Rmu_sc0008347.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008347.1
OG0011460
Physical Location & Seq
Forward (+)
2214 .. 3602
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008347.1_g000001.1.cds

Sequence Viewer

Length: 1389 bp
atgagcgatcaccaccaccagtaccacccgcggctccaccacctcaggagcacgccgcagctcctccggcaagcctcggcctccttcttctccaacctcctcaccttcctcttcctctccctcctcatcttctccttccgcaccgtcgtcgagaacgggacccacctcctcaccgccttcatcgaccgcgacccttccctcaagtccctcctctcccgcctcgacctcgccgccaaccccacctcctcctcctcctcctcccgatccccccagccctctccggtcaccctccgccgccgccaccgccccttcctccagctcacccgcgtcggaaccctcgacgaggacttcttctccggcgaagacgacgacgactcccgcgccctcttcggctccacccgcaaagccccaatcttcatcttctctcacttcacctccaaattagggtttaatgggactagggtttccgacatggcccgctccggcctctccttcaaggccgaccaattcaccatctccaatgagaaagcgacacacagagacggcggcgataatgaggaggaagaagaagagaaagatgagaaaggcaattcggaaacttcagaaatggatcggattgtggatttgcaattcttcatcaagggattggagctgggtcaacgcgacgtggcggccctgttcttccttgtgagtttcttatctgctgcatatggctgggtcattctagggtttctggttacgtattcttgggttctcggcattgtgttcaccacggttgttaatgatctgatagggaggtttaattcgtttattggtttagtttgggatgggtctagattgggagtcaagagattgtctggcttcattttgatgaggtgggccgtgagagacgcgctcactcagcttctaggattgtggtatttcggtgagattgaggaccagtactctttttttaagctcttcattaggttaaagttgatgcctttctctgttatgcctccctggattcggggtttcgagaaggagatttccgggtttctgttgatgtggatatttgtggatacgattgtggcgtttgtctttgccgtggatgcttggattgcgatagtcgattctaggaagagtgggaaggagattgttaaggaggggttgcagttggtgggatccatgttcagccaagctctgcaaataaagtgcttggagcttatattttgtgggacgtctgtaaaatggggcctcactcgtgtttttggaagatcctttgccaaggtctttcagtcgaccatggaagtctactttttggtggcttggttgatattttactttgcagcaagggcgaggtgtagggatgctagctcacagggggatagaattggagcacttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

52.54

Weight (kDa)

8.35

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1223
AccBSI CCGCTC 1 cut(s) 480
AccI GTMKAC 2 cut(s) 1280, 1293
AccII CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
AclWI GGATC 5 cut(s) 258, 618, 1158, 1171, 1251
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 1220
AfaI GTAC 2 cut(s) 23, 944
AfiI CCNNNNNNNGG 3 cut(s) 343, 444, 1008
AgsI TTSAA 1 cut(s) 496
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 1 cut(s) 1001
AluBI AGCT 8 cut(s) 61, 319, 652, 904, 958, 1181, 1204, 1356
AluI AGCT 8 cut(s) 61, 319, 652, 904, 958, 1181, 1204, 1356
Alw21I GWGCWC 2 cut(s) 53, 1381
Alw26I GTCTC 2 cut(s) 534, 882
AlwI GGATC 5 cut(s) 258, 618, 1158, 1171, 1251
AoxI GGCC 7 cut(s) 78, 474, 484, 498, 672, 879, 1234
ApeKI GCWGC 3 cut(s) 58, 704, 1328
AspLEI GCGC 2 cut(s) 383, 895
AspS9I GGNCC 6 cut(s) 159, 475, 673, 879, 937, 1234
AsuC2I CCSGG 1 cut(s) 1033
AsuHPI GGTGA 8 cut(s) 94, 163, 277, 313, 424, 502, 760, 938
AsuNHI GCTAGC 1 cut(s) 1352
AvaII GGWCC 2 cut(s) 159, 937
AxyI CCTNAGG 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 1053, 1086
BamHI GGATCC 1 cut(s) 1163
BauI CACGAG 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 53, 1381
BbvI GCAGC 3 cut(s) 70, 691, 1340
BccI CCATC 2 cut(s) 521, 821
BceAI ACGGC 3 cut(s) 559, 866, 1070
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 1003
BciVI GTATCC 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 1033
BcoDI GTCTC 2 cut(s) 534, 882
BfaI CTAG 6 cut(s) 459, 725, 834, 908, 1116, 1353
BfuI GTATCC 1 cut(s) 1054
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 2 cut(s) 1003, 1033
Bme18I GGWCC 2 cut(s) 159, 937
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 6 cut(s) 159, 475, 673, 879, 937, 1234
BmiI GGNNCC 7 cut(s) 35, 160, 161, 334, 394, 1165, 1235
BmrFI CCNGG 2 cut(s) 1003, 1033
BmsI GCATC 3 cut(s) 969, 1081, 1339
BmtI GCTAGC 1 cut(s) 1356
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 879, 911
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 1033
BsaAI YACGTR 1 cut(s) 741
BsaHI GRCGYC 1 cut(s) 1220
BsaJI CCNNGG 7 cut(s) 29, 75, 771, 1001, 1086, 1266, 1284
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 8 cut(s) 227, 257, 338, 359, 368, 389, 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 444, 1008
Bse1I ACTGG 2 cut(s) 19, 940
Bse21I CCTNAGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 1003
BseDI CCNNGG 7 cut(s) 29, 75, 771, 1001, 1086, 1266, 1284
BseGI GGATG 3 cut(s) 832, 1096, 1354
BseLI CCNNNNNNNGG 3 cut(s) 343, 444, 1008
BseMII CTCAG 2 cut(s) 58, 914
BseNI ACTGG 2 cut(s) 19, 940
BseXI GCAGC 3 cut(s) 70, 691, 1340
BseYI CCCAGC 3 cut(s) 270, 652, 714
Bsh1236I CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 7 cut(s) 80, 476, 486, 500, 674, 881, 1236
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 53, 1381
BsiSI CCGG 5 cut(s) 67, 281, 357, 483, 1032
BslFI GGGAC 4 cut(s) 172, 190, 469, 1231
BslI CCNNNNNNNGG 3 cut(s) 343, 444, 1008
BsmAI GTCTC 2 cut(s) 534, 882
BsmBI CGTCTC 2 cut(s) 534, 882
BsmFI GGGAC 4 cut(s) 172, 190, 469, 1231
BsnI GGCC 7 cut(s) 80, 476, 486, 500, 674, 881, 1236
Bsp1286I GDGCHC 2 cut(s) 53, 1381
Bsp143I GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
Bsp19I CCATGG 1 cut(s) 1284
BspANI GGCC 7 cut(s) 80, 476, 486, 500, 674, 881, 1236
BspCNI CTCAG 2 cut(s) 57, 913
BspFNI CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
BspLI GGNNCC 7 cut(s) 35, 160, 161, 334, 394, 1165, 1235
BspOI GCTAGC 1 cut(s) 1356
BspPI GGATC 5 cut(s) 258, 618, 1158, 1171, 1251
BspQI GCTCTTC 1 cut(s) 965
BsrBI CCGCTC 1 cut(s) 480
BsrI ACTGG 2 cut(s) 19, 940
BssECI CCNNGG 7 cut(s) 29, 75, 771, 1001, 1086, 1266, 1284
BssMI GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
BssNI GRCGYC 1 cut(s) 1220
BssSI CACGAG 1 cut(s) 1242
BssT1I CCWWGG 2 cut(s) 1266, 1284
Bst2BI CACGAG 1 cut(s) 1242
Bst2UI CCWGG 1 cut(s) 1003
Bst4CI ACNGT 2 cut(s) 145, 775
Bst6I CTCTTC 5 cut(s) 116, 392, 564, 965, 1115
BstACI GRCGYC 1 cut(s) 1220
BstBAI YACGTR 1 cut(s) 741
BstC8I GCNNGC 4 cut(s) 53, 72, 478, 1354
BstDEI CTNAG 2 cut(s) 44, 900
BstDSI CCRYGG 4 cut(s) 29, 771, 1086, 1284
BstEII GGTNACC 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 832, 1096, 1354
BstFNI CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
BstHHI GCGC 2 cut(s) 383, 895
BstKTI GATC 6 cut(s) 10, 266, 613, 787, 1166, 1259
BstMAI GTCTC 2 cut(s) 534, 882
BstMBI GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 7 cut(s) 67, 303, 399, 901, 1091, 1100, 1334
BstNI CCWGG 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 1001, 1031
BstSNI TACGTA 1 cut(s) 741
BstUI CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
BstV1I GCAGC 3 cut(s) 70, 691, 1340
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 1163, 1256
BstYI RGATCY 2 cut(s) 1163, 1256
Bsu36I CCTNAGG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 7 cut(s) 80, 476, 486, 500, 674, 881, 1236
BtgI CCRYGG 4 cut(s) 29, 771, 1086, 1284
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 3 cut(s) 832, 1096, 1354
Cac8I GCNNGC 4 cut(s) 53, 72, 478, 1354
CfoI GCGC 2 cut(s) 383, 895
Cfr13I GGNCC 6 cut(s) 159, 475, 673, 879, 937, 1234
Cfr42I CCGCGG 1 cut(s) 32
CseI GACGC 2 cut(s) 316, 899
Csp6I GTAC 2 cut(s) 22, 943
CviAII CATG 3 cut(s) 472, 1168, 1285
CviQI GTAC 2 cut(s) 22, 943
DdeI CTNAG 2 cut(s) 44, 900
DpnI GATC 6 cut(s) 9, 265, 612, 786, 1165, 1258
DpnII GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
Eam1104I CTCTTC 5 cut(s) 116, 392, 564, 965, 1115
EarI CTCTTC 5 cut(s) 116, 392, 564, 965, 1115
EciI GGCGGA 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 1266, 1284
Eco47I GGWCC 2 cut(s) 159, 937
Eco57I CTGAAG 1 cut(s) 585
Eco81I CCTNAGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 2 cut(s) 159, 1234
EcoO65I GGTNACC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 1001
EcoT14I CCWWGG 2 cut(s) 1266, 1284
ErhI CCWWGG 2 cut(s) 1266, 1284
Esp3I CGTCTC 2 cut(s) 534, 882
FaeI CATG 3 cut(s) 475, 1171, 1288
FaiI YATR 7 cut(s) 473, 709, 711, 995, 1169, 1208, 1286
FaqI GGGAC 4 cut(s) 172, 190, 469, 1231
FatI CATG 3 cut(s) 471, 1167, 1284
FauI CCCGC 6 cut(s) 36, 224, 332, 386, 407, 485
FauNDI CATATG 1 cut(s) 709
FblI GTMKAC 2 cut(s) 1280, 1293
FokI GGATG 3 cut(s) 839, 1103, 1361
FspBI CTAG 6 cut(s) 459, 725, 834, 908, 1116, 1353
GlaI GCGC 2 cut(s) 382, 894
GsaI CCCAGC 3 cut(s) 274, 656, 718
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 7 cut(s) 80, 476, 486, 500, 674, 881, 1236
HapII CCGG 5 cut(s) 67, 281, 357, 483, 1032
HgaI GACGC 2 cut(s) 316, 899
HhaI GCGC 2 cut(s) 383, 895
Hin1I GRCGYC 1 cut(s) 1220
Hin1II CATG 3 cut(s) 475, 1171, 1288
Hin6I GCGC 2 cut(s) 381, 893
HinP1I GCGC 2 cut(s) 381, 893
HincII GTYRAC 2 cut(s) 659, 1281
HindII GTYRAC 2 cut(s) 659, 1281
HinfI GANTC 4 cut(s) 374, 843, 1006, 1112
HpaII CCGG 5 cut(s) 67, 281, 357, 483, 1032
HphI GGTGA 8 cut(s) 94, 163, 277, 313, 424, 502, 760, 938
Hpy166II GTNNAC 4 cut(s) 659, 768, 1281, 1294
Hpy188I TCNGA 6 cut(s) 332, 469, 595, 604, 615, 789
Hpy188III TCNNGA 6 cut(s) 46, 151, 261, 834, 847, 1018
Hpy8I GTNNAC 4 cut(s) 659, 768, 1281, 1294
Hpy99I CGWCG 7 cut(s) 149, 152, 332, 344, 371, 374, 668
HpyAV CCTTC 9 cut(s) 94, 115, 145, 187, 204, 319, 502, 1015, 1123
HpyCH4III ACNGT 2 cut(s) 145, 775
HpyCH4IV ACGT 3 cut(s) 666, 740, 1220
HpyCH4V TGCA 5 cut(s) 628, 707, 1153, 1186, 1328
HpyF10VI GCNNNNNNNGC 7 cut(s) 67, 303, 399, 901, 1091, 1100, 1334
HpyF3I CTNAG 2 cut(s) 44, 900
HpySE526I ACGT 3 cut(s) 666, 740, 1220
Hsp92I GRCGYC 1 cut(s) 1220
Hsp92II CATG 3 cut(s) 475, 1171, 1288
HspAI GCGC 2 cut(s) 381, 893
KflI GGGWCCC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 32
Kzo9I GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
LguI GCTCTTC 1 cut(s) 965
LmnI GCTCC 8 cut(s) 39, 48, 66, 398, 485, 649, 1201, 1376
Lsp1109I GCAGC 3 cut(s) 70, 691, 1340
LweI GCATC 3 cut(s) 969, 1081, 1339
MaeI CTAG 6 cut(s) 459, 725, 834, 908, 1116, 1353
MaeII ACGT 3 cut(s) 666, 740, 1220
MaeIII GTNAC 2 cut(s) 283, 736
MalI GATC 6 cut(s) 9, 265, 612, 786, 1165, 1258
MbiI CCGCTC 1 cut(s) 480
MboI GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
MflI RGATCY 2 cut(s) 1163, 1256
MhlI GDGCHC 2 cut(s) 53, 1381
MluCI AATT 6 cut(s) 440, 506, 589, 629, 802, 1371
MlyI GAGTC 2 cut(s) 368, 852
MmeI TCCRAC 3 cut(s) 117, 310, 492
MseI TTAA 6 cut(s) 450, 780, 801, 954, 971, 1140
MslI CAYNNNNRTG 1 cut(s) 869
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 5 cut(s) 67, 281, 357, 483, 1032
MspR9I CCNGG 2 cut(s) 1003, 1033
MvaI CCWGG 1 cut(s) 1003
MvnI CGCG 6 cut(s) 31, 189, 327, 381, 663, 893
MwoI GCNNNNNNNGC 7 cut(s) 67, 303, 399, 901, 1091, 1100, 1334
NciI CCSGG 1 cut(s) 1033
NcoI CCATGG 1 cut(s) 1284
NdeI CATATG 1 cut(s) 709
NdeII GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
NheI GCTAGC 1 cut(s) 1352
NlaIII CATG 3 cut(s) 475, 1171, 1288
NlaIV GGNNCC 7 cut(s) 35, 160, 161, 334, 394, 1165, 1235
NmeAIII GCCGAG 2 cut(s) 56, 735
NmuCI GTSAC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 965
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 1070
PfeI GAWTC 2 cut(s) 1006, 1112
PleI GAGTC 2 cut(s) 368, 851
PpsI GAGTC 2 cut(s) 368, 851
Ppu21I YACGTR 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 1001
PspEI GGTNACC 1 cut(s) 283
PspFI CCCAGC 3 cut(s) 270, 652, 714
PspGI CCWGG 1 cut(s) 1001
PspN4I GGNNCC 7 cut(s) 35, 160, 161, 334, 394, 1165, 1235
PspPI GGNCC 6 cut(s) 159, 475, 673, 879, 937, 1234
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 2 cut(s) 1163, 1256
RsaI GTAC 2 cut(s) 23, 944
RsaNI GTAC 2 cut(s) 22, 943
RseI CAYNNNNRTG 1 cut(s) 869
SacII CCGCGG 1 cut(s) 32
SalI GTCGAC 1 cut(s) 1279
SapI GCTCTTC 1 cut(s) 965
SaqAI TTAA 6 cut(s) 450, 780, 801, 954, 971, 1140
Sau3AI GATC 6 cut(s) 7, 263, 610, 784, 1163, 1256
Sau96I GGNCC 6 cut(s) 159, 475, 673, 879, 937, 1234
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 2 cut(s) 368, 852
ScrFI CCNGG 2 cut(s) 1003, 1033
SduI GDGCHC 2 cut(s) 53, 1381
SfaNI GCATC 3 cut(s) 969, 1081, 1339
Sfr303I CCGCGG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 32
SinI GGWCC 2 cut(s) 159, 937
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SnaBI TACGTA 1 cut(s) 741
Sse9I AATT 6 cut(s) 440, 506, 589, 629, 802, 1371
SspMI CTAG 6 cut(s) 459, 725, 834, 908, 1116, 1353
StyD4I CCNGG 2 cut(s) 1001, 1031
StyI CCWWGG 2 cut(s) 1266, 1284
TaaI ACNGT 2 cut(s) 145, 775
TaiI ACGT 3 cut(s) 669, 743, 1223
TaqI TCGA 7 cut(s) 150, 183, 222, 339, 1017, 1110, 1280
TasI AATT 6 cut(s) 440, 506, 589, 629, 802, 1371
TatI WGTACW 1 cut(s) 942
TauI GCSGC 7 cut(s) 34, 58, 233, 297, 300, 549, 674
TfiI GAWTC 2 cut(s) 1006, 1112
Tru1I TTAA 6 cut(s) 450, 780, 801, 954, 971, 1140
Tru9I TTAA 6 cut(s) 450, 780, 801, 954, 971, 1140
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 58, 704, 1328
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 6 cut(s) 169, 406, 625, 853, 952, 1373
VpaK11BI GGWCC 2 cut(s) 159, 937
XagI CCTNNNNNAGG 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 833
XmiI GTMKAC 2 cut(s) 1280, 1293
XspI CTAG 6 cut(s) 459, 725, 834, 908, 1116, 1353
ZraI GACGTC 1 cut(s) 1221
ZrmI AGTACT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.