Rh1AG345500

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005684
Physical Location & Seq
Reverse (-)
58153620 .. 58154783
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG345500.1

Sequence Viewer

Length: 741 bp
ATGCCAATCTCACTAGTCCTCTGTTTCCTCTGTTTCCTCATCTCCCTCTCCTTCACTGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGAGAGCATATGGCCCGGGATCCTGGGCACTGCCGGCCACCTGACTCCTCAAGACGGCGGCTTCCATCTCCCCAGCGGCCAGCAACTCCTCCTTGACGTCCCTGAGAACTGGTCCGGAAGAATTTGGGGGAGGCAAGGCTGCTGCTTTGATCCAAGCACTGGCAAGGGCTCGTGCCTAACCGGTAGTTGCGCTGGGCTCCTACAATGTAGGGGACTCGGTGGAGTCCCCCCTGCCACACTCGTCGAAATGACACTCGGAACTCCTAAATCCGCCTTGCATTTCTACGATGTGAGCTTGGTTGATGGTTTCAACGTTCCCATTTCCATGGTGCCGATTGGTGGTGGTGTTGGATGTGGTGTTGCTGCTTGTGAGACTGACTTGAATGTATGCTGTCCCCTTGCCTTGGTGGTCAAGAAACAAGGTCGGGTTGTGGGTTGTAAGAGTGCTTGTTTGGCTGCAAAGACAGATAGGTATTGCTGTACTGGGGAGTTTGCAGATCCAAAGAGTTGTAAGCCTAGTGTTTTTGGGCATCTTTTTAAGGCTATTTGTCCCAAGGCTTATAGTTATGCCTTTGATGATTCTACAGGGCTCAAGACCTGTGTGGCTCCTAGGTATGTCATCACATTTTGTCCCCCTAACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

246

Amino Acids

25.84

Weight (kDa)

7.77

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 242 2.2e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 3 cut(s) 150, 168, 363
AclI AACGTT 1 cut(s) 405
AclWI GGATC 4 cut(s) 106, 119, 236, 584
AcoI YGGCCR 2 cut(s) 127, 169
AcsI RAATTY 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 403, 475
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 4 cut(s) 106, 119, 236, 584
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 104, 127, 169
ApeKI GCWGC 4 cut(s) 231, 234, 455, 548
ApoI RAATTY 1 cut(s) 213
AsiGI ACCGGT 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 105, 204
AsuC2I CCSGG 2 cut(s) 108, 109
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 204
AvrII CCTAGG 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 3 cut(s) 263, 291, 684
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 4 cut(s) 218, 221, 442, 535
BccI CCATC 3 cut(s) 53, 165, 389
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 2 cut(s) 108, 109
BcoDI GTCTC 1 cut(s) 458
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 609, 702
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
Bme1390I CCNGG 3 cut(s) 108, 109, 116
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 105, 204
BmiI GGNNCC 4 cut(s) 113, 290, 423, 699
BmrFI CCNGG 3 cut(s) 108, 109, 116
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 126, 668
BpuMI CCSGG 2 cut(s) 108, 109
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BsaWI WCCGGW 2 cut(s) 206, 272
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
Bse118I RCCGGY 2 cut(s) 125, 272
Bse1I ACTGG 3 cut(s) 206, 256, 580
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 206, 256, 580
BseRI GAGGAG 2 cut(s) 129, 170
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 4 cut(s) 218, 221, 442, 535
BseYI CCCAGC 2 cut(s) 164, 284
BshFI GGCC 3 cut(s) 106, 129, 171
BshNI GGYRCC 1 cut(s) 421
BshTI ACCGGT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 108, 126, 207, 273
BslFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BslI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BsnI GGCC 3 cut(s) 106, 129, 171
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 4 cut(s) 122, 263, 291, 684
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 111, 241, 589
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 3 cut(s) 150, 168, 363
BspANI GGCC 3 cut(s) 106, 129, 171
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 4 cut(s) 113, 290, 423, 699
BspPI GGATC 4 cut(s) 106, 119, 236, 584
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 125, 272
BsrI ACTGG 3 cut(s) 206, 256, 580
BssAI RCCGGY 2 cut(s) 125, 272
BssECI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BssMI GATC 3 cut(s) 111, 241, 589
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 4 cut(s) 417, 495, 645, 701
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 127, 173
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 3 cut(s) 114, 244, 592
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 111, 241, 589
BstMWI GCNNNNNNNGC 3 cut(s) 96, 126, 545
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 3 cut(s) 106, 107, 114
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 4 cut(s) 218, 221, 442, 535
BstX2I RGATCY 2 cut(s) 111, 589
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 111, 589
BsuRI GGCC 3 cut(s) 106, 129, 171
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 54, 120, 249
Cac8I GCNNGC 2 cut(s) 127, 173
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 2 cut(s) 125, 272
Cfr13I GGNCC 2 cut(s) 105, 204
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 1 cut(s) 573
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 113, 243, 591
DpnII GATC 3 cut(s) 111, 241, 589
EaeI YGGCCR 2 cut(s) 127, 169
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 4 cut(s) 417, 495, 645, 701
Eco24I GRGCYC 3 cut(s) 263, 291, 684
Eco47I GGWCC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 4 cut(s) 417, 495, 645, 701
EcoT38I GRGCYC 3 cut(s) 263, 291, 684
ErhI CCWWGG 4 cut(s) 417, 495, 645, 701
FaeI CATG 1 cut(s) 421
FaiI YATR 8 cut(s) 77, 101, 103, 419, 481, 654, 660, 708
FaqI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 3 cut(s) 263, 291, 684
Fsp4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FspBI CTAG 3 cut(s) 14, 609, 702
GlaI GCGC 1 cut(s) 283
GluI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
GsaI CCCAGC 2 cut(s) 168, 288
HaeIII GGCC 3 cut(s) 106, 129, 171
HapII CCGG 4 cut(s) 108, 126, 207, 273
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 5 cut(s) 64, 136, 306, 315, 671
HpaII CCGG 4 cut(s) 108, 126, 207, 273
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 4 cut(s) 143, 207, 505, 685
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 189, 405
HpyCH4V TGCA 4 cut(s) 90, 370, 551, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 126, 545
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 189, 405
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 206
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 111, 241, 589
LmnI GCTCC 2 cut(s) 294, 703
Lsp1109I GCAGC 4 cut(s) 218, 221, 442, 535
LweI GCATC 1 cut(s) 631
MaeI CTAG 3 cut(s) 14, 609, 702
MaeII ACGT 2 cut(s) 189, 405
MalI GATC 3 cut(s) 113, 243, 591
MboI GATC 3 cut(s) 111, 241, 589
MboII GAAGA 1 cut(s) 222
MflI RGATCY 2 cut(s) 111, 589
MhlI GDGCHC 4 cut(s) 122, 263, 291, 684
MluCI AATT 1 cut(s) 213
MlyI GAGTC 4 cut(s) 58, 130, 300, 324
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 7 cut(s) 29, 38, 47, 56, 150, 191, 216
MroI TCCGGA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 2 cut(s) 77, 416
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 108, 126, 207, 273
MspR9I CCNGG 3 cut(s) 108, 109, 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 96, 126, 545
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 2 cut(s) 108, 109
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 101
NdeII GATC 3 cut(s) 111, 241, 589
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 4 cut(s) 113, 290, 423, 699
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
PleI GAGTC 4 cut(s) 58, 130, 300, 323
PpsI GAGTC 4 cut(s) 58, 130, 300, 323
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 2 cut(s) 164, 284
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 113, 290, 423, 699
PspPI GGNCC 2 cut(s) 105, 204
PsuI RGATCY 2 cut(s) 111, 589
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 2 cut(s) 77, 416
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
Sau3AI GATC 3 cut(s) 111, 241, 589
Sau96I GGNCC 2 cut(s) 105, 204
SchI GAGTC 4 cut(s) 58, 130, 300, 324
ScrFI CCNGG 3 cut(s) 108, 109, 116
SduI GDGCHC 4 cut(s) 122, 263, 291, 684
SetI ASST 8 cut(s) 135, 192, 389, 408, 517, 566, 692, 707
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 77, 416
SmlI CTYRAG 2 cut(s) 141, 683
SmoI CTYRAG 2 cut(s) 141, 683
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 1 cut(s) 213
SsiI CCGC 3 cut(s) 150, 168, 363
SspMI CTAG 3 cut(s) 14, 609, 702
StyD4I CCNGG 3 cut(s) 106, 107, 114
StyI CCWWGG 4 cut(s) 417, 495, 645, 701
TaiI ACGT 2 cut(s) 192, 408
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 572
TauI GCSGC 2 cut(s) 153, 171
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 3 cut(s) 61, 127, 256
TseI GCWGC 4 cut(s) 231, 234, 455, 548
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 3 cut(s) 61, 127, 256
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 213
XmaI CCCGGG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 701
XspI CTAG 3 cut(s) 14, 609, 702
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.