Rroxscaffold_5G00354980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011460
Physical Location & Seq
Forward (+)
33561736 .. 33562377
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354980.1

Sequence Viewer

Length: 642 bp
ATGCTCAGCTCCTCCTCCAAGCCTCGGCCTCCTTCTTCTCCAACCTCCTCACCTTCCTCTCTTCTCCTTTCGCACCTTCGTCGAGAACGGCATTCACCTCTTCACCGTCTTCCTCTCCCTCCTCATCTTCTCCTTTCGCACCGTCGTCAAGAACGGCATTCACCTCTTCACCGTCTTCCTCAAGTCCCTCCTCTCCCGCCTCGACCTTGCCGCCAACCCCTCCTTCCGATCCCCCTCGCCAAAATCCCCTTCTCCGGCCACCTCCACCTCTACCATCGCCCCTTCCTCCACCTCACCAGCGTCAGAACCCTCGACGAGGACTTCTTCTCCAGCGACGACAACGACTCCCGCGCCCTCTTTGACTCCACCCACAAAACCCCAATCTTCATCTTCTCTCACTTCACCTCCAAATTAGGGTTTAATGGAACTAGAGTTTCTGACATGGCCATCTCTAGCCTCTCCTTCAAAGCCGACCAATTCACCATCTCCGTGGATTCGAGGTTTCAAGAAGGAGATTTCCGGGTTTATGTTGATGTGGATATTTGGGATACAATTGTGGCGTTTATGTCTACTGTGGATGCTTGGATTGCTATAGTGGATTCTAGGAAGAGTGGGAAGGAGATTGTTACGGAAGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

9.51

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7813 PF25105 90 - 166 6.1e-11 Family of unknown function (DUF7813)
DUF7813 PF25105 181 - 212 5e-08 Family of unknown function (DUF7813)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37035
fragaria_vesca FvH4_6g16100
malus_domestica MD04G1095900.v1.1 MD12G1115900.v1.1
prunus_persica Prupe.6G235000_v2.0.a1
pyrus_communis pycom04g09080 pycom12g11540 pycom15g07040
rosa_chinensis RchiOBHm_Chr3g0469941
rosa_laevigata RLG00000024311
rosa_multiflora Rmu_sc0008347.1_g000001
rosa_roxburghii Rroxscaffold_5G00354980 Rroxscaffold_6G00411350
rosa_rugosa Rorug03G0105600 Rorug05G0154500
rosa_samantha Rh3AG154500 Rh3BG178600 Rh3CG169200 Rh3DG196500
rosa_wichuraiana Rw3G014560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 569
AccII CGCG 1 cut(s) 351
AciI CCGC 3 cut(s) 197, 211, 349
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 2 cut(s) 256, 444
AfiI CCNNNNNNNGG 4 cut(s) 24, 254, 316, 414
AgsI TTSAA 2 cut(s) 466, 506
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 233, 239, 265
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 1 cut(s) 223
AoxI GGCC 3 cut(s) 26, 256, 444
AspLEI GCGC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 8 cut(s) 42, 87, 95, 153, 161, 286, 394, 472
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BalI TGGCCA 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 101, 167
BccI CCATC 3 cut(s) 282, 455, 491
BceAI ACGGC 2 cut(s) 104, 170
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciVI GTATCC 1 cut(s) 541
BcnI CCSGG 1 cut(s) 521
BfaI CTAG 3 cut(s) 429, 453, 603
BfmI CTRYAG 1 cut(s) 591
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 1 cut(s) 211
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 568
BpiI GAAGAC 2 cut(s) 101, 167
BpmI CTGGAG 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 23, 489
BsaXI ACNNNNNCTCC 6 cut(s) 311, 329, 341, 359, 389, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 254, 316, 414
BseDI CCNNGG 2 cut(s) 23, 489
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 4 cut(s) 24, 254, 316, 414
BseMII CTCAG 1 cut(s) 19
BseRI GAGGAG 4 cut(s) 4, 37, 111, 180
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 3 cut(s) 28, 258, 446
BsiSI CCGG 2 cut(s) 255, 520
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 24, 254, 316, 414
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 2 cut(s) 91, 157
BsnI GGCC 3 cut(s) 28, 258, 446
Bsp143I GATC 1 cut(s) 228
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 3 cut(s) 197, 211, 349
BspANI GGCC 3 cut(s) 28, 258, 446
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 351
BspPI GGATC 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 23, 489
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 4 cut(s) 107, 143, 173, 574
Bst6I CTCTTC 4 cut(s) 66, 105, 171, 602
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 489
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 583
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 351
BstV2I GAAGAC 2 cut(s) 101, 167
BstXI CCANNNNNNTGG 1 cut(s) 490
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 3 cut(s) 28, 258, 446
BtgI CCRYGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 583
CfoI GCGC 1 cut(s) 353
CseI GACGC 1 cut(s) 289
CviAII CATG 1 cut(s) 442
CviJI RGCY 7 cut(s) 9, 22, 28, 258, 446, 456, 470
CviKI_1 RGCY 7 cut(s) 9, 22, 28, 258, 446, 456, 470
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 2 cut(s) 256, 444
Eam1104I CTCTTC 4 cut(s) 66, 105, 171, 602
EarI CTCTTC 4 cut(s) 66, 105, 171, 602
EcoNI CCTNNNNNAGG 1 cut(s) 314
FaeI CATG 1 cut(s) 445
FaiI YATR 5 cut(s) 443, 528, 566, 593, 640
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 441
FauI CCCGC 2 cut(s) 204, 356
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 3 cut(s) 429, 453, 603
GlaI GCGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 3 cut(s) 28, 258, 446
HapII CCGG 2 cut(s) 255, 520
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 353
Hin1II CATG 1 cut(s) 445
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 4 cut(s) 344, 362, 494, 599
HpaII CCGG 2 cut(s) 255, 520
HphI GGTGA 8 cut(s) 42, 87, 95, 153, 161, 286, 394, 472
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 3 cut(s) 228, 305, 439
Hpy188III TCNNGA 3 cut(s) 83, 149, 506
Hpy8I GTNNAC 1 cut(s) 570
Hpy99I CGWCG 4 cut(s) 84, 147, 317, 338
HpyCH4III ACNGT 4 cut(s) 107, 143, 173, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 1 cut(s) 445
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 268, 310, 343, 533
LweI GCATC 1 cut(s) 568
MaeI CTAG 3 cut(s) 429, 453, 603
MaeIII GTNAC 1 cut(s) 625
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MfeI CAATTG 1 cut(s) 552
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 3 cut(s) 410, 476, 552
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 2 cut(s) 338, 356
MmeI TCCRAC 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 1 cut(s) 446
MspI CCGG 2 cut(s) 255, 520
MspR9I CCNGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 552
Mva1269I GAATGC 2 cut(s) 91, 157
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 587
NciI CCSGG 1 cut(s) 521
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 4
PctI GAATGC 2 cut(s) 91, 157
PfeI GAWTC 2 cut(s) 494, 599
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 2 cut(s) 338, 356
PpsI GAGTC 2 cut(s) 338, 356
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 338, 356
ScrFI CCNGG 1 cut(s) 521
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 3 cut(s) 410, 476, 552
SsiI CCGC 3 cut(s) 197, 211, 349
SspMI CTAG 3 cut(s) 429, 453, 603
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 4 cut(s) 107, 143, 173, 574
TaqI TCGA 4 cut(s) 82, 202, 312, 497
TasI AATT 3 cut(s) 410, 476, 552
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 494, 599
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 478
XagI CCTNNNNNAGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 3 cut(s) 429, 453, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.