FvH4_6g19860

Encoded by

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
13327844 .. 13329569
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19860.t1

Sequence Viewer

Length: 897 bp
ATGTCGTCGTTATCTTCCTCATCAGACCCGCCGCCTTCTTCTTCAGAGATCCGAATCCGATCGGTATGGGCCGATAACCTCGAGGCCGAGTTCGATATGATCCGATCCGTCATTGACGAATTCCCGATGATCTCCATGGACACGGAGTTTCCCGGCGTCGTGTTCCGCCCCAACGCCGAGGATCCCAAGTTCCGGCGACCCGACGCCGAGGATCCGAATTTCCGGCGCCTGGATCATCGCGGCGCGAACTATCTGGTTCTCAAGGCGAACGTCGACGAACTCAATCTGATCCAGGTCGGCTTGACGCTCTCGGACCGCGCCGGGAATTTGCCGGGTTTAGGATCGGAGATGAGTTATATTTGGGAATTCAATTTCAGAGACTTCGACGTGAGGCGTGATCCCCACGCGCCCGACTCCATCGAGCTGCTGCAGCGCCAGGGCATCGATTTCGAGCGCAACCGCGACAAAGGGATCGACTCGTACAAATTCGCCCAGCTGATGATGTCATCCGGCCTCGTCTGCAACGAAGACGTGACGTGGATCACGTTCCACAGCGCCTACGATTTCGGATACCTGGTCAAGATGCTGACGCAGCAACCGTTGCCGGAGGACCTGCCTGGTTTCTTGAACCGGGTGAAGGTGTTCTTTGGCTCCGGTGGGTACGATGTGAAGCATCTGACCAGGTTCTGTGGTTCTCATCTCTATGGTGGATTGGACGGGGTTTGCAAGGCCTTGAATGTGGGCCGGGCCATCGGAAAAAGTCACCAGGCCGGGTCGGATAGCCTGCTCACTTTTCATGCCTACCAGAGGATCAAAGAGCTGTACTTTGGCGAAGGCGGAATAGAGCAGTACGCTGGCATTTTGTATGGTCTAGAGGTTTCTCGATATTTTCGTTGA

Protein Analysis

299

Amino Acids

33.77

Weight (kDa)

5.23

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 22 - 158 3.1e-08 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 273
AccII CGCG 5 cut(s) 240, 245, 318, 407, 462
AciI CCGC 7 cut(s) 29, 32, 166, 240, 316, 460, 837
AcsI RAATTY 5 cut(s) 119, 217, 325, 365, 485
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 3 cut(s) 156, 204, 226
AfaI GTAC 4 cut(s) 482, 662, 824, 851
AfiI CCNNNNNNNGG 5 cut(s) 192, 229, 338, 637, 807
AgsI TTSAA 3 cut(s) 370, 628, 736
AjiI CACGTC 3 cut(s) 388, 532, 537
AjnI CCWGG 7 cut(s) 228, 291, 435, 573, 616, 680, 765
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 424, 496, 820
AluI AGCT 3 cut(s) 424, 496, 820
Alw26I GTCTC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 7 cut(s) 69, 84, 511, 729, 742, 747, 768
ApeKI GCWGC 4 cut(s) 424, 427, 430, 592
ApoI RAATTY 5 cut(s) 119, 217, 325, 365, 485
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 7 cut(s) 228, 245, 320, 409, 435, 456, 557
AspS9I GGNCC 5 cut(s) 69, 313, 610, 742, 747
AsuC2I CCSGG 6 cut(s) 153, 322, 333, 632, 746, 772
AsuHPI GGTGA 2 cut(s) 646, 755
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 313, 610
BamHI GGATCC 2 cut(s) 181, 211
BanI GGYRCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 411, 414, 442, 604
BccI CCATC 2 cut(s) 425, 758
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 7 cut(s) 230, 293, 437, 575, 618, 682, 767
BciVI GTATCC 1 cut(s) 563
BcnI CCSGG 6 cut(s) 153, 322, 333, 632, 746, 772
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 1 cut(s) 428
BfoI RGCGCY 3 cut(s) 229, 436, 558
BfuAI ACCTGC 1 cut(s) 621
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 6 cut(s) 32, 241, 425, 428, 431, 593
BlsI GCNGC 6 cut(s) 33, 242, 426, 429, 432, 594
Bme18I GGWCC 2 cut(s) 313, 610
BmeT110I CYCGRG 1 cut(s) 80
BmgBI CACGTC 3 cut(s) 388, 532, 537
BmgT120I GGNCC 5 cut(s) 69, 313, 610, 742, 747
BmiI GGNNCC 4 cut(s) 183, 213, 227, 652
BmsI GCATC 3 cut(s) 450, 573, 682
BpiI GAAGAC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 6 cut(s) 153, 322, 333, 632, 746, 772
Bsa29I ATCGAT 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 3 cut(s) 156, 204, 226
BsaJI CCNNGG 4 cut(s) 135, 177, 207, 436
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 229, 338, 637, 807
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 7 cut(s) 230, 293, 437, 575, 618, 682, 767
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 4 cut(s) 135, 177, 207, 436
BseGI GGATG 1 cut(s) 506
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 5 cut(s) 192, 229, 338, 637, 807
BseXI GCAGC 4 cut(s) 411, 414, 442, 604
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 5 cut(s) 240, 245, 318, 407, 462
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 7 cut(s) 71, 86, 513, 731, 744, 749, 770
BshNI GGYRCC 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 5 cut(s) 192, 229, 338, 637, 807
BsmAI GTCTC 1 cut(s) 372
BsnI GGCC 7 cut(s) 71, 86, 513, 731, 744, 749, 770
BsoBI CYCGRG 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 7 cut(s) 29, 32, 166, 240, 316, 460, 837
BspANI GGCC 7 cut(s) 71, 86, 513, 731, 744, 749, 770
BspDI ATCGAT 1 cut(s) 444
BspFNI CGCG 5 cut(s) 240, 245, 318, 407, 462
BspLI GGNNCC 4 cut(s) 183, 213, 227, 652
BspMAI CTGCAG 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 225
BssECI CCNNGG 4 cut(s) 135, 177, 207, 436
BssNI GRCGYC 3 cut(s) 156, 204, 226
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 7 cut(s) 230, 293, 437, 575, 618, 682, 767
Bst4CI ACNGT 1 cut(s) 600
BstACI GRCGYC 3 cut(s) 156, 204, 226
BstAPI GCANNNNNTGC 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 785, 856
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 1 cut(s) 506
BstFNI CGCG 5 cut(s) 240, 245, 318, 407, 462
BstH2I RGCGCY 3 cut(s) 229, 436, 558
BstHHI GCGC 7 cut(s) 228, 245, 320, 409, 435, 456, 557
BstMAI GTCTC 1 cut(s) 372
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 4 cut(s) 430, 519, 592, 601
BstNI CCWGG 7 cut(s) 230, 293, 437, 575, 618, 682, 767
BstSFI CTRYAG 1 cut(s) 428
BstUI CGCG 5 cut(s) 240, 245, 318, 407, 462
BstV1I GCAGC 4 cut(s) 411, 414, 442, 604
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 3 cut(s) 48, 181, 211
BstYI RGATCY 3 cut(s) 48, 181, 211
Bsu15I ATCGAT 1 cut(s) 444
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 7 cut(s) 71, 86, 513, 731, 744, 749, 770
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 221
BtrI CACGTC 3 cut(s) 388, 532, 537
BtsCI GGATG 1 cut(s) 506
BveI ACCTGC 1 cut(s) 621
Cac8I GCNNGC 2 cut(s) 785, 856
CaiI CAGNNNCTG 1 cut(s) 687
CfoI GCGC 7 cut(s) 228, 245, 320, 409, 435, 456, 557
Cfr13I GGNCC 5 cut(s) 69, 313, 610, 742, 747
ClaI ATCGAT 1 cut(s) 444
CpoI CGGWCCG 1 cut(s) 313
CseI GACGC 4 cut(s) 145, 212, 313, 598
CsiI ACCWGGT 2 cut(s) 573, 680
Csp6I GTAC 4 cut(s) 481, 661, 823, 850
CspI CGGWCCG 1 cut(s) 313
CviAII CATG 2 cut(s) 136, 797
CviQI GTAC 4 cut(s) 481, 661, 823, 850
DinI GGCGCC 1 cut(s) 227
EciI GGCGGA 2 cut(s) 155, 852
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 313, 610
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 610
EcoRI GAATTC 2 cut(s) 119, 365
EcoRII CCWGG 7 cut(s) 228, 291, 435, 573, 616, 680, 765
EcoT14I CCWWGG 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 800
FaiI YATR 7 cut(s) 67, 98, 137, 357, 705, 798, 867
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 2 cut(s) 135, 796
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 32, 241, 425, 428, 431, 593
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 6 cut(s) 32, 241, 425, 428, 431, 593
FspBI CTAG 1 cut(s) 872
GlaI GCGC 7 cut(s) 227, 244, 319, 408, 434, 455, 556
GluI GCNGC 6 cut(s) 32, 241, 425, 428, 431, 593
GsaI CCCAGC 1 cut(s) 496
HaeII RGCGCY 3 cut(s) 229, 436, 558
HaeIII GGCC 7 cut(s) 71, 86, 513, 731, 744, 749, 770
HgaI GACGC 4 cut(s) 145, 212, 313, 598
HhaI GCGC 7 cut(s) 228, 245, 320, 409, 435, 456, 557
Hin1I GRCGYC 3 cut(s) 156, 204, 226
Hin1II CATG 2 cut(s) 139, 800
Hin6I GCGC 7 cut(s) 226, 243, 318, 407, 433, 454, 555
HinP1I GCGC 7 cut(s) 226, 243, 318, 407, 433, 454, 555
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 54, 413, 476
HphI GGTGA 2 cut(s) 646, 755
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 5 cut(s) 124, 580, 625, 872, 882
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 6 cut(s) 10, 161, 206, 275, 278, 389
HpyAV CCTTC 3 cut(s) 45, 631, 827
HpyCH4III ACNGT 1 cut(s) 600
HpyCH4IV ACGT 5 cut(s) 270, 387, 531, 536, 545
HpyCH4V TGCA 3 cut(s) 430, 522, 726
HpyF10VI GCNNNNNNNGC 4 cut(s) 430, 519, 592, 601
HpySE526I ACGT 5 cut(s) 270, 387, 531, 536, 545
Hsp92I GRCGYC 3 cut(s) 156, 204, 226
Hsp92II CATG 2 cut(s) 139, 800
HspAI GCGC 7 cut(s) 226, 243, 318, 407, 433, 454, 555
KasI GGCGCC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 4 cut(s) 411, 414, 442, 604
LweI GCATC 3 cut(s) 450, 573, 682
MabI ACCWGGT 2 cut(s) 573, 680
MaeI CTAG 1 cut(s) 872
MaeII ACGT 5 cut(s) 270, 387, 531, 536, 545
MaeIII GTNAC 2 cut(s) 532, 761
MboII GAAGA 4 cut(s) 6, 30, 33, 539
MflI RGATCY 3 cut(s) 48, 181, 211
MluCI AATT 6 cut(s) 119, 217, 325, 365, 370, 485
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 2 cut(s) 407, 470
MmeI TCCRAC 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 641
MslI CAYNNNNRTG 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 496
MvaI CCWGG 7 cut(s) 230, 293, 437, 575, 618, 682, 767
MvnI CGCG 5 cut(s) 240, 245, 318, 407, 462
MwoI GCNNNNNNNGC 4 cut(s) 430, 519, 592, 601
NarI GGCGCC 1 cut(s) 226
NciI CCSGG 6 cut(s) 153, 322, 333, 632, 746, 772
NcoI CCATGG 1 cut(s) 135
NlaIII CATG 2 cut(s) 139, 800
NlaIV GGNNCC 4 cut(s) 183, 213, 227, 652
NmeAIII GCCGAG 3 cut(s) 112, 202, 232
NmuCI GTSAC 2 cut(s) 532, 761
PaeR7I CTCGAG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 731
PcsI WCGNNNNNNNCGW 4 cut(s) 522, 542, 596, 889
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 6 cut(s) 33, 242, 426, 429, 432, 594
Ple19I CGATCG 1 cut(s) 62
PleI GAGTC 2 cut(s) 407, 470
PluTI GGCGCC 1 cut(s) 229
PpsI GAGTC 2 cut(s) 407, 470
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 7 cut(s) 228, 291, 435, 573, 616, 680, 765
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 7 cut(s) 228, 291, 435, 573, 616, 680, 765
PspN4I GGNNCC 4 cut(s) 183, 213, 227, 652
PspPI GGNCC 5 cut(s) 69, 313, 610, 742, 747
PspPPI RGGWCCY 1 cut(s) 610
PspXI VCTCGAGB 1 cut(s) 80
PstI CTGCAG 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 687
PsuI RGATCY 3 cut(s) 48, 181, 211
PvuI CGATCG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 4 cut(s) 482, 662, 824, 851
RsaNI GTAC 4 cut(s) 481, 661, 823, 850
RseI CAYNNNNRTG 1 cut(s) 702
Rsr2I CGGWCCG 1 cut(s) 313
RsrII CGGWCCG 1 cut(s) 313
SalI GTCGAC 1 cut(s) 272
SatI GCNGC 6 cut(s) 32, 241, 425, 428, 431, 593
Sau96I GGNCC 5 cut(s) 69, 313, 610, 742, 747
SchI GAGTC 2 cut(s) 407, 470
SexAI ACCWGGT 2 cut(s) 573, 680
SfaNI GCATC 3 cut(s) 450, 573, 682
SfcI CTRYAG 1 cut(s) 428
SfoI GGCGCC 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 80
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 2 cut(s) 313, 610
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 80, 260
SmoI CTYRAG 2 cut(s) 80, 260
Sse9I AATT 6 cut(s) 119, 217, 325, 365, 370, 485
SseBI AGGCCT 1 cut(s) 731
SsiI CCGC 7 cut(s) 29, 32, 166, 240, 316, 460, 837
SspDI GGCGCC 1 cut(s) 225
SspMI CTAG 1 cut(s) 872
StuI AGGCCT 1 cut(s) 731
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 600
TaiI ACGT 5 cut(s) 273, 390, 534, 539, 548
TaqI TCGA 9 cut(s) 81, 93, 273, 384, 420, 444, 450, 474, 883
TasI AATT 6 cut(s) 119, 217, 325, 365, 370, 485
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 34, 243
TfiI GAWTC 1 cut(s) 54
TseFI GTSAC 2 cut(s) 532, 761
TseI GCWGC 4 cut(s) 424, 427, 430, 592
Tsp45I GTSAC 2 cut(s) 532, 761
TspDTI ATGAA 1 cut(s) 785
TspGWI ACGGA 2 cut(s) 97, 158
VpaK11BI GGWCC 2 cut(s) 313, 610
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 5 cut(s) 119, 217, 325, 365, 485
XbaI TCTAGA 1 cut(s) 871
XhoI CTCGAG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.