pycom15g07040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011460
Physical Location & Seq
Forward (+)
4291008 .. 4291427
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07040.1

Sequence Viewer

Length: 420 bp
ATGGGACCCACCTCCTCACCTCTTTCGTCGACCGTGACCCTTCTCTCCTACCTCGACCTCGCTGGCGTCGACAATACCAACCACCGCTCTCCCATATCTTCAGTCGAGTCCCTTTCTCCGATCTTTCTCTGTTATCGACACCTCCCATTTCTTCACCTCACCCGCATCGAAACCTTAGACGACGATTTCTTATCCGGCAATGACGACGACGCTCACTCCCTCTTCGGCCCCAATCAGATCGCCCCAATCCTCATTTTCTCCTCCTCCTCTCACTCCACCTCCAAATTAGGGTTTAATGGAACTTACGGGACTAGGGTTTCTGAAATTGTGTGCTCCAGCCTCACGTTCAAGGTTGAGAAATTCACCATTTCTGATGATAGAGCTAGAGGCAGAGATGGAGACGAAGAAAGGTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

5.2

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 13 - 131 2e-13 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AccI GTMKAC 2 cut(s) 29, 69
AciI CCGC 2 cut(s) 85, 163
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 5, 227
AsuHPI GGTGA 4 cut(s) 9, 146, 151, 355
AvaII GGWCC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 2 cut(s) 312, 384
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 227
BmiI GGNNCC 3 cut(s) 6, 7, 229
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 4 cut(s) 4, 250, 253, 256
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 3 cut(s) 18, 94, 322
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 393
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 3 cut(s) 18, 94, 322
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 2 cut(s) 120, 237
BspACI CCGC 2 cut(s) 85, 163
BspANI GGCC 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 6, 7, 229
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 205
BssMI GATC 2 cut(s) 120, 237
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 175
BstKTI GATC 2 cut(s) 123, 240
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 120, 237
BstMCI CGRYCG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 5, 227
CseI GACGC 2 cut(s) 55, 218
CviJI RGCY 3 cut(s) 228, 339, 383
CviKI_1 RGCY 3 cut(s) 228, 339, 383
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 122, 239
DpnII GATC 2 cut(s) 120, 237
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 393
FaiI YATR 1 cut(s) 95
FaqI GGGAC 3 cut(s) 18, 94, 322
FauI CCCGC 1 cut(s) 170
FblI GTMKAC 2 cut(s) 29, 69
FspBI CTAG 2 cut(s) 312, 384
GsuI CTGGAG 1 cut(s) 319
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 195
HgaI GACGC 2 cut(s) 55, 218
Hin1I GRCGYC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 30, 70
HindII GTYRAC 2 cut(s) 30, 70
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 195
HphI GGTGA 4 cut(s) 9, 146, 151, 355
Hpy166II GTNNAC 2 cut(s) 30, 70
Hpy188I TCNGA 4 cut(s) 120, 237, 322, 373
Hpy8I GTNNAC 2 cut(s) 30, 70
Hpy99I CGWCG 5 cut(s) 31, 71, 185, 209, 212
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 66
KflI GGGWCCC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 120, 237
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 3 cut(s) 48, 208, 349
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 312, 384
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 122, 239
MbiI CCGCTC 1 cut(s) 87
MboI GATC 2 cut(s) 120, 237
MboII GAAGA 4 cut(s) 90, 143, 214, 416
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 3 cut(s) 284, 324, 359
MlyI GAGTC 1 cut(s) 116
MseI TTAA 1 cut(s) 294
MspI CCGG 1 cut(s) 195
NdeII GATC 2 cut(s) 120, 237
NlaIV GGNNCC 3 cut(s) 6, 7, 229
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 6, 7, 229
PspPI GGNCC 2 cut(s) 5, 227
PspPPI RGGWCCY 1 cut(s) 5
SalI GTCGAC 2 cut(s) 28, 68
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 2 cut(s) 120, 237
Sau96I GGNCC 2 cut(s) 5, 227
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 1 cut(s) 5
Sse9I AATT 3 cut(s) 284, 324, 359
SsiI CCGC 2 cut(s) 85, 163
SspMI CTAG 2 cut(s) 312, 384
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 347
TaqI TCGA 6 cut(s) 29, 54, 69, 105, 136, 168
TasI AATT 3 cut(s) 284, 324, 359
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 29, 69
XspI CTAG 2 cut(s) 312, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.