87I	CYCGRG	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	3 cut(s)	95, 118, 160
ApeKI	GCWGC	4 cut(s)	222, 225, 446, 539
ApoI	RAATTY	1 cut(s)	204
AsiGI	ACCGGT	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	96, 195
AsuC2I	CCSGG	2 cut(s)	99, 100
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	3 cut(s)	254, 282, 675
BauI	CACGAG	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	209, 212, 433, 526
BccI	CCATC	3 cut(s)	44, 156, 380
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	2 cut(s)	99, 100
BcoDI	GTCTC	1 cut(s)	449
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	3 cut(s)	14, 600, 693
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	6 cut(s)	142, 160, 223, 226, 447, 540
BlsI	GCNGC	6 cut(s)	143, 161, 224, 227, 448, 541
Bme1390I	CCNGG	3 cut(s)	99, 100, 107
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	96, 195
BmiI	GGNNCC	4 cut(s)	104, 281, 414, 690
BmrFI	CCNGG	3 cut(s)	99, 100, 107
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	117, 659
BpuMI	CCSGG	2 cut(s)	99, 100
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	5 cut(s)	98, 106, 408, 486, 636
BsaWI	WCCGGW	2 cut(s)	197, 263
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 242, 422, 487
Bse118I	RCCGGY	2 cut(s)	116, 263
Bse1I	ACTGG	3 cut(s)	197, 247, 571
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	5 cut(s)	98, 106, 408, 486, 636
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	4 cut(s)	137, 242, 422, 487
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	3 cut(s)	197, 247, 571
BseRI	GAGGAG	2 cut(s)	120, 161
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	209, 212, 433, 526
BseYI	CCCAGC	2 cut(s)	155, 275
BshFI	GGCC	3 cut(s)	97, 120, 162
BshNI	GGYRCC	1 cut(s)	412
BshTI	ACCGGT	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	99, 117, 198, 264
BslFI	GGGAC	6 cut(s)	67, 167, 293, 309, 462, 618
BslI	CCNNNNNNNGG	4 cut(s)	137, 242, 422, 487
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	6 cut(s)	67, 167, 293, 309, 462, 618
BsnI	GGCC	3 cut(s)	97, 120, 162
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	4 cut(s)	113, 254, 282, 675
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	102, 232, 580
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	3 cut(s)	141, 159, 354
BspANI	GGCC	3 cut(s)	97, 120, 162
BspCNI	CTCAG	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	104, 281, 414, 690
BspPI	GGATC	4 cut(s)	97, 110, 227, 575
BspT107I	GGYRCC	1 cut(s)	412
BsrFI	RCCGGY	2 cut(s)	116, 263
BsrI	ACTGG	3 cut(s)	197, 247, 571
BssAI	RCCGGY	2 cut(s)	116, 263
BssECI	CCNNGG	5 cut(s)	98, 106, 408, 486, 636
BssMI	GATC	3 cut(s)	102, 232, 580
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	3 cut(s)	408, 486, 636
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	118, 164
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	105, 235, 583
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	102, 232, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 117, 536
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	97, 98, 105
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	4 cut(s)	209, 212, 433, 526
BstX2I	RGATCY	2 cut(s)	102, 580
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	2 cut(s)	102, 580
BsuRI	GGCC	3 cut(s)	97, 120, 162
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	45, 111, 240
Cac8I	GCNNGC	2 cut(s)	118, 164
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	116, 263
Cfr13I	GGNCC	2 cut(s)	96, 195
Cfr9I	CCCGGG	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	564
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	104, 234, 582
DpnII	GATC	3 cut(s)	102, 232, 580
EaeI	YGGCCR	2 cut(s)	118, 160
EciI	GGCGGA	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	408, 486, 636
Eco24I	GRGCYC	3 cut(s)	254, 282, 675
Eco47I	GGWCC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	3 cut(s)	408, 486, 636
EcoT38I	GRGCYC	3 cut(s)	254, 282, 675
ErhI	CCWWGG	3 cut(s)	408, 486, 636
FaeI	CATG	1 cut(s)	412
FaiI	YATR	7 cut(s)	68, 92, 94, 410, 472, 645, 651
FaqI	GGGAC	6 cut(s)	67, 167, 293, 309, 462, 618
FatI	CATG	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	92
Fnu4HI	GCNGC	6 cut(s)	142, 160, 223, 226, 447, 540
FokI	GGATG	1 cut(s)	447
FriOI	GRGCYC	3 cut(s)	254, 282, 675
Fsp4HI	GCNGC	6 cut(s)	142, 160, 223, 226, 447, 540
FspBI	CTAG	3 cut(s)	14, 600, 693
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	6 cut(s)	142, 160, 223, 226, 447, 540
GsaI	CCCAGC	2 cut(s)	159, 279
HaeIII	GGCC	3 cut(s)	97, 120, 162
HapII	CCGG	4 cut(s)	99, 117, 198, 264
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	5 cut(s)	55, 127, 297, 306, 662
HpaII	CCGG	4 cut(s)	99, 117, 198, 264
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	4 cut(s)	134, 198, 496, 676
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	180, 396
HpyCH4V	TGCA	4 cut(s)	81, 361, 542, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 117, 536
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	180, 396
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	273
Kpn2I	TCCGGA	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	102, 232, 580
LmnI	GCTCC	2 cut(s)	285, 694
Lsp1109I	GCAGC	4 cut(s)	209, 212, 433, 526
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	14, 600, 693
MaeII	ACGT	2 cut(s)	180, 396
MalI	GATC	3 cut(s)	104, 234, 582
MboI	GATC	3 cut(s)	102, 232, 580
MboII	GAAGA	1 cut(s)	213
MflI	RGATCY	2 cut(s)	102, 580
MhlI	GDGCHC	4 cut(s)	113, 254, 282, 675
MluCI	AATT	1 cut(s)	204
MlyI	GAGTC	4 cut(s)	49, 121, 291, 315
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	29, 38, 47, 141, 182, 207
MroI	TCCGGA	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	116
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	2 cut(s)	68, 407
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	99, 117, 198, 264
MspR9I	CCNGG	3 cut(s)	99, 100, 107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	87, 117, 536
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	2 cut(s)	99, 100
NcoI	CCATGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	92
NdeII	GATC	3 cut(s)	102, 232, 580
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	4 cut(s)	104, 281, 414, 690
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	6 cut(s)	143, 161, 224, 227, 448, 541
PleI	GAGTC	4 cut(s)	49, 121, 291, 314
PpsI	GAGTC	4 cut(s)	49, 121, 291, 314
Psp1406I	AACGTT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	2 cut(s)	155, 275
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	4 cut(s)	104, 281, 414, 690
PspPI	GGNCC	2 cut(s)	96, 195
PsuI	RGATCY	2 cut(s)	102, 580
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
RseI	CAYNNNNRTG	2 cut(s)	68, 407
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	6 cut(s)	142, 160, 223, 226, 447, 540
Sau3AI	GATC	3 cut(s)	102, 232, 580
Sau96I	GGNCC	2 cut(s)	96, 195
SchI	GAGTC	4 cut(s)	49, 121, 291, 315
ScrFI	CCNGG	3 cut(s)	99, 100, 107
SduI	GDGCHC	4 cut(s)	113, 254, 282, 675
SetI	ASST	7 cut(s)	126, 183, 380, 399, 508, 557, 683
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	195
SmaI	CCCGGG	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	68, 407
SmlI	CTYRAG	2 cut(s)	132, 674
SmoI	CTYRAG	2 cut(s)	132, 674
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	141, 159, 354
SspMI	CTAG	3 cut(s)	14, 600, 693
StyD4I	CCNGG	3 cut(s)	97, 98, 105
StyI	CCWWGG	3 cut(s)	408, 486, 636
TaiI	ACGT	2 cut(s)	183, 399
TaqI	TCGA	1 cut(s)	327
TasI	AATT	1 cut(s)	204
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	2 cut(s)	144, 162
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	3 cut(s)	52, 118, 247
TseI	GCWGC	4 cut(s)	222, 225, 446, 539
TspMI	CCCGGG	1 cut(s)	98
TspRI	CASTG	3 cut(s)	52, 118, 247
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	204
XmaI	CCCGGG	1 cut(s)	98
XspI	CTAG	3 cut(s)	14, 600, 693
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.