MD11G1172400.v1.1

CCR4-associated factor 1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
19108256 .. 19109107
852 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1172400.v1.1.491

Sequence Viewer

Length: 852 bp
ATGTGCCACCGCAAAGTAAGTTCAACTTCGAGTCCGAGTTCGAGTTCCAAGTCGAAGCCGATCGCAATCCGACAAGTGTGGGCCCACAATCTAGAATCTGAGTTCGAACTAATTCGCCAAGTGATCGACGACTGCCCCTTTATTTCGATGGACACAGAATTCCCCGGACTAATATATCGACAGCCGTACAAACACGATACACACCCGACCGATCACTACAAAAACCTCAAATCCAACGTCGACGATCTCAACCTCATCCAGGTGGGCCTCACCCTCTCCGACTCCAGTGGCAACCTCCCCGACCTCGGCTCCCCGACGCCCTACATCTGGGAATTCAACTTCAACGACTTCGACATCGCCCGGGACCGCCACGCTTCAGACTCCATCCAGCTCCTCCGCCGCCAGGGAATCGACTTCGACCGCAACCGCTCCGACGGCATCGCGTCGGCCCGGTTCGCAGAGTTGATGATGTCGTCGGGACTCGTCTGCAACGACTCAGTGAGTTGGGTGGCGTTCCACGGCGCGTACGACTTTGGGTACTTGGTGAAGATCCTCACGGGCCGGAAGGAATTGCCGAGTGGCATGGAAGAGTTTTTGAAGATTGTGAGGGTGTTTTTCGGAAATAGAATTTATGACGTCAAGTACATGATTCGGTTCTGTAACAGCTTGTACGGAGGGCTGGACCAGGTGGCGAAGATTTTAAAGTTGGACCGAGCAGCCGGAAAGTGCCACCAGGCCGGTTCAGATAGCTTGCTGACGTGGCATGCGTTTCAGAAAATTAGGGATGTGTATTTTGTGAATGATGGCCCCGAGAAGCACGCGGGGGTCTTGTATGGATTAGAAGTGCTTTGA

Protein Analysis

284

Amino Acids

32.11

Weight (kDa)

6.36

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 26 - 148 4.1e-15 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 639
AccBSI CCGCTC 1 cut(s) 429
AccI GTMKAC 1 cut(s) 240
AccII CGCG 3 cut(s) 443, 524, 821
AciI CCGC 7 cut(s) 10, 367, 397, 400, 421, 427, 821
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 3 cut(s) 158, 332, 627
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 2 cut(s) 317, 636
AfaI GTAC 5 cut(s) 188, 527, 539, 644, 671
AfiI CCNNNNNNNGG 4 cut(s) 259, 305, 327, 403
AgsI TTSAA 4 cut(s) 24, 337, 343, 598
AjiI CACGTC 1 cut(s) 759
AjnI CCWGG 4 cut(s) 258, 402, 684, 732
AluBI AGCT 3 cut(s) 391, 666, 750
AluI AGCT 3 cut(s) 391, 666, 750
AlwI GGATC 1 cut(s) 544
Ama87I CYCGRG 2 cut(s) 360, 809
AoxI GGCC 6 cut(s) 81, 265, 447, 559, 735, 805
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 716
ApoI RAATTY 3 cut(s) 158, 332, 627
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 9 cut(s) 81, 82, 265, 364, 448, 559, 682, 709, 806
AsuC2I CCSGG 4 cut(s) 165, 361, 362, 451
AsuHPI GGTGA 2 cut(s) 262, 556
AsuII TTCGAA 1 cut(s) 105
AvaI CYCGRG 2 cut(s) 360, 809
AvaII GGWCC 3 cut(s) 364, 682, 709
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 728
BccI CCATC 3 cut(s) 142, 392, 797
BceAI ACGGC 3 cut(s) 169, 451, 535
BciT130I CCWGG 4 cut(s) 260, 404, 686, 734
BcnI CCSGG 4 cut(s) 165, 361, 362, 451
BfaI CTAG 1 cut(s) 92
BisI GCNGC 2 cut(s) 400, 717
BlsI GCNGC 2 cut(s) 401, 718
Bme1390I CCNGG 8 cut(s) 165, 260, 361, 362, 404, 451, 686, 734
Bme18I GGWCC 3 cut(s) 364, 682, 709
BmeT110I CYCGRG 2 cut(s) 360, 809
BmgBI CACGTC 1 cut(s) 759
BmgT120I GGNCC 9 cut(s) 81, 82, 265, 364, 448, 559, 682, 709, 806
BmiI GGNNCC 4 cut(s) 83, 310, 365, 808
BmrFI CCNGG 8 cut(s) 165, 260, 361, 362, 404, 451, 686, 734
BmsI GCATC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 105
BpuMI CCSGG 4 cut(s) 165, 361, 362, 451
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 2 cut(s) 317, 636
BsaJI CCNNGG 5 cut(s) 163, 304, 360, 403, 517
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 305, 327, 403
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 260, 404, 686, 734
BseDI CCNNGG 5 cut(s) 163, 304, 360, 403, 517
BseGI GGATG 3 cut(s) 255, 384, 790
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 4 cut(s) 259, 305, 327, 403
BseMII CTCAG 2 cut(s) 90, 510
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 728
Bsh1236I CGCG 3 cut(s) 443, 524, 821
Bsh1285I CGRYCG 3 cut(s) 63, 210, 421
BshFI GGCC 6 cut(s) 83, 267, 449, 561, 737, 807
BsiEI CGRYCG 3 cut(s) 63, 210, 421
BsiHKCI CYCGRG 2 cut(s) 360, 809
BsiSI CCGG 6 cut(s) 165, 361, 451, 562, 720, 738
BsiWI CGTACG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 377, 492
BslI CCNNNNNNNGG 4 cut(s) 259, 305, 327, 403
BsmFI GGGAC 2 cut(s) 377, 492
BsnI GGCC 6 cut(s) 83, 267, 449, 561, 737, 807
BsoBI CYCGRG 2 cut(s) 360, 809
Bsp119I TTCGAA 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 5 cut(s) 60, 123, 211, 244, 549
BspACI CCGC 7 cut(s) 10, 367, 397, 400, 421, 427, 821
BspANI GGCC 6 cut(s) 83, 267, 449, 561, 737, 807
BspCNI CTCAG 2 cut(s) 91, 509
BspFNI CGCG 3 cut(s) 443, 524, 821
BspLI GGNNCC 4 cut(s) 83, 310, 365, 808
BspPI GGATC 1 cut(s) 544
BspT104I TTCGAA 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 737
BsrI ACTGG 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 5 cut(s) 163, 304, 360, 403, 517
BssMI GATC 5 cut(s) 60, 123, 211, 244, 549
BssNI GRCGYC 2 cut(s) 317, 636
Bst2UI CCWGG 4 cut(s) 260, 404, 686, 734
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 2 cut(s) 317, 636
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 752, 765, 819
BstDEI CTNAG 2 cut(s) 99, 496
BstDSI CCRYGG 1 cut(s) 517
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 255, 384, 790
BstFNI CGCG 3 cut(s) 443, 524, 821
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 5 cut(s) 63, 126, 214, 247, 552
BstMBI GATC 5 cut(s) 60, 123, 211, 244, 549
BstMCI CGRYCG 3 cut(s) 63, 210, 421
BstMWI GCNNNNNNNGC 3 cut(s) 435, 455, 760
BstNI CCWGG 4 cut(s) 260, 404, 686, 734
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 8 cut(s) 163, 258, 359, 360, 402, 449, 684, 732
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 3 cut(s) 443, 524, 821
BstV1I GCAGC 1 cut(s) 728
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BsuRI GGCC 6 cut(s) 83, 267, 449, 561, 737, 807
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 2 cut(s) 340, 424
BtrI CACGTC 1 cut(s) 759
BtsCI GGATG 3 cut(s) 255, 384, 790
BtsIMutI CAGTG 2 cut(s) 292, 504
Cac8I GCNNGC 3 cut(s) 752, 765, 819
CfoI GCGC 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 9 cut(s) 81, 82, 265, 364, 448, 559, 682, 709, 806
Cfr9I CCCGGG 1 cut(s) 360
CseI GACGC 2 cut(s) 325, 432
CsiI ACCWGGT 1 cut(s) 684
Csp6I GTAC 5 cut(s) 187, 526, 538, 643, 670
CviAII CATG 3 cut(s) 583, 646, 764
CviQI GTAC 5 cut(s) 187, 526, 538, 643, 670
DdeI CTNAG 2 cut(s) 99, 496
DpnI GATC 5 cut(s) 62, 125, 213, 246, 551
DpnII GATC 5 cut(s) 60, 123, 211, 244, 549
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 3 cut(s) 364, 682, 709
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 2 cut(s) 360, 809
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRI GAATTC 2 cut(s) 158, 332
EcoRII CCWGG 4 cut(s) 258, 402, 684, 732
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 3 cut(s) 586, 649, 767
FaiI YATR 6 cut(s) 175, 584, 633, 647, 765, 834
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 377, 492
FatI CATG 3 cut(s) 582, 645, 763
FauI CCCGC 1 cut(s) 814
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 400, 717
FokI GGATG 3 cut(s) 242, 371, 797
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 400, 717
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 523
GluI GCNGC 2 cut(s) 400, 717
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 6 cut(s) 83, 267, 449, 561, 737, 807
HapII CCGG 6 cut(s) 165, 361, 451, 562, 720, 738
HgaI GACGC 2 cut(s) 325, 432
HhaI GCGC 1 cut(s) 524
Hin1I GRCGYC 2 cut(s) 317, 636
Hin1II CATG 3 cut(s) 586, 649, 767
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 8 cut(s) 31, 95, 281, 380, 408, 480, 494, 649
HpaII CCGG 6 cut(s) 165, 361, 451, 562, 720, 738
HphI GGTGA 2 cut(s) 262, 556
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 9 cut(s) 36, 71, 100, 280, 379, 433, 620, 745, 774
Hpy188III TCNNGA 2 cut(s) 92, 477
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 7 cut(s) 131, 242, 245, 319, 437, 448, 478
HpyAV CCTTC 1 cut(s) 559
HpyCH4IV ACGT 3 cut(s) 237, 636, 758
HpyCH4V TGCA 1 cut(s) 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 455, 760
HpyF3I CTNAG 2 cut(s) 99, 496
HpySE526I ACGT 3 cut(s) 237, 636, 758
Hsp92I GRCGYC 2 cut(s) 317, 636
Hsp92II CATG 3 cut(s) 586, 649, 767
HspAI GCGC 1 cut(s) 522
Kzo9I GATC 5 cut(s) 60, 123, 211, 244, 549
LmnI GCTCC 3 cut(s) 314, 396, 434
Lsp1109I GCAGC 1 cut(s) 728
LweI GCATC 1 cut(s) 447
MabI ACCWGGT 1 cut(s) 684
MaeI CTAG 1 cut(s) 92
MaeII ACGT 3 cut(s) 237, 636, 758
MaeIII GTNAC 1 cut(s) 659
MalI GATC 5 cut(s) 62, 125, 213, 246, 551
MbiI CCGCTC 1 cut(s) 429
MboI GATC 5 cut(s) 60, 123, 211, 244, 549
MboII GAAGA 4 cut(s) 559, 599, 610, 706
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 6 cut(s) 111, 158, 332, 569, 627, 777
MlyI GAGTC 5 cut(s) 40, 275, 374, 474, 488
MmeI TCCRAC 5 cut(s) 94, 258, 303, 456, 687
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 701
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 6 cut(s) 165, 361, 451, 562, 720, 738
MspR9I CCNGG 8 cut(s) 165, 260, 361, 362, 404, 451, 686, 734
MvaI CCWGG 4 cut(s) 260, 404, 686, 734
MvnI CGCG 3 cut(s) 443, 524, 821
MwoI GCNNNNNNNGC 3 cut(s) 435, 455, 760
NciI CCSGG 4 cut(s) 165, 361, 362, 451
NdeII GATC 5 cut(s) 60, 123, 211, 244, 549
NlaIII CATG 3 cut(s) 586, 649, 767
NlaIV GGNNCC 4 cut(s) 83, 310, 365, 808
NmeAIII GCCGAG 2 cut(s) 285, 600
NspI RCATGY 1 cut(s) 767
NspV TTCGAA 1 cut(s) 105
PaeI GCATGC 1 cut(s) 767
PcsI WCGNNNNNNNCGW 3 cut(s) 489, 525, 764
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 95, 408, 649
Pfl23II CGTACG 1 cut(s) 525
PkrI GCNGC 2 cut(s) 401, 718
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 5 cut(s) 39, 275, 374, 474, 488
PpsI GAGTC 5 cut(s) 39, 275, 374, 474, 488
Psp6I CCWGG 4 cut(s) 258, 402, 684, 732
PspGI CCWGG 4 cut(s) 258, 402, 684, 732
PspLI CGTACG 1 cut(s) 525
PspN4I GGNNCC 4 cut(s) 83, 310, 365, 808
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 9 cut(s) 81, 82, 265, 364, 448, 559, 682, 709, 806
PsuI RGATCY 1 cut(s) 549
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 5 cut(s) 188, 527, 539, 644, 671
RsaNI GTAC 5 cut(s) 187, 526, 538, 643, 670
RseI CAYNNNNRTG 1 cut(s) 260
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 2 cut(s) 400, 717
Sau3AI GATC 5 cut(s) 60, 123, 211, 244, 549
Sau96I GGNCC 9 cut(s) 81, 82, 265, 364, 448, 559, 682, 709, 806
SchI GAGTC 5 cut(s) 40, 275, 374, 474, 488
ScrFI CCNGG 8 cut(s) 165, 260, 361, 362, 404, 451, 686, 734
SduI GDGCHC 1 cut(s) 85
SexAI ACCWGGT 1 cut(s) 684
SfaNI GCATC 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 105
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 3 cut(s) 364, 682, 709
SmaI CCCGGG 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 260
SphI GCATGC 1 cut(s) 767
Sse9I AATT 6 cut(s) 111, 158, 332, 569, 627, 777
SsiI CCGC 7 cut(s) 10, 367, 397, 400, 421, 427, 821
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 8 cut(s) 163, 258, 359, 360, 402, 449, 684, 732
TaiI ACGT 3 cut(s) 240, 639, 761
TaqII GACCGA 2 cut(s) 224, 726
TasI AATT 6 cut(s) 111, 158, 332, 569, 627, 777
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 3 cut(s) 95, 408, 649
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TscAI CASTG 2 cut(s) 292, 504
TseI GCWGC 1 cut(s) 716
TspGWI ACGGA 1 cut(s) 687
TspMI CCCGGG 1 cut(s) 360
TspRI CASTG 2 cut(s) 292, 504
VpaK11BI GGWCC 3 cut(s) 364, 682, 709
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 3 cut(s) 158, 332, 627
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 1 cut(s) 767
XmaI CCCGGG 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 92
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.