RchiOBHm_Chr3g0469941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011460
Physical Location & Seq
Forward (+)
15910935 .. 15912295
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43576

Sequence Viewer

Length: 918 bp
ATGGCCCGCTCCGGCCTCTCCTTCAAGGCCGACCAATTCACCATCTCCAATGAGAAAGCGACACACAGAGACGGCGGCGATAATGAGGAGGAAGAAGAAGAGGAAGAAGAGAAAGGCAATTCGGAAACTTCAGAAATGGATCGGATTGTGGATTTGCAATTCTTCATCAAGGGATTGGAGCTGGGTCAACGCGACGTGGCGGCCCTGTTCTTCCTTGTGAGTTTCTTATCTGCTGCATATGGCTGGGTCATTCTAGGGTTTCTTGTTACGTATTCTTGGGTTCTCGGCATTGTGTTCACCACGGTTGTTAATGATCTGATTGGGAGGTTTAATTCGTTTATTGGTTTAGTTTGGGATGGGTCTAGATTGGGAGTCAAGAGATTGTCTGGCTTCATTTTGATGAGGTGGGCCGTGAGAGACGCGCTCACTCAGCTTCTAGGATTGTGGTATTTCGGTGAGATTGAGGACCAGTACTCTTTTTTTAAGCTCTTCATTAGGTTAAAGTTGATGCCTTTCTCTGTTATGCCTCCCTGGATTCGAGGTTTCGAGAAGGAGATTTCCGGGTTTCTGTTGATGTGGATATTTGTGGATACGATTGTGGCGTTTGTCTTTGCCGTGGATGCTTGGATTGCGATAGTCGATTCTAGGAAGAGTGGGAAGGAGATTGTTAAGGAGGGGTTGCAGTTGGTGGGATCCATGTTCAGCCAAGCTCTGCAAATAAAGTGCTTGGAGCTTATATTTTGTGGGACGTCTGTAAAATGGGGCCTCACTCGTGTTTTTGGAAGATCCTTTGCCAAGGTCTTTCAGTCGACCATGGAAGTCTACTTTTTGGTGGCTTGGTTGATATTTTACTTTGCAGCAAGGGCGAGGTGTAGGGATGCTAGCTCACAGGGGGATAGAATTGGAGCACTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.77

Weight (kDa)

5.45

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 3 - 302 1.3e-142 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 2 cut(s) 809, 822
AccII CGCG 2 cut(s) 192, 422
AciI CCGC 3 cut(s) 7, 75, 200
AclWI GGATC 4 cut(s) 147, 687, 700, 780
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 1 cut(s) 25
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 530
AluBI AGCT 6 cut(s) 181, 433, 487, 710, 733, 885
AluI AGCT 6 cut(s) 181, 433, 487, 710, 733, 885
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 2 cut(s) 63, 411
AlwI GGATC 4 cut(s) 147, 687, 700, 780
AoxI GGCC 6 cut(s) 3, 13, 27, 201, 408, 763
ApeKI GCWGC 2 cut(s) 233, 857
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 5 cut(s) 4, 202, 408, 466, 763
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 31, 289, 467
AsuNHI GCTAGC 1 cut(s) 881
AvaII GGWCC 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BamHI GGATCC 1 cut(s) 692
BauI CACGAG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 2 cut(s) 220, 869
BccI CCATC 2 cut(s) 50, 350
BceAI ACGGC 3 cut(s) 88, 395, 599
BciT130I CCWGG 1 cut(s) 532
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 63, 411
BfaI CTAG 5 cut(s) 254, 363, 437, 645, 882
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 4 cut(s) 76, 201, 234, 858
BlsI GCNGC 4 cut(s) 77, 202, 235, 859
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 532, 562
Bme18I GGWCC 1 cut(s) 466
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 5 cut(s) 4, 202, 408, 466, 763
BmiI GGNNCC 2 cut(s) 694, 764
BmrFI CCNGG 2 cut(s) 532, 562
BmsI GCATC 3 cut(s) 498, 610, 868
BmtI GCTAGC 1 cut(s) 885
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpuMI CCSGG 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 5 cut(s) 300, 530, 615, 795, 813
Bse1I ACTGG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 5 cut(s) 300, 530, 615, 795, 813
BseGI GGATG 3 cut(s) 361, 625, 883
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 220, 869
BseYI CCCAGC 2 cut(s) 181, 243
Bsh1236I CGCG 2 cut(s) 192, 422
BshFI GGCC 6 cut(s) 5, 15, 29, 203, 410, 765
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 2 cut(s) 12, 561
BslFI GGGAC 1 cut(s) 760
BsmAI GTCTC 2 cut(s) 63, 411
BsmBI CGTCTC 2 cut(s) 63, 411
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 6 cut(s) 5, 15, 29, 203, 410, 765
Bsp1286I GDGCHC 1 cut(s) 910
Bsp143I GATC 4 cut(s) 139, 313, 692, 785
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 3 cut(s) 7, 75, 200
BspANI GGCC 6 cut(s) 5, 15, 29, 203, 410, 765
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 2 cut(s) 192, 422
BspLI GGNNCC 2 cut(s) 694, 764
BspOI GCTAGC 1 cut(s) 885
BspPI GGATC 4 cut(s) 147, 687, 700, 780
BspQI GCTCTTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 5 cut(s) 300, 530, 615, 795, 813
BssMI GATC 4 cut(s) 139, 313, 692, 785
BssNI GRCGYC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 795, 813
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 4 cut(s) 93, 102, 494, 644
BstACI GRCGYC 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 7, 883
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 3 cut(s) 300, 615, 813
BstF5I GGATG 3 cut(s) 361, 625, 883
BstFNI CGCG 2 cut(s) 192, 422
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 142, 316, 695, 788
BstMAI GTCTC 2 cut(s) 63, 411
BstMBI GATC 4 cut(s) 139, 313, 692, 785
BstMWI GCNNNNNNNGC 4 cut(s) 430, 620, 629, 863
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 530, 560
BstSNI TACGTA 1 cut(s) 270
BstUI CGCG 2 cut(s) 192, 422
BstV1I GCAGC 2 cut(s) 220, 869
BstX2I RGATCY 2 cut(s) 692, 785
BstYI RGATCY 2 cut(s) 692, 785
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 6 cut(s) 5, 15, 29, 203, 410, 765
BtgI CCRYGG 3 cut(s) 300, 615, 813
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 3 cut(s) 361, 625, 883
Cac8I GCNNGC 2 cut(s) 7, 883
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 5 cut(s) 4, 202, 408, 466, 763
CseI GACGC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 472
CviAII CATG 2 cut(s) 697, 814
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 429
DpnI GATC 4 cut(s) 141, 315, 694, 787
DpnII GATC 4 cut(s) 139, 313, 692, 785
Eam1104I CTCTTC 4 cut(s) 93, 102, 494, 644
EarI CTCTTC 4 cut(s) 93, 102, 494, 644
Eco105I TACGTA 1 cut(s) 270
Eco130I CCWWGG 2 cut(s) 795, 813
Eco47I GGWCC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 795, 813
ErhI CCWWGG 2 cut(s) 795, 813
Esp3I CGTCTC 2 cut(s) 63, 411
FaeI CATG 2 cut(s) 700, 817
FaiI YATR 6 cut(s) 238, 240, 524, 698, 737, 815
FaqI GGGAC 1 cut(s) 760
FatI CATG 2 cut(s) 696, 813
FauI CCCGC 1 cut(s) 14
FauNDI CATATG 1 cut(s) 238
FblI GTMKAC 2 cut(s) 809, 822
Fnu4HI GCNGC 4 cut(s) 76, 201, 234, 858
FokI GGATG 3 cut(s) 368, 632, 890
Fsp4HI GCNGC 4 cut(s) 76, 201, 234, 858
FspBI CTAG 5 cut(s) 254, 363, 437, 645, 882
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 76, 201, 234, 858
GsaI CCCAGC 2 cut(s) 185, 247
HaeIII GGCC 6 cut(s) 5, 15, 29, 203, 410, 765
HapII CCGG 2 cut(s) 12, 561
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 2 cut(s) 700, 817
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 2 cut(s) 188, 810
HindII GTYRAC 2 cut(s) 188, 810
HinfI GANTC 3 cut(s) 372, 535, 641
HpaII CCGG 2 cut(s) 12, 561
HphI GGTGA 3 cut(s) 31, 289, 467
Hpy166II GTNNAC 4 cut(s) 188, 297, 810, 823
Hpy188I TCNGA 4 cut(s) 124, 133, 144, 318
Hpy188III TCNNGA 3 cut(s) 363, 376, 547
Hpy8I GTNNAC 4 cut(s) 188, 297, 810, 823
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 31, 544, 652
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 3 cut(s) 195, 269, 749
HpyCH4V TGCA 5 cut(s) 157, 236, 682, 715, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 430, 620, 629, 863
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 3 cut(s) 195, 269, 749
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 2 cut(s) 700, 817
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 4 cut(s) 139, 313, 692, 785
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 4 cut(s) 14, 178, 730, 905
Lsp1109I GCAGC 2 cut(s) 220, 869
LweI GCATC 3 cut(s) 498, 610, 868
MaeI CTAG 5 cut(s) 254, 363, 437, 645, 882
MaeII ACGT 3 cut(s) 195, 269, 749
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 141, 315, 694, 787
MbiI CCGCTC 1 cut(s) 9
MboI GATC 4 cut(s) 139, 313, 692, 785
MflI RGATCY 2 cut(s) 692, 785
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 5 cut(s) 35, 118, 158, 331, 900
MlyI GAGTC 1 cut(s) 381
MseI TTAA 5 cut(s) 309, 330, 483, 500, 669
MslI CAYNNNNRTG 1 cut(s) 398
MspI CCGG 2 cut(s) 12, 561
MspR9I CCNGG 2 cut(s) 532, 562
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 2 cut(s) 192, 422
MwoI GCNNNNNNNGC 4 cut(s) 430, 620, 629, 863
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 1 cut(s) 813
NdeI CATATG 1 cut(s) 238
NdeII GATC 4 cut(s) 139, 313, 692, 785
NheI GCTAGC 1 cut(s) 881
NlaIII CATG 2 cut(s) 700, 817
NlaIV GGNNCC 2 cut(s) 694, 764
NmeAIII GCCGAG 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PfeI GAWTC 2 cut(s) 535, 641
PkrI GCNGC 4 cut(s) 77, 202, 235, 859
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 530
PspFI CCCAGC 2 cut(s) 181, 243
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 2 cut(s) 694, 764
PspPI GGNCC 5 cut(s) 4, 202, 408, 466, 763
PsuI RGATCY 2 cut(s) 692, 785
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 398
SalI GTCGAC 1 cut(s) 808
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 5 cut(s) 309, 330, 483, 500, 669
SatI GCNGC 4 cut(s) 76, 201, 234, 858
Sau3AI GATC 4 cut(s) 139, 313, 692, 785
Sau96I GGNCC 5 cut(s) 4, 202, 408, 466, 763
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 532, 562
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 3 cut(s) 498, 610, 868
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 398
SnaBI TACGTA 1 cut(s) 270
Sse9I AATT 5 cut(s) 35, 118, 158, 331, 900
SsiI CCGC 3 cut(s) 7, 75, 200
SspMI CTAG 5 cut(s) 254, 363, 437, 645, 882
StyD4I CCNGG 2 cut(s) 530, 560
StyI CCWWGG 2 cut(s) 795, 813
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 3 cut(s) 198, 272, 752
TaqI TCGA 4 cut(s) 538, 546, 639, 809
TasI AATT 5 cut(s) 35, 118, 158, 331, 900
TatI WGTACW 1 cut(s) 471
TauI GCSGC 2 cut(s) 78, 203
TfiI GAWTC 2 cut(s) 535, 641
Tru1I TTAA 5 cut(s) 309, 330, 483, 500, 669
Tru9I TTAA 5 cut(s) 309, 330, 483, 500, 669
TseI GCWGC 2 cut(s) 233, 857
TspDTI ATGAA 4 cut(s) 154, 382, 481, 902
VpaK11BI GGWCC 1 cut(s) 466
XbaI TCTAGA 1 cut(s) 362
XmiI GTMKAC 2 cut(s) 809, 822
XspI CTAG 5 cut(s) 254, 363, 437, 645, 882
ZraI GACGTC 1 cut(s) 750
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.