FvH4_6g16100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011460
Physical Location & Seq
Forward (+)
10139489 .. 10142844
3356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16100.t1

Sequence Viewer

Length: 1380 bp
ATGAGCGATCACCACCACCACCACCACCCGCGTCTCCACCACCTCAAATCGACGCCGCAGCTCCTCCGGCAAGCCTCCTCCTCCTTCGCCTCCAACTTCCTCACCTTCCTCTTTCTCTCCCTCCTCATCTTCTCCTTCCGCACCGTCGTCGAAAATGGCACCCACCTCCTCACCGCCTTCATCGACCGCGACCCTTCCCTCAAGTCCCTCCTCTCCCGCCTCGACCTCGCCGCCTCCCGATCTTCCCCCACCCCCGCCGACTCCTCCCCCTCTCCCCTCACCCTCCGCCGCCGCCACCGCCCCTTCCTCCACCTCACCCGCGTCGGAACCCTCGACGACGACTTCTTCTCCGGCGACGACGACGACTCCCGCTCCGGCAACAACCTCTTCGGCTCCCACCGCAAAGCCCCCGTCTTCATCTTCTCCCAATTCTCCTCCTCCAAATTAGGGTTTAACGGCTCCAGGGTTTCCGACATGGCCCGCTCCGGCCTCTCCTTCAAAGCCGAGCAATTCAGAGACACAGACACCGCCGGCGACGAAGAAGGTAACGAACAAGCCGATGACGAAATCGATGACAAAGATACCAATTCAGAAATCGACAATCGGATTGTGGATTTGCAATTCTTCATCCGAGGATTGGAGCTTGGTCAACGCGACGTGGCGGCCTTGTTCTTCCTTGTGAGCTTTCTATCCGCTGCTTACGGCTGGGTGATTCTAGGGTTTCTGGTGACGTATTCTTGGGTTCTGGGCATTGTGTTCACCACAGTTGTAAATGATCTGATTGGGAGGTTCAATTCGTTTATCGGTCTGGTCTGGGACGGGTCTAGATTAGGAGTCAAGAGATTATCCGGCTTCATTTTGATGAGGTGGGCCGTGAGGGATGCACTCACTCAGCTTCTCGGGTTGTGGTATTTCGGAGAGATTGAGGACCAGTACTCTTTTTTCAAGCTGTTTATCAGGTTGAAGCTGATGCCCTTCTCTGTTATGCCTCCCTGGATTCGAGGCTTCGAGAAGGAGATATCCGGGTTTCTGTTGATGTGGATATTTGTGGATACGGTCGTGGCGTTTGTGTTTGCTGTGGATGCTTGGATTGCGATAGTGGATTCCAGGAAGAGTGGGAAGGAGATTGTGAAGGAGGGTCTGCAGTTGGTGGGATCCATGTTCAGCCAGGCTCTGCAGATTAAGTGCTTGGAGGTTATAGTTTGTGGGACGTCTGTAAAGTGGGGTATGACTCGAGTTTTTGGGAGATCGTTTGCTAAGGTGTTTCAGTCGACTATGGAAGTGTACTTTATGGTGGCATGGTTGATATTTTACTTTGCGGCGAGGGCGAGGTGTAGGGATGCTAGCTCACAGGGGGATAGAATCGGAGCACTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

51.98

Weight (kDa)

7.24

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 14 - 456 5.4e-194 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1214
AccB1I GGYRCC 1 cut(s) 158
AccBSI CCGCTC 2 cut(s) 372, 483
AccI GTMKAC 1 cut(s) 1271
AccII CGCG 4 cut(s) 31, 189, 321, 654
AclWI GGATC 2 cut(s) 1149, 1162
AcyI GRCGYC 2 cut(s) 53, 1211
AfaI GTAC 2 cut(s) 935, 1286
AfiI CCNNNNNNNGG 2 cut(s) 447, 637
AgsI TTSAA 4 cut(s) 499, 793, 946, 964
AjiI CACGTC 1 cut(s) 658
AjnI CCWGG 4 cut(s) 461, 992, 1106, 1167
AluBI AGCT 7 cut(s) 61, 643, 684, 895, 949, 967, 1347
AluI AGCT 7 cut(s) 61, 643, 684, 895, 949, 967, 1347
Alw21I GWGCWC 1 cut(s) 1372
Alw26I GTCTC 2 cut(s) 38, 510
AlwI GGATC 2 cut(s) 1149, 1162
AlwNI CAGNNNCTG 1 cut(s) 1174
Ama87I CYCGRG 2 cut(s) 899, 1233
AoxI GGCC 4 cut(s) 477, 487, 663, 870
ApeKI GCWGC 2 cut(s) 58, 695
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
AspS9I GGNCC 3 cut(s) 478, 870, 928
AsuC2I CCSGG 1 cut(s) 1024
AsuHPI GGTGA 7 cut(s) 94, 163, 271, 307, 721, 739, 751
AsuNHI GCTAGC 1 cut(s) 1343
AvaI CYCGRG 2 cut(s) 899, 1233
AvaII GGWCC 1 cut(s) 928
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BamHI GGATCC 1 cut(s) 1154
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 1372
BbvI GCAGC 2 cut(s) 70, 682
BceAI ACGGC 3 cut(s) 472, 718, 857
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 4 cut(s) 463, 994, 1108, 1169
BciVI GTATCC 1 cut(s) 1045
BcnI CCSGG 1 cut(s) 1024
BcoDI GTCTC 2 cut(s) 38, 510
BfaI CTAG 3 cut(s) 716, 825, 1344
BfmI CTRYAG 2 cut(s) 1142, 1175
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 8 cut(s) 56, 59, 231, 289, 292, 663, 696, 1320
BlsI GCNGC 8 cut(s) 57, 60, 232, 290, 293, 664, 697, 1321
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 5 cut(s) 463, 994, 1024, 1108, 1169
Bme18I GGWCC 1 cut(s) 928
BmeT110I CYCGRG 2 cut(s) 899, 1233
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 478, 870, 928
BmiI GGNNCC 5 cut(s) 160, 328, 394, 460, 1156
BmrFI CCNGG 5 cut(s) 463, 994, 1024, 1108, 1169
BmsI GCATC 4 cut(s) 871, 960, 1072, 1330
BmtI GCTAGC 1 cut(s) 1347
BpiI GAAGAC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 1257
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 1024
Bsa29I ATCGAT 1 cut(s) 570
BsaHI GRCGYC 2 cut(s) 53, 1211
BsaJI CCNNGG 3 cut(s) 462, 631, 992
BsaXI ACNNNNNCTCC 6 cut(s) 332, 350, 356, 362, 380, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 637
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 931
BseBI CCWGG 4 cut(s) 463, 994, 1108, 1169
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 462, 631, 992
BseGI GGATG 4 cut(s) 627, 886, 1087, 1345
BseLI CCNNNNNNNGG 2 cut(s) 447, 637
BseMII CTCAG 1 cut(s) 905
BseNI ACTGG 1 cut(s) 931
BseRI GAGGAG 9 cut(s) 53, 67, 70, 113, 158, 200, 253, 424, 427
BseXI GCAGC 2 cut(s) 70, 682
BseYI CCCAGC 1 cut(s) 705
Bsh1236I CGCG 4 cut(s) 31, 189, 321, 654
Bsh1285I CGRYCG 2 cut(s) 187, 1059
BshFI GGCC 4 cut(s) 479, 489, 665, 872
BshNI GGYRCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 570
BsiEI CGRYCG 2 cut(s) 187, 1059
BsiHKAI GWGCWC 1 cut(s) 1372
BsiHKCI CYCGRG 2 cut(s) 899, 1233
BsiSI CCGG 7 cut(s) 67, 351, 375, 486, 531, 849, 1023
BslFI GGGAC 3 cut(s) 190, 830, 1222
BslI CCNNNNNNNGG 2 cut(s) 447, 637
BsmAI GTCTC 2 cut(s) 38, 510
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 3 cut(s) 190, 830, 1222
BsnI GGCC 4 cut(s) 479, 489, 665, 872
BsoBI CYCGRG 2 cut(s) 899, 1233
Bsp1286I GDGCHC 1 cut(s) 1372
Bsp143I GATC 5 cut(s) 7, 239, 775, 1154, 1247
BspANI GGCC 4 cut(s) 479, 489, 665, 872
BspCNI CTCAG 1 cut(s) 904
BspDI ATCGAT 1 cut(s) 570
BspFNI CGCG 4 cut(s) 31, 189, 321, 654
BspLI GGNNCC 5 cut(s) 160, 328, 394, 460, 1156
BspMAI CTGCAG 2 cut(s) 1146, 1179
BspOI GCTAGC 1 cut(s) 1347
BspPI GGATC 2 cut(s) 1149, 1162
BspT107I GGYRCC 1 cut(s) 158
BsrBI CCGCTC 2 cut(s) 372, 483
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 931
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 462, 631, 992
BssMI GATC 5 cut(s) 7, 239, 775, 1154, 1247
BssNI GRCGYC 2 cut(s) 53, 1211
Bst2UI CCWGG 4 cut(s) 463, 994, 1108, 1169
Bst4CI ACNGT 3 cut(s) 145, 766, 1057
Bst6I CTCTTC 2 cut(s) 392, 1106
BstACI GRCGYC 2 cut(s) 53, 1211
BstC8I GCNNGC 4 cut(s) 72, 481, 532, 1345
BstDEI CTNAG 2 cut(s) 891, 1257
BstF5I GGATG 4 cut(s) 627, 886, 1087, 1345
BstFNI CGCG 4 cut(s) 31, 189, 321, 654
BstKTI GATC 5 cut(s) 10, 242, 778, 1157, 1250
BstMAI GTCTC 2 cut(s) 38, 510
BstMBI GATC 5 cut(s) 7, 239, 775, 1154, 1247
BstMCI CGRYCG 2 cut(s) 187, 1059
BstMWI GCNNNNNNNGC 6 cut(s) 67, 297, 399, 1082, 1091, 1325
BstNI CCWGG 4 cut(s) 463, 994, 1108, 1169
BstSCI CCNGG 5 cut(s) 461, 992, 1022, 1106, 1167
BstSFI CTRYAG 2 cut(s) 1142, 1175
BstUI CGCG 4 cut(s) 31, 189, 321, 654
BstV1I GCAGC 2 cut(s) 70, 682
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 1154
BstYI RGATCY 1 cut(s) 1154
Bsu15I ATCGAT 1 cut(s) 570
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 4 cut(s) 479, 489, 665, 872
BsuTUI ATCGAT 1 cut(s) 570
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 4 cut(s) 627, 886, 1087, 1345
Cac8I GCNNGC 4 cut(s) 72, 481, 532, 1345
CaiI CAGNNNCTG 1 cut(s) 1174
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 478, 870, 928
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 3 cut(s) 20, 61, 310
Csp6I GTAC 2 cut(s) 934, 1285
CviAII CATG 3 cut(s) 475, 1159, 1299
CviQI GTAC 2 cut(s) 934, 1285
DdeI CTNAG 2 cut(s) 891, 1257
DpnI GATC 5 cut(s) 9, 241, 777, 1156, 1249
DpnII GATC 5 cut(s) 7, 239, 775, 1154, 1247
Eam1104I CTCTTC 2 cut(s) 392, 1106
EarI CTCTTC 2 cut(s) 392, 1106
EciI GGCGGA 1 cut(s) 275
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 1 cut(s) 928
Eco88I CYCGRG 2 cut(s) 899, 1233
EcoRII CCWGG 4 cut(s) 461, 992, 1106, 1167
EcoRV GATATC 1 cut(s) 1020
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 478, 1162, 1302
FaiI YATR 8 cut(s) 476, 986, 1160, 1199, 1229, 1277, 1292, 1300
FaqI GGGAC 3 cut(s) 190, 830, 1222
FatI CATG 3 cut(s) 474, 1158, 1298
FauI CCCGC 6 cut(s) 36, 224, 262, 326, 377, 488
FblI GTMKAC 1 cut(s) 1271
Fnu4HI GCNGC 8 cut(s) 56, 59, 231, 289, 292, 663, 696, 1320
FokI GGATG 4 cut(s) 614, 893, 1094, 1352
Fsp4HI GCNGC 8 cut(s) 56, 59, 231, 289, 292, 663, 696, 1320
FspBI CTAG 3 cut(s) 716, 825, 1344
GluI GCNGC 8 cut(s) 56, 59, 231, 289, 292, 663, 696, 1320
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 4 cut(s) 479, 489, 665, 872
HapII CCGG 7 cut(s) 67, 351, 375, 486, 531, 849, 1023
HgaI GACGC 3 cut(s) 20, 61, 310
Hin1I GRCGYC 2 cut(s) 53, 1211
Hin1II CATG 3 cut(s) 478, 1162, 1302
HincII GTYRAC 2 cut(s) 650, 1272
HindII GTYRAC 2 cut(s) 650, 1272
HinfI GANTC 8 cut(s) 260, 365, 712, 834, 997, 1103, 1231, 1362
HpaII CCGG 7 cut(s) 67, 351, 375, 486, 531, 849, 1023
HphI GGTGA 7 cut(s) 94, 163, 271, 307, 721, 739, 751
Hpy166II GTNNAC 4 cut(s) 650, 759, 1272, 1285
Hpy188I TCNGA 9 cut(s) 326, 472, 515, 592, 606, 632, 780, 917, 1367
Hpy188III TCNNGA 4 cut(s) 237, 825, 838, 1009
Hpy8I GTNNAC 4 cut(s) 650, 759, 1272, 1285
HpyCH4III ACNGT 3 cut(s) 145, 766, 1057
HpyCH4IV ACGT 3 cut(s) 657, 731, 1211
HpyCH4V TGCA 4 cut(s) 619, 884, 1144, 1177
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 297, 399, 1082, 1091, 1325
HpyF3I CTNAG 2 cut(s) 891, 1257
HpySE526I ACGT 3 cut(s) 657, 731, 1211
Hsp92I GRCGYC 2 cut(s) 53, 1211
Hsp92II CATG 3 cut(s) 478, 1162, 1302
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Kzo9I GATC 5 cut(s) 7, 239, 775, 1154, 1247
LmnI GCTCC 7 cut(s) 66, 377, 398, 464, 488, 640, 1367
Lsp1109I GCAGC 2 cut(s) 70, 682
LweI GCATC 4 cut(s) 871, 960, 1072, 1330
MaeI CTAG 3 cut(s) 716, 825, 1344
MaeII ACGT 3 cut(s) 657, 731, 1211
MaeIII GTNAC 2 cut(s) 545, 727
MalI GATC 5 cut(s) 9, 241, 777, 1156, 1249
MbiI CCGCTC 2 cut(s) 372, 483
MboI GATC 5 cut(s) 7, 239, 775, 1154, 1247
MflI RGATCY 1 cut(s) 1154
MhlI GDGCHC 1 cut(s) 1372
MluCI AATT 6 cut(s) 428, 443, 509, 586, 620, 793
MlyI GAGTC 4 cut(s) 254, 359, 843, 1225
MmeI TCCRAC 3 cut(s) 117, 304, 495
MreI CGCCGGCG 1 cut(s) 530
MroNI GCCGGC 1 cut(s) 530
MseI TTAA 2 cut(s) 453, 1182
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 7 cut(s) 67, 351, 375, 486, 531, 849, 1023
MspR9I CCNGG 5 cut(s) 463, 994, 1024, 1108, 1169
MvaI CCWGG 4 cut(s) 463, 994, 1108, 1169
MvnI CGCG 4 cut(s) 31, 189, 321, 654
MwoI GCNNNNNNNGC 6 cut(s) 67, 297, 399, 1082, 1091, 1325
NaeI GCCGGC 1 cut(s) 532
NciI CCSGG 1 cut(s) 1024
NdeII GATC 5 cut(s) 7, 239, 775, 1154, 1247
NgoMIV GCCGGC 1 cut(s) 530
NheI GCTAGC 1 cut(s) 1343
NlaIII CATG 3 cut(s) 478, 1162, 1302
NlaIV GGNNCC 5 cut(s) 160, 328, 394, 460, 1156
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 1233
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 555, 1061
PdiI GCCGGC 1 cut(s) 532
PfeI GAWTC 4 cut(s) 712, 997, 1103, 1362
PfoI TCCNGGA 1 cut(s) 1106
PkrI GCNGC 8 cut(s) 57, 60, 232, 290, 293, 664, 697, 1321
PleI GAGTC 4 cut(s) 254, 359, 842, 1225
PpsI GAGTC 4 cut(s) 254, 359, 842, 1225
Psp6I CCWGG 4 cut(s) 461, 992, 1106, 1167
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 4 cut(s) 461, 992, 1106, 1167
PspN4I GGNNCC 5 cut(s) 160, 328, 394, 460, 1156
PspPI GGNCC 3 cut(s) 478, 870, 928
PspXI VCTCGAGB 1 cut(s) 1233
PstI CTGCAG 2 cut(s) 1146, 1179
PstNI CAGNNNCTG 1 cut(s) 1174
PsuI RGATCY 1 cut(s) 1154
RsaI GTAC 2 cut(s) 935, 1286
RsaNI GTAC 2 cut(s) 934, 1285
RseI CAYNNNNRTG 1 cut(s) 860
SalI GTCGAC 1 cut(s) 1270
SaqAI TTAA 2 cut(s) 453, 1182
SatI GCNGC 8 cut(s) 56, 59, 231, 289, 292, 663, 696, 1320
Sau3AI GATC 5 cut(s) 7, 239, 775, 1154, 1247
Sau96I GGNCC 3 cut(s) 478, 870, 928
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 4 cut(s) 254, 359, 843, 1225
ScrFI CCNGG 5 cut(s) 463, 994, 1024, 1108, 1169
SduI GDGCHC 1 cut(s) 1372
SfaNI GCATC 4 cut(s) 871, 960, 1072, 1330
SfcI CTRYAG 2 cut(s) 1142, 1175
Sfr274I CTCGAG 1 cut(s) 1233
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 1 cut(s) 928
SlaI CTCGAG 1 cut(s) 1233
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 2 cut(s) 200, 1233
SmoI CTYRAG 2 cut(s) 200, 1233
Sse9I AATT 6 cut(s) 428, 443, 509, 586, 620, 793
SspMI CTAG 3 cut(s) 716, 825, 1344
StyD4I CCNGG 5 cut(s) 461, 992, 1022, 1106, 1167
TaaI ACNGT 3 cut(s) 145, 766, 1057
TaiI ACGT 3 cut(s) 660, 734, 1214
TaqII GACCGA 1 cut(s) 794
TasI AATT 6 cut(s) 428, 443, 509, 586, 620, 793
TatI WGTACW 2 cut(s) 933, 1284
TauI GCSGC 6 cut(s) 58, 233, 291, 294, 665, 1322
TfiI GAWTC 4 cut(s) 712, 997, 1103, 1362
Tru1I TTAA 2 cut(s) 453, 1182
Tru9I TTAA 2 cut(s) 453, 1182
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 2 cut(s) 58, 695
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 5 cut(s) 169, 406, 616, 844, 1364
VpaK11BI GGWCC 1 cut(s) 928
XbaI TCTAGA 1 cut(s) 824
XhoI CTCGAG 1 cut(s) 1233
XmiI GTMKAC 1 cut(s) 1271
XspI CTAG 3 cut(s) 716, 825, 1344
ZraI GACGTC 1 cut(s) 1212
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.