Rh3CG169200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
14763906 .. 14765697
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG169200.1

Sequence Viewer

Length: 1386 bp
ATGAGCGATCACCACCACCACCAGCACCAGCACCACCCGCGGCTCCACCACCTCAGGAGCACGCCGCAGCTCCTCCGGCAAGCCTCGGCCTCCTTCTTCTCCAACCTCCTCACCTTCCTCTTCCTCTCCCTCCTCATCTTCTCCTTCCGCACCGTCGTCGAGAACGGGACCCACCTCCTCACCGCCTTCATCGACCGCGACCCTTCCCTCAAGTCCCTCCTCTCCCGCCTCGACCTCGCCGCCAACCCCACCTCCTCCCGATCCCCCCAGCCCTCTCCGGTCACCCTCCGCCGCCGCCACCGCCCCTTCCTCCAGCTCACCCGCGTCGGAACCCTCGACGAGGACTTCTTCTCCGGCGAAGACGACGACGACTCCCGCGCCCTCTTCGGCTCCACCCGCAAAGCCCCAATCTTCATCTTCTCTCACTTCACCTCCAAATTAGGGTTTAATGGGACTAGGGTTTCCGACATGGCCCGCTCCGGCCTCTCCTTCAAGGCCGACCAATTCACCATCTCCAATGAGAAAGCGACACACAGAGACGGCGGCGATAATGAGGAGGAAGAAGAAGAGGAAGAAGAGAAAGGCAATTCGGAAACTTCAGAAATGGATCGGATTGTGGATTTGCAATTCTTCATCAAGGGATTGGAGCTGGGTCAACGCGACGTGGCGGCCCTGTTCTTCCTTGTGAGTTTCTTATCTGCTGCATATGGCTGGGTCATTCTAGGGTTTCTTGTTACGTATTCTTGGGTTCTCGGCATTGTGTTCACCACGGTTGTTAATGATCTGATTGGGAGGTTTAATTCGTTTATTGGTTTAGTTTGGGATGGGTCTAGATTGGGAGTCAAGAGATTGTCTGGCTTCATTTTGATGAGGTGGGCCGTGAGAGACGCGCTCACTCAGCTTCTAGGATTGTGGTATTTCGGTGAGATTGAGGACCAGTACTCTTTTTTTAAGCTCTTCATTAGGTTAAAGTTGATGCCTTTCTCTGTTATGCCTCCCTGGATTCGAGGTTTCGAGAAGGAGATTTCCGGGTTTCTGTTGATGTGGATATTTGTGGATACGATTGTGGCGTTTGTCTTTGCCGTGGATGCTTGGATTGCGATAGTCGATTCTAGGAAGAGTGGGAAGGAGATTGTTAAGGAGGGGTTGCAGTTGGTGGGATCCATGTTCAGCCAAGCTCTGCAAATAAAGTGCTTGGAGCTTATATTTTGTGGGACGTCTGTAAAATGGGGCCTCACTCGTGTTTTTGGAAGATCCTTTGCCAAGGTCTTTCAGTCGACCATGGAAGTCTACTTTTTGGTGGCTTGGTTGATATTTTACTTTGCAGCAAGGGCGAGGTGTAGGGATGCTAGCTCACAGGGGGATAGAATTGGAGCACTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

52.58

Weight (kDa)

7.26

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 17 - 458 5.9e-195 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011460)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1220
AccBSI CCGCTC 1 cut(s) 477
AccI GTMKAC 2 cut(s) 1277, 1290
AccII CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
AclWI GGATC 5 cut(s) 255, 615, 1155, 1168, 1248
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 1217
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 2 cut(s) 340, 441
AgsI TTSAA 1 cut(s) 493
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 1 cut(s) 998
AluBI AGCT 8 cut(s) 70, 316, 649, 901, 955, 1178, 1201, 1353
AluI AGCT 8 cut(s) 70, 316, 649, 901, 955, 1178, 1201, 1353
Alw21I GWGCWC 2 cut(s) 62, 1378
Alw26I GTCTC 2 cut(s) 531, 879
AlwI GGATC 5 cut(s) 255, 615, 1155, 1168, 1248
AoxI GGCC 7 cut(s) 87, 471, 481, 495, 669, 876, 1231
ApeKI GCWGC 3 cut(s) 67, 701, 1325
AspLEI GCGC 2 cut(s) 380, 892
AspS9I GGNCC 6 cut(s) 168, 472, 670, 876, 934, 1231
AsuC2I CCSGG 1 cut(s) 1030
AsuHPI GGTGA 8 cut(s) 103, 172, 274, 310, 421, 499, 757, 935
AsuNHI GCTAGC 1 cut(s) 1349
AvaII GGWCC 2 cut(s) 168, 934
AxyI CCTNAGG 1 cut(s) 53
BaeI ACNNNNGTAYC 2 cut(s) 1050, 1083
BamHI GGATCC 1 cut(s) 1160
BauI CACGAG 1 cut(s) 1239
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 62, 1378
BbvI GCAGC 3 cut(s) 79, 688, 1337
BccI CCATC 2 cut(s) 518, 818
BceAI ACGGC 3 cut(s) 556, 863, 1067
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 1000
BciVI GTATCC 1 cut(s) 1051
BcnI CCSGG 1 cut(s) 1030
BcoDI GTCTC 2 cut(s) 531, 879
BfaI CTAG 6 cut(s) 456, 722, 831, 905, 1113, 1350
BfuI GTATCC 1 cut(s) 1051
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 2 cut(s) 1000, 1030
Bme18I GGWCC 2 cut(s) 168, 934
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 6 cut(s) 168, 472, 670, 876, 934, 1231
BmiI GGNNCC 7 cut(s) 44, 169, 170, 331, 391, 1162, 1232
BmrFI CCNGG 2 cut(s) 1000, 1030
BmsI GCATC 3 cut(s) 966, 1078, 1336
BmtI GCTAGC 1 cut(s) 1353
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 1030
BsaAI YACGTR 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 1217
BsaJI CCNNGG 7 cut(s) 38, 84, 768, 998, 1083, 1263, 1281
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 8 cut(s) 236, 266, 335, 356, 365, 386, 416, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 441
Bse1I ACTGG 1 cut(s) 937
Bse21I CCTNAGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 1000
BseDI CCNNGG 7 cut(s) 38, 84, 768, 998, 1083, 1263, 1281
BseGI GGATG 3 cut(s) 829, 1093, 1351
BseLI CCNNNNNNNGG 2 cut(s) 340, 441
BseMII CTCAG 2 cut(s) 67, 911
BseNI ACTGG 1 cut(s) 937
BseRI GAGGAG 7 cut(s) 62, 98, 122, 167, 209, 244, 569
BseXI GCAGC 3 cut(s) 79, 688, 1337
BseYI CCCAGC 3 cut(s) 267, 649, 711
Bsh1236I CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 7 cut(s) 89, 473, 483, 497, 671, 878, 1233
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 62, 1378
BsiSI CCGG 5 cut(s) 76, 278, 354, 480, 1029
BslFI GGGAC 4 cut(s) 181, 199, 466, 1228
BslI CCNNNNNNNGG 2 cut(s) 340, 441
BsmAI GTCTC 2 cut(s) 531, 879
BsmBI CGTCTC 2 cut(s) 531, 879
BsmFI GGGAC 4 cut(s) 181, 199, 466, 1228
BsnI GGCC 7 cut(s) 89, 473, 483, 497, 671, 878, 1233
Bsp1286I GDGCHC 2 cut(s) 62, 1378
Bsp143I GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
Bsp19I CCATGG 1 cut(s) 1281
BspANI GGCC 7 cut(s) 89, 473, 483, 497, 671, 878, 1233
BspCNI CTCAG 2 cut(s) 66, 910
BspFNI CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
BspLI GGNNCC 7 cut(s) 44, 169, 170, 331, 391, 1162, 1232
BspOI GCTAGC 1 cut(s) 1353
BspPI GGATC 5 cut(s) 255, 615, 1155, 1168, 1248
BspQI GCTCTTC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 477
BsrI ACTGG 1 cut(s) 937
BssECI CCNNGG 7 cut(s) 38, 84, 768, 998, 1083, 1263, 1281
BssMI GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
BssNI GRCGYC 1 cut(s) 1217
BssSI CACGAG 1 cut(s) 1239
BssT1I CCWWGG 2 cut(s) 1263, 1281
Bst2BI CACGAG 1 cut(s) 1239
Bst2UI CCWGG 1 cut(s) 1000
Bst4CI ACNGT 2 cut(s) 154, 772
Bst6I CTCTTC 6 cut(s) 125, 389, 561, 570, 962, 1112
BstACI GRCGYC 1 cut(s) 1217
BstBAI YACGTR 1 cut(s) 738
BstC8I GCNNGC 4 cut(s) 62, 81, 475, 1351
BstDEI CTNAG 2 cut(s) 53, 897
BstDSI CCRYGG 4 cut(s) 38, 768, 1083, 1281
BstEII GGTNACC 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 829, 1093, 1351
BstFNI CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
BstHHI GCGC 2 cut(s) 380, 892
BstKTI GATC 6 cut(s) 10, 263, 610, 784, 1163, 1256
BstMAI GTCTC 2 cut(s) 531, 879
BstMBI GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 8 cut(s) 37, 76, 300, 396, 898, 1088, 1097, 1331
BstNI CCWGG 1 cut(s) 1000
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 998, 1028
BstSNI TACGTA 1 cut(s) 738
BstUI CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
BstV1I GCAGC 3 cut(s) 79, 688, 1337
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 1160, 1253
BstYI RGATCY 2 cut(s) 1160, 1253
Bsu36I CCTNAGG 1 cut(s) 53
BsuI GTATCC 1 cut(s) 1051
BsuRI GGCC 7 cut(s) 89, 473, 483, 497, 671, 878, 1233
BtgI CCRYGG 4 cut(s) 38, 768, 1083, 1281
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 3 cut(s) 829, 1093, 1351
Cac8I GCNNGC 4 cut(s) 62, 81, 475, 1351
CfoI GCGC 2 cut(s) 380, 892
Cfr13I GGNCC 6 cut(s) 168, 472, 670, 876, 934, 1231
Cfr42I CCGCGG 1 cut(s) 41
CseI GACGC 2 cut(s) 313, 896
Csp6I GTAC 1 cut(s) 940
CviAII CATG 3 cut(s) 469, 1165, 1282
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 2 cut(s) 53, 897
DpnI GATC 6 cut(s) 9, 262, 609, 783, 1162, 1255
DpnII GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
Eam1104I CTCTTC 6 cut(s) 125, 389, 561, 570, 962, 1112
EarI CTCTTC 6 cut(s) 125, 389, 561, 570, 962, 1112
EciI GGCGGA 1 cut(s) 278
Eco105I TACGTA 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 1263, 1281
Eco47I GGWCC 2 cut(s) 168, 934
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoO109I RGGNCCY 2 cut(s) 168, 1231
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 998
EcoT14I CCWWGG 2 cut(s) 1263, 1281
ErhI CCWWGG 2 cut(s) 1263, 1281
Esp3I CGTCTC 2 cut(s) 531, 879
FaeI CATG 3 cut(s) 472, 1168, 1285
FaiI YATR 7 cut(s) 470, 706, 708, 992, 1166, 1205, 1283
FaqI GGGAC 4 cut(s) 181, 199, 466, 1228
FatI CATG 3 cut(s) 468, 1164, 1281
FauI CCCGC 6 cut(s) 45, 233, 329, 383, 404, 482
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 2 cut(s) 1277, 1290
FokI GGATG 3 cut(s) 836, 1100, 1358
FspBI CTAG 6 cut(s) 456, 722, 831, 905, 1113, 1350
GlaI GCGC 2 cut(s) 379, 891
GsaI CCCAGC 3 cut(s) 271, 653, 715
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 7 cut(s) 89, 473, 483, 497, 671, 878, 1233
HapII CCGG 5 cut(s) 76, 278, 354, 480, 1029
HgaI GACGC 2 cut(s) 313, 896
HhaI GCGC 2 cut(s) 380, 892
Hin1I GRCGYC 1 cut(s) 1217
Hin1II CATG 3 cut(s) 472, 1168, 1285
Hin6I GCGC 2 cut(s) 378, 890
HinP1I GCGC 2 cut(s) 378, 890
HincII GTYRAC 2 cut(s) 656, 1278
HindII GTYRAC 2 cut(s) 656, 1278
HinfI GANTC 4 cut(s) 371, 840, 1003, 1109
HpaII CCGG 5 cut(s) 76, 278, 354, 480, 1029
HphI GGTGA 8 cut(s) 103, 172, 274, 310, 421, 499, 757, 935
Hpy166II GTNNAC 4 cut(s) 656, 765, 1278, 1291
Hpy188I TCNGA 6 cut(s) 329, 466, 592, 601, 612, 786
Hpy188III TCNNGA 6 cut(s) 55, 160, 258, 831, 844, 1015
Hpy8I GTNNAC 4 cut(s) 656, 765, 1278, 1291
Hpy99I CGWCG 7 cut(s) 158, 161, 329, 341, 368, 371, 665
HpyAV CCTTC 9 cut(s) 103, 124, 154, 196, 213, 316, 499, 1012, 1120
HpyCH4III ACNGT 2 cut(s) 154, 772
HpyCH4IV ACGT 3 cut(s) 663, 737, 1217
HpyCH4V TGCA 5 cut(s) 625, 704, 1150, 1183, 1325
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 76, 300, 396, 898, 1088, 1097, 1331
HpyF3I CTNAG 2 cut(s) 53, 897
HpySE526I ACGT 3 cut(s) 663, 737, 1217
Hsp92I GRCGYC 1 cut(s) 1217
Hsp92II CATG 3 cut(s) 472, 1168, 1285
HspAI GCGC 2 cut(s) 378, 890
KflI GGGWCCC 1 cut(s) 168
KspI CCGCGG 1 cut(s) 41
Kzo9I GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
LguI GCTCTTC 1 cut(s) 962
LmnI GCTCC 8 cut(s) 48, 57, 75, 395, 482, 646, 1198, 1373
Lsp1109I GCAGC 3 cut(s) 79, 688, 1337
LweI GCATC 3 cut(s) 966, 1078, 1336
MaeI CTAG 6 cut(s) 456, 722, 831, 905, 1113, 1350
MaeII ACGT 3 cut(s) 663, 737, 1217
MaeIII GTNAC 2 cut(s) 280, 733
MalI GATC 6 cut(s) 9, 262, 609, 783, 1162, 1255
MbiI CCGCTC 1 cut(s) 477
MboI GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
MflI RGATCY 2 cut(s) 1160, 1253
MhlI GDGCHC 2 cut(s) 62, 1378
MluCI AATT 6 cut(s) 437, 503, 586, 626, 799, 1368
MlyI GAGTC 2 cut(s) 365, 849
MmeI TCCRAC 3 cut(s) 126, 307, 489
MseI TTAA 6 cut(s) 447, 777, 798, 951, 968, 1137
MslI CAYNNNNRTG 1 cut(s) 866
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 5 cut(s) 76, 278, 354, 480, 1029
MspR9I CCNGG 2 cut(s) 1000, 1030
MvaI CCWGG 1 cut(s) 1000
MvnI CGCG 6 cut(s) 40, 198, 324, 378, 660, 890
MwoI GCNNNNNNNGC 8 cut(s) 37, 76, 300, 396, 898, 1088, 1097, 1331
NciI CCSGG 1 cut(s) 1030
NcoI CCATGG 1 cut(s) 1281
NdeI CATATG 1 cut(s) 706
NdeII GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
NheI GCTAGC 1 cut(s) 1349
NlaIII CATG 3 cut(s) 472, 1168, 1285
NlaIV GGNNCC 7 cut(s) 44, 169, 170, 331, 391, 1162, 1232
NmeAIII GCCGAG 2 cut(s) 65, 732
NmuCI GTSAC 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 962
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 1067
PfeI GAWTC 2 cut(s) 1003, 1109
PleI GAGTC 2 cut(s) 365, 848
PpsI GAGTC 2 cut(s) 365, 848
Ppu21I YACGTR 1 cut(s) 738
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 998
PspEI GGTNACC 1 cut(s) 280
PspFI CCCAGC 3 cut(s) 267, 649, 711
PspGI CCWGG 1 cut(s) 998
PspN4I GGNNCC 7 cut(s) 44, 169, 170, 331, 391, 1162, 1232
PspPI GGNCC 6 cut(s) 168, 472, 670, 876, 934, 1231
PspPPI RGGWCCY 1 cut(s) 168
PsuI RGATCY 2 cut(s) 1160, 1253
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
RseI CAYNNNNRTG 1 cut(s) 866
SacII CCGCGG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 1276
SapI GCTCTTC 1 cut(s) 962
SaqAI TTAA 6 cut(s) 447, 777, 798, 951, 968, 1137
Sau3AI GATC 6 cut(s) 7, 260, 607, 781, 1160, 1253
Sau96I GGNCC 6 cut(s) 168, 472, 670, 876, 934, 1231
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 2 cut(s) 365, 849
ScrFI CCNGG 2 cut(s) 1000, 1030
SduI GDGCHC 2 cut(s) 62, 1378
SfaNI GCATC 3 cut(s) 966, 1078, 1336
Sfr303I CCGCGG 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 41
SinI GGWCC 2 cut(s) 168, 934
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SnaBI TACGTA 1 cut(s) 738
Sse9I AATT 6 cut(s) 437, 503, 586, 626, 799, 1368
SspMI CTAG 6 cut(s) 456, 722, 831, 905, 1113, 1350
StyD4I CCNGG 2 cut(s) 998, 1028
StyI CCWWGG 2 cut(s) 1263, 1281
TaaI ACNGT 2 cut(s) 154, 772
TaiI ACGT 3 cut(s) 666, 740, 1220
TaqI TCGA 8 cut(s) 159, 192, 231, 336, 1006, 1014, 1107, 1277
TasI AATT 6 cut(s) 437, 503, 586, 626, 799, 1368
TatI WGTACW 1 cut(s) 939
TauI GCSGC 7 cut(s) 43, 67, 242, 294, 297, 546, 671
TfiI GAWTC 2 cut(s) 1003, 1109
Tru1I TTAA 6 cut(s) 447, 777, 798, 951, 968, 1137
Tru9I TTAA 6 cut(s) 447, 777, 798, 951, 968, 1137
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 67, 701, 1325
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 6 cut(s) 178, 403, 622, 850, 949, 1370
VpaK11BI GGWCC 2 cut(s) 168, 934
XagI CCTNNNNNAGG 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 830
XmiI GTMKAC 2 cut(s) 1277, 1290
XspI CTAG 6 cut(s) 456, 722, 831, 905, 1113, 1350
ZraI GACGTC 1 cut(s) 1218
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.