Rh3DG196500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011460
Physical Location & Seq
Reverse (-)
17613855 .. 17614637
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG196500.1

Sequence Viewer

Length: 783 bp
ATGGATCGGATTGTGGATTTGCAATTCTTCATCAAGGGATTGGAGCTGGGTCAACGCGACGTGGCGGCCCTGTTCTTCCTTGTGAGTTTCTTATCTGCTGCATATGGGTGGGTCATTCTAGGGTTTCTCGTTACGTATTCTTGGGTTCTCGGCATTGTGTTCACCACAGTTGTTAATGATCTGATAGGGAGGTTTAATTCCTTTATTGGTTTAGTTTGGGATGGGTCTAGATTGGGAGTCAAGAGATTGTCTGGCTTCATTTTGATGAGGTGGGCTGTGAGAGACGCGCTCACTCAGCTTCTAGGATTGTGGTATTTCGGCGAGATTGAGGACCAGTACTCTTTTTTCAAGCTCTTCATTAGGTTAAAGTTGATGCCTTTCTCTGTTATGCCTCCCTGGATTCGAGGTTTCGAGAAGGAGATTTCCGGGTTTCTGTTGATGTGGATATTTGTGGATACGATTGTGGCGTTTGTGTTTGCCGTGGATGCTTGGATTGCCATAGTGGATTCTAGGAAGAGTGGGAAGGAGATTGTTAAGGAGGGGTTGCAGTTGGTGGGATCCATGTTCAGCCAAGCTCTGCAAATAAAGTGCTTGGAACTTATATTTTGTGGGACGTCTGTAAAATGGGGCCTCACTCGTGTTTTTGGAAGATCGTTTGCCAAGGTCTTTCAGTCGACCATGGAAGTCTACTTTTTGGTGGCTTGGTTGATATTTTACTTTGCAGCAAGGGCGAGGTGTAGGGATGCTAGCTCACAGGGGGATAGAATTGGAGCACTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.74

Weight (kDa)

9.32

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 2 - 257 1.3e-135 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 617
AccI GTMKAC 2 cut(s) 674, 687
AccII CGCG 2 cut(s) 57, 287
AciI CCGC 1 cut(s) 65
AclWI GGATC 3 cut(s) 12, 552, 565
AcyI GRCGYC 1 cut(s) 614
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 5 cut(s) 46, 298, 352, 575, 750
AluI AGCT 5 cut(s) 46, 298, 352, 575, 750
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 3 cut(s) 12, 552, 565
AoxI GGCC 2 cut(s) 66, 628
ApeKI GCWGC 2 cut(s) 98, 722
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 3 cut(s) 67, 331, 628
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 154
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BamHI GGATCC 1 cut(s) 557
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 2 cut(s) 85, 734
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 397
BciVI GTATCC 1 cut(s) 448
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 5 cut(s) 119, 228, 302, 510, 747
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 3 cut(s) 66, 99, 723
BlsI GCNGC 3 cut(s) 67, 100, 724
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 2 cut(s) 397, 427
Bme18I GGWCC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 67, 331, 628
BmiI GGNNCC 2 cut(s) 559, 629
BmrFI CCNGG 2 cut(s) 397, 427
BmsI GCATC 3 cut(s) 363, 475, 733
BmtI GCTAGC 1 cut(s) 750
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpuMI CCSGG 1 cut(s) 427
BsaAI YACGTR 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 614
BsaJI CCNNGG 4 cut(s) 395, 480, 660, 678
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 4 cut(s) 395, 480, 660, 678
BseGI GGATG 3 cut(s) 226, 490, 748
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 85, 734
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 57, 287
BshFI GGCC 2 cut(s) 68, 630
BsiHKAI GWGCWC 1 cut(s) 775
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 1 cut(s) 625
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 2 cut(s) 68, 630
Bsp1286I GDGCHC 1 cut(s) 775
Bsp143I GATC 4 cut(s) 4, 178, 557, 650
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 68, 630
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 2 cut(s) 57, 287
BspLI GGNNCC 2 cut(s) 559, 629
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 3 cut(s) 12, 552, 565
BspQI GCTCTTC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 4 cut(s) 395, 480, 660, 678
BssMI GATC 4 cut(s) 4, 178, 557, 650
BssNI GRCGYC 1 cut(s) 614
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 660, 678
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 359, 509
BstACI GRCGYC 1 cut(s) 614
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 2 cut(s) 480, 678
BstF5I GGATG 3 cut(s) 226, 490, 748
BstFNI CGCG 2 cut(s) 57, 287
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 4 cut(s) 7, 181, 560, 653
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 4, 178, 557, 650
BstMWI GCNNNNNNNGC 4 cut(s) 295, 485, 494, 728
BstNI CCWGG 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 395, 425
BstSNI TACGTA 1 cut(s) 135
BstUI CGCG 2 cut(s) 57, 287
BstV1I GCAGC 2 cut(s) 85, 734
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 2 cut(s) 68, 630
BtgI CCRYGG 2 cut(s) 480, 678
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 226, 490, 748
Cac8I GCNNGC 1 cut(s) 748
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 67, 331, 628
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 562, 679
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 294
DpnI GATC 4 cut(s) 6, 180, 559, 652
DpnII GATC 4 cut(s) 4, 178, 557, 650
Eam1104I CTCTTC 2 cut(s) 359, 509
EarI CTCTTC 2 cut(s) 359, 509
Eco105I TACGTA 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 660, 678
Eco47I GGWCC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 2 cut(s) 660, 678
ErhI CCWWGG 2 cut(s) 660, 678
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 2 cut(s) 565, 682
FaiI YATR 7 cut(s) 103, 105, 389, 500, 563, 602, 680
FaqI GGGAC 1 cut(s) 625
FatI CATG 2 cut(s) 561, 678
FauNDI CATATG 1 cut(s) 103
FblI GTMKAC 2 cut(s) 674, 687
Fnu4HI GCNGC 3 cut(s) 66, 99, 723
FokI GGATG 3 cut(s) 233, 497, 755
Fsp4HI GCNGC 3 cut(s) 66, 99, 723
FspBI CTAG 5 cut(s) 119, 228, 302, 510, 747
GlaI GCGC 1 cut(s) 288
GluI GCNGC 3 cut(s) 66, 99, 723
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 68, 630
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 2 cut(s) 565, 682
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 2 cut(s) 53, 675
HindII GTYRAC 2 cut(s) 53, 675
HinfI GANTC 3 cut(s) 237, 400, 506
HpaII CCGG 1 cut(s) 426
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 4 cut(s) 53, 162, 675, 688
Hpy188I TCNGA 2 cut(s) 9, 183
Hpy188III TCNNGA 3 cut(s) 228, 241, 412
Hpy8I GTNNAC 4 cut(s) 53, 162, 675, 688
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 409, 517
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 3 cut(s) 60, 134, 614
HpyCH4V TGCA 5 cut(s) 22, 101, 547, 580, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 295, 485, 494, 728
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 60, 134, 614
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 2 cut(s) 565, 682
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 4 cut(s) 4, 178, 557, 650
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 43, 770
LpnPI CCDG 8 cut(s) 32, 83, 237, 347, 382, 409, 439, 740
Lsp1109I GCAGC 2 cut(s) 85, 734
LweI GCATC 3 cut(s) 363, 475, 733
MaeI CTAG 5 cut(s) 119, 228, 302, 510, 747
MaeII ACGT 3 cut(s) 60, 134, 614
MaeIII GTNAC 1 cut(s) 130
MalI GATC 4 cut(s) 6, 180, 559, 652
MboI GATC 4 cut(s) 4, 178, 557, 650
MboII GAAGA 5 cut(s) 19, 67, 346, 526, 660
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 1 cut(s) 775
MluCI AATT 3 cut(s) 23, 196, 765
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 8 cut(s) 183, 261, 322, 398, 402, 532, 641, 726
MseI TTAA 4 cut(s) 174, 195, 365, 534
MslI CAYNNNNRTG 2 cut(s) 106, 263
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 397, 427
MvaI CCWGG 1 cut(s) 397
MvnI CGCG 2 cut(s) 57, 287
MwoI GCNNNNNNNGC 4 cut(s) 295, 485, 494, 728
NciI CCSGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 103
NdeII GATC 4 cut(s) 4, 178, 557, 650
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 2 cut(s) 565, 682
NlaIV GGNNCC 2 cut(s) 559, 629
NmeAIII GCCGAG 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PfeI GAWTC 2 cut(s) 400, 506
PkrI GCNGC 3 cut(s) 67, 100, 724
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 559, 629
PspPI GGNCC 3 cut(s) 67, 331, 628
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 2 cut(s) 106, 263
SalI GTCGAC 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 174, 195, 365, 534
SatI GCNGC 3 cut(s) 66, 99, 723
Sau3AI GATC 4 cut(s) 4, 178, 557, 650
Sau96I GGNCC 3 cut(s) 67, 331, 628
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 397, 427
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 3 cut(s) 363, 475, 733
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 106, 263
SnaBI TACGTA 1 cut(s) 135
Sse9I AATT 3 cut(s) 23, 196, 765
SsiI CCGC 1 cut(s) 65
SspMI CTAG 5 cut(s) 119, 228, 302, 510, 747
StyD4I CCNGG 2 cut(s) 395, 425
StyI CCWWGG 2 cut(s) 660, 678
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 3 cut(s) 63, 137, 617
TaqI TCGA 3 cut(s) 403, 411, 674
TasI AATT 3 cut(s) 23, 196, 765
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 400, 506
Tru1I TTAA 4 cut(s) 174, 195, 365, 534
Tru9I TTAA 4 cut(s) 174, 195, 365, 534
TseI GCWGC 2 cut(s) 98, 722
TspDTI ATGAA 4 cut(s) 19, 247, 346, 767
VpaK11BI GGWCC 1 cut(s) 331
XbaI TCTAGA 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 674, 687
XspI CTAG 5 cut(s) 119, 228, 302, 510, 747
ZraI GACGTC 1 cut(s) 615
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.