Prupe.6G139200_v2.0.a1

CCR4-associated factor 1 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
11302115 .. 11303450
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G139200.1

Sequence Viewer

Length: 852 bp
ATGTACGGCGGCGGCGAAGATCCGAATCCGAAACAAAAACCCATCGTGATCCGGGAAGTGTGGGCCCACAATCTCGAATCCGAATTCGAGCTGATCCAGAGCGTCATCGACGCCTACCCTTTCATCTCCATGGACACCGAGTTCCCGGGCCTCATCTTCCGCCCGGCCGTGGACACCACGAGGCCATACAGCAGCCAACTCCGGCCGTCCGATCACTACAGGGTCCTCAAATCAAACGTCGACGCCCTCAGCCTCATCCAGGTGGGCCTCACCCTCTCCGACTCCCGCGGCAATCTCCCTGACCTCGGCGGCTCCCCCACGCGCTTCATCTGGGAGTTCAACTTCAGCGACTTCGACGTTGCGCGTGACCCCCACGCTCCCGACTCCATCGCCCTCCTCCGCCGCCAGGGCATCGACTTCGACCGCAACCGGTCCGAAGGGGTCGACTCTGCCCGGTTCGCCGCGCTGATGATGTCATCGGGGCTCGTCTGCAACGACTCGGTGAGTTGGGTCACGTTCCACAGCGCATACGACTTCGGCTACCTGGTCAAAATTCTCACTCGCCGGAACTTGCCCAGTGGCTTGGTCGAGTTTTTGAGGATTTTGAGGGTCTTTTTCGGAAACAGAGTTTATGACGTGAAGCACATGATGCGCTTCTGTAAGAGCTTGTACGGCGGGTTGGACCGGGTTGCTAGAACCTTAGAGGTGGACCGGGCGGTCGGAAAGTGCCACCAGGCCGGTTCGGATAGCTTGCTGACATGGCATGCGTTTCAGAAGATGAGGGATGTGTATTTTGTGCATGGCGGGCCTGAGCAACACGCTGGAGTGTTGTATGGGTTGGAAGTGTTTTGA

Protein Analysis

284

Amino Acids

32.06

Weight (kDa)

6.31

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AccI GTMKAC 2 cut(s) 240, 444
AccII CGCG 4 cut(s) 288, 322, 364, 464
AclWI GGATC 3 cut(s) 14, 43, 88
AcoI YGGCCR 2 cut(s) 165, 203
AcsI RAATTY 2 cut(s) 83, 552
AcuI CTGAAG 1 cut(s) 328
AcyI GRCGYC 2 cut(s) 111, 243
AfaI GTAC 2 cut(s) 5, 671
AfiI CCNNNNNNNGG 4 cut(s) 169, 259, 305, 406
AgeI ACCGGT 1 cut(s) 429
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 4 cut(s) 258, 405, 543, 732
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 91, 666, 750
AluI AGCT 3 cut(s) 91, 666, 750
AlwI GGATC 3 cut(s) 14, 43, 88
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 8 cut(s) 63, 148, 165, 182, 203, 265, 735, 806
ApaI GGGCCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 2 cut(s) 83, 552
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsiGI ACCGGT 1 cut(s) 429
AspLEI GCGC 5 cut(s) 324, 364, 466, 527, 654
AspS9I GGNCC 9 cut(s) 63, 64, 148, 223, 265, 432, 682, 709, 806
AsuC2I CCSGG 7 cut(s) 53, 146, 147, 164, 454, 686, 713
AsuHPI GGTGA 2 cut(s) 262, 514
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 4 cut(s) 223, 432, 682, 709
BaeGI GKGCMC 1 cut(s) 67
BanII GRGCYC 2 cut(s) 67, 486
BauI CACGAG 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 50, 395
BceAI ACGGC 4 cut(s) 22, 152, 190, 688
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 4 cut(s) 260, 407, 545, 734
BcnI CCSGG 7 cut(s) 53, 146, 147, 164, 454, 686, 713
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 7 cut(s) 10, 13, 193, 289, 310, 403, 462
BlsI GCNGC 7 cut(s) 11, 14, 194, 290, 311, 404, 463
Bme18I GGWCC 4 cut(s) 223, 432, 682, 709
BmeT110I CYCGRG 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 9 cut(s) 63, 64, 148, 223, 265, 432, 682, 709, 806
BmiI GGNNCC 3 cut(s) 65, 224, 313
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 420, 639
BmuI ACTGGG 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 2 cut(s) 248, 810
BpuMI CCSGG 7 cut(s) 53, 146, 147, 164, 454, 686, 713
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 2 cut(s) 111, 243
BsaJI CCNNGG 6 cut(s) 129, 145, 168, 286, 304, 406
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 259, 305, 406
Bse118I RCCGGY 2 cut(s) 429, 737
Bse1I ACTGG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 4 cut(s) 260, 407, 545, 734
BseDI CCNNGG 6 cut(s) 129, 145, 168, 286, 304, 406
BseGI GGATG 2 cut(s) 255, 790
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 4 cut(s) 169, 259, 305, 406
BseMII CTCAG 2 cut(s) 262, 801
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 67
BseX3I CGGCCG 2 cut(s) 165, 203
BseXI GCAGC 1 cut(s) 204
Bsh1236I CGCG 4 cut(s) 288, 322, 364, 464
Bsh1285I CGRYCG 4 cut(s) 168, 206, 424, 720
BshFI GGCC 8 cut(s) 65, 150, 167, 184, 205, 267, 737, 808
BshTI ACCGGT 1 cut(s) 429
BsiEI CGRYCG 4 cut(s) 168, 206, 424, 720
BsiHKCI CYCGRG 1 cut(s) 145
BslI CCNNNNNNNGG 4 cut(s) 169, 259, 305, 406
BsnI GGCC 8 cut(s) 65, 150, 167, 184, 205, 267, 737, 808
BsoBI CYCGRG 1 cut(s) 145
Bsp120I GGGCCC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 67, 486
Bsp143I GATC 4 cut(s) 19, 48, 93, 211
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 8 cut(s) 65, 150, 167, 184, 205, 267, 737, 808
BspCNI CTCAG 2 cut(s) 261, 802
BspFNI CGCG 4 cut(s) 288, 322, 364, 464
BspLI GGNNCC 3 cut(s) 65, 224, 313
BspPI GGATC 3 cut(s) 14, 43, 88
BsrFI RCCGGY 2 cut(s) 429, 737
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 2 cut(s) 429, 737
BssECI CCNNGG 6 cut(s) 129, 145, 168, 286, 304, 406
BssMI GATC 4 cut(s) 19, 48, 93, 211
BssNI GRCGYC 2 cut(s) 111, 243
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 4 cut(s) 260, 407, 545, 734
BstACI GRCGYC 2 cut(s) 111, 243
BstAPI GCANNNNNTGC 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 752, 765, 806
BstDEI CTNAG 3 cut(s) 248, 700, 810
BstDSI CCRYGG 3 cut(s) 129, 168, 286
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 255, 790
BstFNI CGCG 4 cut(s) 288, 322, 364, 464
BstHHI GCGC 5 cut(s) 324, 364, 466, 527, 654
BstKTI GATC 4 cut(s) 22, 51, 96, 214
BstMBI GATC 4 cut(s) 19, 48, 93, 211
BstMCI CGRYCG 4 cut(s) 168, 206, 424, 720
BstMWI GCNNNNNNNGC 6 cut(s) 408, 458, 649, 672, 760, 805
BstNI CCWGG 4 cut(s) 260, 407, 545, 734
BstNSI RCATGY 1 cut(s) 767
BstSFI CTRYAG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 67
BstUI CGCG 4 cut(s) 288, 322, 364, 464
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 19
BstZI CGGCCG 2 cut(s) 165, 203
BsuRI GGCC 8 cut(s) 65, 150, 167, 184, 205, 267, 737, 808
BtgI CCRYGG 3 cut(s) 129, 168, 286
BtgZI GCGATG 1 cut(s) 373
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 2 cut(s) 255, 790
BtsIMutI CAGTG 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 752, 765, 806
CfoI GCGC 5 cut(s) 324, 364, 466, 527, 654
Cfr10I RCCGGY 2 cut(s) 429, 737
Cfr13I GGNCC 9 cut(s) 63, 64, 148, 223, 265, 432, 682, 709, 806
Cfr42I CCGCGG 1 cut(s) 289
Cfr9I CCCGGG 1 cut(s) 145
CpoI CGGWCCG 1 cut(s) 432
CseI GACGC 3 cut(s) 91, 119, 251
CsiI ACCWGGT 1 cut(s) 543
Csp6I GTAC 2 cut(s) 4, 670
CspAI ACCGGT 1 cut(s) 429
CspI CGGWCCG 1 cut(s) 432
CviAII CATG 5 cut(s) 130, 646, 759, 764, 800
CviQI GTAC 2 cut(s) 4, 670
DdeI CTNAG 3 cut(s) 248, 700, 810
DpnI GATC 4 cut(s) 21, 50, 95, 213
DpnII GATC 4 cut(s) 19, 48, 93, 211
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 2 cut(s) 165, 203
EagI CGGCCG 2 cut(s) 165, 203
EciI GGCGGA 2 cut(s) 149, 389
EclXI CGGCCG 2 cut(s) 165, 203
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 67, 486
Eco47I GGWCC 4 cut(s) 223, 432, 682, 709
Eco52I CGGCCG 2 cut(s) 165, 203
Eco57I CTGAAG 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 4 cut(s) 258, 405, 543, 732
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 67, 486
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 5 cut(s) 133, 649, 762, 767, 803
FaiI YATR 9 cut(s) 131, 187, 529, 633, 647, 760, 765, 801, 834
FatI CATG 5 cut(s) 129, 645, 758, 763, 799
FauI CCCGC 3 cut(s) 293, 668, 797
FblI GTMKAC 2 cut(s) 240, 444
Fnu4HI GCNGC 7 cut(s) 10, 13, 193, 289, 310, 403, 462
FokI GGATG 2 cut(s) 242, 797
FriOI GRGCYC 2 cut(s) 67, 486
Fsp4HI GCNGC 7 cut(s) 10, 13, 193, 289, 310, 403, 462
FspBI CTAG 1 cut(s) 693
GlaI GCGC 5 cut(s) 323, 363, 465, 526, 653
GluI GCNGC 7 cut(s) 10, 13, 193, 289, 310, 403, 462
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 8 cut(s) 65, 150, 167, 184, 205, 267, 737, 808
HgaI GACGC 3 cut(s) 91, 119, 251
HhaI GCGC 5 cut(s) 324, 364, 466, 527, 654
Hin1I GRCGYC 2 cut(s) 111, 243
Hin1II CATG 5 cut(s) 133, 649, 762, 767, 803
Hin6I GCGC 5 cut(s) 322, 362, 464, 525, 652
HinP1I GCGC 5 cut(s) 322, 362, 464, 525, 652
HincII GTYRAC 2 cut(s) 241, 445
HindII GTYRAC 2 cut(s) 241, 445
HinfI GANTC 6 cut(s) 25, 77, 281, 383, 446, 497
HphI GGTGA 2 cut(s) 262, 514
Hpy166II GTNNAC 4 cut(s) 172, 241, 445, 709
Hpy188III TCNNGA 4 cut(s) 46, 74, 97, 380
Hpy8I GTNNAC 4 cut(s) 172, 241, 445, 709
Hpy99I CGWCG 4 cut(s) 113, 242, 245, 359
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 4 cut(s) 237, 357, 515, 636
HpyCH4V TGCA 2 cut(s) 492, 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 408, 458, 649, 672, 760, 805
HpyF3I CTNAG 3 cut(s) 248, 700, 810
HpySE526I ACGT 4 cut(s) 237, 357, 515, 636
Hsp92I GRCGYC 2 cut(s) 111, 243
Hsp92II CATG 5 cut(s) 133, 649, 762, 767, 803
HspAI GCGC 5 cut(s) 322, 362, 464, 525, 652
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 4 cut(s) 19, 48, 93, 211
LmnI GCTCC 2 cut(s) 317, 382
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 420, 639
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 1 cut(s) 693
MaeII ACGT 4 cut(s) 237, 357, 515, 636
MaeIII GTNAC 2 cut(s) 365, 511
MalI GATC 4 cut(s) 21, 50, 95, 213
MboI GATC 4 cut(s) 19, 48, 93, 211
MboII GAAGA 3 cut(s) 29, 148, 787
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 67, 486
MluCI AATT 2 cut(s) 83, 552
MlyI GAGTC 4 cut(s) 275, 377, 440, 491
MmeI TCCRAC 4 cut(s) 303, 660, 700, 819
MslI CAYNNNNRTG 2 cut(s) 128, 260
MspA1I CMGCKG 1 cut(s) 288
MvaI CCWGG 4 cut(s) 260, 407, 545, 734
MvnI CGCG 4 cut(s) 288, 322, 364, 464
MwoI GCNNNNNNNGC 6 cut(s) 408, 458, 649, 672, 760, 805
NciI CCSGG 7 cut(s) 53, 146, 147, 164, 454, 686, 713
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 19, 48, 93, 211
NlaIII CATG 5 cut(s) 133, 649, 762, 767, 803
NlaIV GGNNCC 3 cut(s) 65, 224, 313
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 365, 511
NspI RCATGY 1 cut(s) 767
PaeI GCATGC 1 cut(s) 767
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 492
PfeI GAWTC 2 cut(s) 25, 77
PfoI TCCNGGA 1 cut(s) 51
PinAI ACCGGT 1 cut(s) 429
PkrI GCNGC 7 cut(s) 11, 14, 194, 290, 311, 404, 463
PleI GAGTC 4 cut(s) 275, 377, 440, 491
PpsI GAGTC 4 cut(s) 275, 377, 440, 491
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 4 cut(s) 258, 405, 543, 732
PspGI CCWGG 4 cut(s) 258, 405, 543, 732
PspN4I GGNNCC 3 cut(s) 65, 224, 313
PspOMI GGGCCC 1 cut(s) 63
PspPI GGNCC 9 cut(s) 63, 64, 148, 223, 265, 432, 682, 709, 806
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 2 cut(s) 5, 671
RsaNI GTAC 2 cut(s) 4, 670
RseI CAYNNNNRTG 2 cut(s) 128, 260
Rsr2I CGGWCCG 1 cut(s) 432
RsrII CGGWCCG 1 cut(s) 432
SacII CCGCGG 1 cut(s) 289
SalI GTCGAC 2 cut(s) 239, 443
SatI GCNGC 7 cut(s) 10, 13, 193, 289, 310, 403, 462
Sau3AI GATC 4 cut(s) 19, 48, 93, 211
Sau96I GGNCC 9 cut(s) 63, 64, 148, 223, 265, 432, 682, 709, 806
SchI GAGTC 4 cut(s) 275, 377, 440, 491
SduI GDGCHC 2 cut(s) 67, 486
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 2 cut(s) 420, 639
SfcI CTRYAG 1 cut(s) 217
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 4 cut(s) 223, 432, 682, 709
SmaI CCCGGG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 128, 260
SphI GCATGC 1 cut(s) 767
Sse9I AATT 2 cut(s) 83, 552
SspMI CTAG 1 cut(s) 693
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 4 cut(s) 240, 360, 518, 639
TaqI TCGA 9 cut(s) 75, 87, 108, 240, 354, 414, 420, 444, 588
TasI AATT 2 cut(s) 83, 552
TauI GCSGC 6 cut(s) 12, 15, 291, 312, 405, 464
TfiI GAWTC 2 cut(s) 25, 77
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 365, 511
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 2 cut(s) 365, 511
TspDTI ATGAA 2 cut(s) 112, 316
TspMI CCCGGG 1 cut(s) 145
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 4 cut(s) 223, 432, 682, 709
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 2 cut(s) 83, 552
XceI RCATGY 1 cut(s) 767
XmaI CCCGGG 1 cut(s) 145
XmiI GTMKAC 2 cut(s) 240, 444
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.