Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005684

Physical Location & Seq

Genomic Coordinates Reverse (-)

25915719 .. 25916871

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACAATCTCACAAGTCTTCATCTTCCTCTGCTTTCTCATCTCCCTGTCCTTCACAGATGGAACTCAACTCATTATAGTGAACAACTGCAAGGAGAGCATATGGCCCGGGATCCTTGGCACTGCAGGCTACCCAACTCCTCAAAGCGGCGGCTTCCATCTCCACAGCGGGGAACAGCAAGTCCTTGACGTGCCAGAAAACTGGTCAGGAAGACTATGGGGCAGGCAAGGCTGCTGCTTTGATGAACAAACGGGAAAAGGCTCATGCCAAACAGGGGATTGCGCCGGGCTCTTACAATGCAGGGGACTTGGTGGAGTGCCTCCAGCCACACTAGTTGAAATGACACTTGGGACCTCCAAATCAGACTTGCATTACTATGATGTGAGTTTGGTTGATGGGTTCAACGTTCCGGTTTCGATGAGGCCAATAGGTGGTAGGATGGGGTGTGGGGTTGCTGCTTGTGAGGCTGACTTGAATGTTTGCTGCCCATCTACATTGGTGGTGATGAAACAAGGGAAGGTTGTAGGCTGCAAGAGCGCTTGTTTGGCTGCAAATTCAGACAGGTATTGCTGCAGAGGGGTGTTTGCAGATCCAAAGAGTTGCAAGCCAACTGTTTTTGGTCATCTTTTTAAGGCTATTTGTCCCAGGGCTTATAGTTATGCCTTTGATGATTCTACAGGGCTCAAGACTTGTAAAGCTCCTCGCTATGTCATTACATTTTGTCCTCCTAACTATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

247

Amino Acids

26.33

Weight (kDa)

7.79

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02140 AT5G02140
fragaria_vesca	FvH4_6g13270 FvH4_7g22890
malus_domestica	MD04G1132500.v1.1 MD07G1202000.v1.1 MD12G1145300.v1.1
prunus_persica	Prupe.2G238600_v2.0.a1 Prupe.6G259000_v2.0.a1
pyrus_communis	pycom04g12040 pycom12g13970
rosa_chinensis	RchiOBHm_Chr1g0368041 RchiOBHm_Chr3g0466091
rosa_laevigata	RLG00000024603 RLG00000027243
rosa_multiflora	Rmu_sc0009459.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414800
rosa_rugosa	Rorug01G0338500 Rorug03G0079600
rosa_samantha	Rh1AG345500 Rh1BG307800 Rh1CG323400 Rh1DG339900 Rh3BG146800 Rh3CG147600 Rh3DG147700
rosa_wichuraiana	Rw1G030750 Rw3G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	3 cut(s)	147, 150, 168
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	3 cut(s)	106, 119, 584
AcsI	RAATTY	1 cut(s)	553
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	5 cut(s)	146, 169, 274, 431, 734
AgsI	TTSAA	3 cut(s)	338, 403, 475
AhlI	ACTAGT	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	698
AluI	AGCT	1 cut(s)	698
AlwI	GGATC	3 cut(s)	106, 119, 584
Ama87I	CYCGRG	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	2 cut(s)	104, 422
ApeKI	GCWGC	7 cut(s)	231, 234, 455, 483, 528, 548, 570
ApoI	RAATTY	1 cut(s)	553
AspLEI	GCGC	2 cut(s)	284, 539
AspS9I	GGNCC	2 cut(s)	105, 351
AsuC2I	CCSGG	3 cut(s)	108, 109, 286
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	291, 684
BbsI	GAAGAC	2 cut(s)	10, 217
BbvI	GCAGC	7 cut(s)	218, 221, 442, 470, 515, 535, 557
BccI	CCATC	5 cut(s)	53, 165, 389, 433, 496
BciT130I	CCWGG	1 cut(s)	646
BcnI	CCSGG	3 cut(s)	108, 109, 286
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	3 cut(s)	123, 571, 675
BfoI	RGCGCY	1 cut(s)	540
BisI	GCNGC	9 cut(s)	148, 151, 232, 235, 456, 484, 529, 549, 571
BlsI	GCNGC	9 cut(s)	149, 152, 233, 236, 457, 485, 530, 550, 572
Bme1390I	CCNGG	4 cut(s)	108, 109, 286, 646
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	105, 351
BmiI	GGNNCC	2 cut(s)	113, 352
BmrFI	CCNGG	4 cut(s)	108, 109, 286, 646
BpiI	GAAGAC	2 cut(s)	10, 217
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	3 cut(s)	108, 109, 286
BsaJI	CCNNGG	4 cut(s)	107, 115, 644, 645
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 169, 274, 431, 734
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	4 cut(s)	107, 115, 644, 645
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	5 cut(s)	146, 169, 274, 431, 734
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	129, 690
BseXI	GCAGC	7 cut(s)	218, 221, 442, 470, 515, 535, 557
BshFI	GGCC	2 cut(s)	106, 424
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	108, 285, 410
BslFI	GGGAC	3 cut(s)	318, 364, 627
BslI	CCNNNNNNNGG	5 cut(s)	146, 169, 274, 431, 734
BsmFI	GGGAC	3 cut(s)	318, 364, 627
BsnI	GGCC	2 cut(s)	106, 424
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	291, 684
Bsp143I	GATC	2 cut(s)	111, 589
BspACI	CCGC	3 cut(s)	147, 150, 168
BspANI	GGCC	2 cut(s)	106, 424
BspLI	GGNNCC	2 cut(s)	113, 352
BspMAI	CTGCAG	2 cut(s)	127, 575
BspPI	GGATC	3 cut(s)	106, 119, 584
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	107, 115, 644, 645
BssMI	GATC	2 cut(s)	111, 589
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	127, 224, 605
BstF5I	GGATG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	284, 539
BstKTI	GATC	2 cut(s)	114, 592
BstMBI	GATC	2 cut(s)	111, 589
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 126, 228, 464, 534, 545
BstNI	CCWGG	1 cut(s)	646
BstSCI	CCNGG	4 cut(s)	106, 107, 284, 644
BstSFI	CTRYAG	3 cut(s)	123, 571, 675
BstV1I	GCAGC	7 cut(s)	218, 221, 442, 470, 515, 535, 557
BstV2I	GAAGAC	2 cut(s)	10, 217
BstX2I	RGATCY	2 cut(s)	111, 589
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	2 cut(s)	111, 589
BsuRI	GGCC	2 cut(s)	106, 424
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	127, 224, 605
CfoI	GCGC	2 cut(s)	284, 539
Cfr13I	GGNCC	2 cut(s)	105, 351
Cfr9I	CCCGGG	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	1 cut(s)	264
DpnI	GATC	2 cut(s)	113, 591
DpnII	GATC	2 cut(s)	111, 589
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	2 cut(s)	291, 684
Eco47I	GGWCC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	2 cut(s)	291, 684
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	267
FaqI	GGGAC	3 cut(s)	318, 364, 627
FatI	CATG	1 cut(s)	263
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	101
Fnu4HI	GCNGC	9 cut(s)	148, 151, 232, 235, 456, 484, 529, 549, 571
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	2 cut(s)	291, 684
Fsp4HI	GCNGC	9 cut(s)	148, 151, 232, 235, 456, 484, 529, 549, 571
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	283, 538
GluI	GCNGC	9 cut(s)	148, 151, 232, 235, 456, 484, 529, 549, 571
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	106, 424
HapII	CCGG	3 cut(s)	108, 285, 410
HhaI	GCGC	2 cut(s)	284, 539
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	2 cut(s)	282, 537
HinP1I	GCGC	2 cut(s)	282, 537
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	3 cut(s)	108, 285, 410
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	364, 559
Hpy188III	TCNNGA	2 cut(s)	207, 685
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	61, 511
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	189, 405
HpyCH4V	TGCA	9 cut(s)	90, 125, 300, 370, 531, 551, 573, 587, 603
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 126, 228, 464, 534, 545
HpySE526I	ACGT	2 cut(s)	189, 405
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	2 cut(s)	282, 537
Kzo9I	GATC	2 cut(s)	111, 589
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	7 cut(s)	218, 221, 442, 470, 515, 535, 557
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	189, 405
MalI	GATC	2 cut(s)	113, 591
MboI	GATC	2 cut(s)	111, 589
MboII	GAAGA	3 cut(s)	10, 16, 222
MflI	RGATCY	2 cut(s)	111, 589
MhlI	GDGCHC	2 cut(s)	291, 684
MluCI	AATT	1 cut(s)	553
MnlI	CCTC	9 cut(s)	38, 150, 330, 364, 414, 457, 569, 711, 735
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	77, 375
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	3 cut(s)	108, 285, 410
MspR9I	CCNGG	4 cut(s)	108, 109, 286, 646
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	6 cut(s)	96, 126, 228, 464, 534, 545
NciI	CCSGG	3 cut(s)	108, 109, 286
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	2 cut(s)	111, 589
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	113, 352
PasI	CCCWGGG	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	9 cut(s)	149, 152, 233, 236, 457, 485, 530, 550, 572
PpuMI	RGGWCCY	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	113, 352
PspPI	GGNCC	2 cut(s)	105, 351
PspPPI	RGGWCCY	1 cut(s)	351
PstI	CTGCAG	2 cut(s)	127, 575
PsuI	RGATCY	2 cut(s)	111, 589
RseI	CAYNNNNRTG	2 cut(s)	77, 375
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	9 cut(s)	148, 151, 232, 235, 456, 484, 529, 549, 571
Sau3AI	GATC	2 cut(s)	111, 589
Sau96I	GGNCC	2 cut(s)	105, 351
ScrFI	CCNGG	4 cut(s)	108, 109, 286, 646
SduI	GDGCHC	2 cut(s)	291, 684
SetI	ASST	7 cut(s)	192, 356, 408, 433, 522, 566, 700
SfcI	CTRYAG	3 cut(s)	123, 571, 675
SinI	GGWCC	1 cut(s)	351
SmaI	CCCGGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	77, 375
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	147, 150, 168
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	106, 107, 284, 644
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	192, 408
TaqI	TCGA	1 cut(s)	416
TasI	AATT	1 cut(s)	553
TauI	GCSGC	2 cut(s)	150, 153
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	7 cut(s)	231, 234, 455, 483, 528, 548, 570
TspDTI	ATGAA	3 cut(s)	10, 258, 521
TspMI	CCCGGG	1 cut(s)	107
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	553
XmaI	CCCGGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.