CCR4-associated factor 1 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44260 AT5G22250 |
| fragaria_vesca | FvH4_3g25960 FvH4_6g19860 |
| malus_domestica | MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1 |
| prunus_persica | Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1 |
| pyrus_communis | pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120 |
| rosa_chinensis | RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241 |
| rosa_laevigata | RLG00000023855 RLG00000034481 |
| rosa_roxburghii | Rroxscaffold_1G00034130 Rroxscaffold_6G00406420 |
| rosa_rugosa | Rorug03G0147600 Rorug05G0235200 |
| rosa_samantha | Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600 |
| rosa_wichuraiana | Rw3G017960 Rw5G029350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 716 |
| AccI | GTMKAC | 2 cut(s) | 240, 444 |
| AccII | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| AclWI | GGATC | 3 cut(s) | 14, 43, 88 |
| AcoI | YGGCCR | 2 cut(s) | 165, 203 |
| AcsI | RAATTY | 2 cut(s) | 83, 552 |
| AcuI | CTGAAG | 1 cut(s) | 328 |
| AcyI | GRCGYC | 2 cut(s) | 111, 243 |
| AfaI | GTAC | 2 cut(s) | 5, 671 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 169, 259, 305, 406 |
| AgeI | ACCGGT | 1 cut(s) | 429 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AjiI | CACGTC | 1 cut(s) | 637 |
| AjnI | CCWGG | 4 cut(s) | 258, 405, 543, 732 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 91, 666, 750 |
| AluI | AGCT | 3 cut(s) | 91, 666, 750 |
| AlwI | GGATC | 3 cut(s) | 14, 43, 88 |
| Ama87I | CYCGRG | 1 cut(s) | 145 |
| AoxI | GGCC | 8 cut(s) | 63, 148, 165, 182, 203, 265, 735, 806 |
| ApaI | GGGCCC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 1 cut(s) | 192 |
| ApoI | RAATTY | 2 cut(s) | 83, 552 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 222, 254 |
| AsiGI | ACCGGT | 1 cut(s) | 429 |
| AspLEI | GCGC | 5 cut(s) | 324, 364, 466, 527, 654 |
| AspS9I | GGNCC | 9 cut(s) | 63, 64, 148, 223, 265, 432, 682, 709, 806 |
| AsuC2I | CCSGG | 7 cut(s) | 53, 146, 147, 164, 454, 686, 713 |
| AsuHPI | GGTGA | 2 cut(s) | 262, 514 |
| AvaI | CYCGRG | 1 cut(s) | 145 |
| AvaII | GGWCC | 4 cut(s) | 223, 432, 682, 709 |
| BaeGI | GKGCMC | 1 cut(s) | 67 |
| BanII | GRGCYC | 2 cut(s) | 67, 486 |
| BauI | CACGAG | 1 cut(s) | 178 |
| BbvCI | CCTCAGC | 1 cut(s) | 248 |
| BbvI | GCAGC | 1 cut(s) | 204 |
| BccI | CCATC | 2 cut(s) | 50, 395 |
| BceAI | ACGGC | 4 cut(s) | 22, 152, 190, 688 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 400, 434 |
| BciT130I | CCWGG | 4 cut(s) | 260, 407, 545, 734 |
| BcnI | CCSGG | 7 cut(s) | 53, 146, 147, 164, 454, 686, 713 |
| BfaI | CTAG | 1 cut(s) | 693 |
| BfmI | CTRYAG | 1 cut(s) | 217 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 408 |
| BisI | GCNGC | 7 cut(s) | 10, 13, 193, 289, 310, 403, 462 |
| BlsI | GCNGC | 7 cut(s) | 11, 14, 194, 290, 311, 404, 463 |
| Bme18I | GGWCC | 4 cut(s) | 223, 432, 682, 709 |
| BmeT110I | CYCGRG | 1 cut(s) | 145 |
| BmgBI | CACGTC | 1 cut(s) | 637 |
| BmgT120I | GGNCC | 9 cut(s) | 63, 64, 148, 223, 265, 432, 682, 709, 806 |
| BmiI | GGNNCC | 3 cut(s) | 65, 224, 313 |
| BmrI | ACTGGG | 1 cut(s) | 570 |
| BmsI | GCATC | 2 cut(s) | 420, 639 |
| BmuI | ACTGGG | 1 cut(s) | 570 |
| BpmI | CTGGAG | 1 cut(s) | 843 |
| Bpu10I | CCTNAGC | 2 cut(s) | 248, 810 |
| BpuMI | CCSGG | 7 cut(s) | 53, 146, 147, 164, 454, 686, 713 |
| BsaBI | GATNNNNATC | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 2 cut(s) | 111, 243 |
| BsaJI | CCNNGG | 6 cut(s) | 129, 145, 168, 286, 304, 406 |
| BsaWI | WCCGGW | 1 cut(s) | 429 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 169, 259, 305, 406 |
| Bse118I | RCCGGY | 2 cut(s) | 429, 737 |
| Bse1I | ACTGG | 1 cut(s) | 576 |
| Bse8I | GATNNNNATC | 1 cut(s) | 24 |
| BseBI | CCWGG | 4 cut(s) | 260, 407, 545, 734 |
| BseDI | CCNNGG | 6 cut(s) | 129, 145, 168, 286, 304, 406 |
| BseGI | GGATG | 2 cut(s) | 255, 790 |
| BseJI | GATNNNNATC | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 169, 259, 305, 406 |
| BseMII | CTCAG | 2 cut(s) | 262, 801 |
| BseNI | ACTGG | 1 cut(s) | 576 |
| BseRI | GAGGAG | 1 cut(s) | 386 |
| BseSI | GKGCMC | 1 cut(s) | 67 |
| BseX3I | CGGCCG | 2 cut(s) | 165, 203 |
| BseXI | GCAGC | 1 cut(s) | 204 |
| Bsh1236I | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| Bsh1285I | CGRYCG | 4 cut(s) | 168, 206, 424, 720 |
| BshFI | GGCC | 8 cut(s) | 65, 150, 167, 184, 205, 267, 737, 808 |
| BshTI | ACCGGT | 1 cut(s) | 429 |
| BsiEI | CGRYCG | 4 cut(s) | 168, 206, 424, 720 |
| BsiHKCI | CYCGRG | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 169, 259, 305, 406 |
| BsnI | GGCC | 8 cut(s) | 65, 150, 167, 184, 205, 267, 737, 808 |
| BsoBI | CYCGRG | 1 cut(s) | 145 |
| Bsp120I | GGGCCC | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 486 |
| Bsp143I | GATC | 4 cut(s) | 19, 48, 93, 211 |
| Bsp19I | CCATGG | 1 cut(s) | 129 |
| BspANI | GGCC | 8 cut(s) | 65, 150, 167, 184, 205, 267, 737, 808 |
| BspCNI | CTCAG | 2 cut(s) | 261, 802 |
| BspFNI | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| BspLI | GGNNCC | 3 cut(s) | 65, 224, 313 |
| BspPI | GGATC | 3 cut(s) | 14, 43, 88 |
| BsrFI | RCCGGY | 2 cut(s) | 429, 737 |
| BsrI | ACTGG | 1 cut(s) | 576 |
| BssAI | RCCGGY | 2 cut(s) | 429, 737 |
| BssECI | CCNNGG | 6 cut(s) | 129, 145, 168, 286, 304, 406 |
| BssMI | GATC | 4 cut(s) | 19, 48, 93, 211 |
| BssNI | GRCGYC | 2 cut(s) | 111, 243 |
| BssSI | CACGAG | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst2BI | CACGAG | 1 cut(s) | 178 |
| Bst2UI | CCWGG | 4 cut(s) | 260, 407, 545, 734 |
| BstACI | GRCGYC | 2 cut(s) | 111, 243 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 649 |
| BstC8I | GCNNGC | 3 cut(s) | 752, 765, 806 |
| BstDEI | CTNAG | 3 cut(s) | 248, 700, 810 |
| BstDSI | CCRYGG | 3 cut(s) | 129, 168, 286 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 257 |
| BstF5I | GGATG | 2 cut(s) | 255, 790 |
| BstFNI | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| BstHHI | GCGC | 5 cut(s) | 324, 364, 466, 527, 654 |
| BstKTI | GATC | 4 cut(s) | 22, 51, 96, 214 |
| BstMBI | GATC | 4 cut(s) | 19, 48, 93, 211 |
| BstMCI | CGRYCG | 4 cut(s) | 168, 206, 424, 720 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 408, 458, 649, 672, 760, 805 |
| BstNI | CCWGG | 4 cut(s) | 260, 407, 545, 734 |
| BstNSI | RCATGY | 1 cut(s) | 767 |
| BstSFI | CTRYAG | 1 cut(s) | 217 |
| BstSLI | GKGCMC | 1 cut(s) | 67 |
| BstUI | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| BstV1I | GCAGC | 1 cut(s) | 204 |
| BstX2I | RGATCY | 1 cut(s) | 19 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 583 |
| BstYI | RGATCY | 1 cut(s) | 19 |
| BstZI | CGGCCG | 2 cut(s) | 165, 203 |
| BsuRI | GGCC | 8 cut(s) | 65, 150, 167, 184, 205, 267, 737, 808 |
| BtgI | CCRYGG | 3 cut(s) | 129, 168, 286 |
| BtgZI | GCGATG | 1 cut(s) | 373 |
| BtrI | CACGTC | 1 cut(s) | 637 |
| BtsCI | GGATG | 2 cut(s) | 255, 790 |
| BtsIMutI | CAGTG | 1 cut(s) | 583 |
| Cac8I | GCNNGC | 3 cut(s) | 752, 765, 806 |
| CfoI | GCGC | 5 cut(s) | 324, 364, 466, 527, 654 |
| Cfr10I | RCCGGY | 2 cut(s) | 429, 737 |
| Cfr13I | GGNCC | 9 cut(s) | 63, 64, 148, 223, 265, 432, 682, 709, 806 |
| Cfr42I | CCGCGG | 1 cut(s) | 289 |
| Cfr9I | CCCGGG | 1 cut(s) | 145 |
| CpoI | CGGWCCG | 1 cut(s) | 432 |
| CseI | GACGC | 3 cut(s) | 91, 119, 251 |
| CsiI | ACCWGGT | 1 cut(s) | 543 |
| Csp6I | GTAC | 2 cut(s) | 4, 670 |
| CspAI | ACCGGT | 1 cut(s) | 429 |
| CspI | CGGWCCG | 1 cut(s) | 432 |
| CviAII | CATG | 5 cut(s) | 130, 646, 759, 764, 800 |
| CviQI | GTAC | 2 cut(s) | 4, 670 |
| DdeI | CTNAG | 3 cut(s) | 248, 700, 810 |
| DpnI | GATC | 4 cut(s) | 21, 50, 95, 213 |
| DpnII | GATC | 4 cut(s) | 19, 48, 93, 211 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 716 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 716 |
| EaeI | YGGCCR | 2 cut(s) | 165, 203 |
| EagI | CGGCCG | 2 cut(s) | 165, 203 |
| EciI | GGCGGA | 2 cut(s) | 149, 389 |
| EclXI | CGGCCG | 2 cut(s) | 165, 203 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| Eco24I | GRGCYC | 2 cut(s) | 67, 486 |
| Eco47I | GGWCC | 4 cut(s) | 223, 432, 682, 709 |
| Eco52I | CGGCCG | 2 cut(s) | 165, 203 |
| Eco57I | CTGAAG | 1 cut(s) | 328 |
| Eco88I | CYCGRG | 1 cut(s) | 145 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 257 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoRI | GAATTC | 1 cut(s) | 83 |
| EcoRII | CCWGG | 4 cut(s) | 258, 405, 543, 732 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| EcoT38I | GRGCYC | 2 cut(s) | 67, 486 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| FaeI | CATG | 5 cut(s) | 133, 649, 762, 767, 803 |
| FaiI | YATR | 9 cut(s) | 131, 187, 529, 633, 647, 760, 765, 801, 834 |
| FatI | CATG | 5 cut(s) | 129, 645, 758, 763, 799 |
| FauI | CCCGC | 3 cut(s) | 293, 668, 797 |
| FblI | GTMKAC | 2 cut(s) | 240, 444 |
| Fnu4HI | GCNGC | 7 cut(s) | 10, 13, 193, 289, 310, 403, 462 |
| FokI | GGATG | 2 cut(s) | 242, 797 |
| FriOI | GRGCYC | 2 cut(s) | 67, 486 |
| Fsp4HI | GCNGC | 7 cut(s) | 10, 13, 193, 289, 310, 403, 462 |
| FspBI | CTAG | 1 cut(s) | 693 |
| GlaI | GCGC | 5 cut(s) | 323, 363, 465, 526, 653 |
| GluI | GCNGC | 7 cut(s) | 10, 13, 193, 289, 310, 403, 462 |
| GsuI | CTGGAG | 1 cut(s) | 843 |
| HaeIII | GGCC | 8 cut(s) | 65, 150, 167, 184, 205, 267, 737, 808 |
| HgaI | GACGC | 3 cut(s) | 91, 119, 251 |
| HhaI | GCGC | 5 cut(s) | 324, 364, 466, 527, 654 |
| Hin1I | GRCGYC | 2 cut(s) | 111, 243 |
| Hin1II | CATG | 5 cut(s) | 133, 649, 762, 767, 803 |
| Hin6I | GCGC | 5 cut(s) | 322, 362, 464, 525, 652 |
| HinP1I | GCGC | 5 cut(s) | 322, 362, 464, 525, 652 |
| HincII | GTYRAC | 2 cut(s) | 241, 445 |
| HindII | GTYRAC | 2 cut(s) | 241, 445 |
| HinfI | GANTC | 6 cut(s) | 25, 77, 281, 383, 446, 497 |
| HphI | GGTGA | 2 cut(s) | 262, 514 |
| Hpy166II | GTNNAC | 4 cut(s) | 172, 241, 445, 709 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 74, 97, 380 |
| Hpy8I | GTNNAC | 4 cut(s) | 172, 241, 445, 709 |
| Hpy99I | CGWCG | 4 cut(s) | 113, 242, 245, 359 |
| HpyAV | CCTTC | 1 cut(s) | 431 |
| HpyCH4IV | ACGT | 4 cut(s) | 237, 357, 515, 636 |
| HpyCH4V | TGCA | 2 cut(s) | 492, 799 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 408, 458, 649, 672, 760, 805 |
| HpyF3I | CTNAG | 3 cut(s) | 248, 700, 810 |
| HpySE526I | ACGT | 4 cut(s) | 237, 357, 515, 636 |
| Hsp92I | GRCGYC | 2 cut(s) | 111, 243 |
| Hsp92II | CATG | 5 cut(s) | 133, 649, 762, 767, 803 |
| HspAI | GCGC | 5 cut(s) | 322, 362, 464, 525, 652 |
| KspI | CCGCGG | 1 cut(s) | 289 |
| Kzo9I | GATC | 4 cut(s) | 19, 48, 93, 211 |
| LmnI | GCTCC | 2 cut(s) | 317, 382 |
| Lsp1109I | GCAGC | 1 cut(s) | 204 |
| LweI | GCATC | 2 cut(s) | 420, 639 |
| MabI | ACCWGGT | 1 cut(s) | 543 |
| MaeI | CTAG | 1 cut(s) | 693 |
| MaeII | ACGT | 4 cut(s) | 237, 357, 515, 636 |
| MaeIII | GTNAC | 2 cut(s) | 365, 511 |
| MalI | GATC | 4 cut(s) | 21, 50, 95, 213 |
| MboI | GATC | 4 cut(s) | 19, 48, 93, 211 |
| MboII | GAAGA | 3 cut(s) | 29, 148, 787 |
| MflI | RGATCY | 1 cut(s) | 19 |
| MhlI | GDGCHC | 2 cut(s) | 67, 486 |
| MluCI | AATT | 2 cut(s) | 83, 552 |
| MlyI | GAGTC | 4 cut(s) | 275, 377, 440, 491 |
| MmeI | TCCRAC | 4 cut(s) | 303, 660, 700, 819 |
| MslI | CAYNNNNRTG | 2 cut(s) | 128, 260 |
| MspA1I | CMGCKG | 1 cut(s) | 288 |
| MvaI | CCWGG | 4 cut(s) | 260, 407, 545, 734 |
| MvnI | CGCG | 4 cut(s) | 288, 322, 364, 464 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 408, 458, 649, 672, 760, 805 |
| NciI | CCSGG | 7 cut(s) | 53, 146, 147, 164, 454, 686, 713 |
| NcoI | CCATGG | 1 cut(s) | 129 |
| NdeII | GATC | 4 cut(s) | 19, 48, 93, 211 |
| NlaIII | CATG | 5 cut(s) | 133, 649, 762, 767, 803 |
| NlaIV | GGNNCC | 3 cut(s) | 65, 224, 313 |
| NmeAIII | GCCGAG | 1 cut(s) | 285 |
| NmuCI | GTSAC | 2 cut(s) | 365, 511 |
| NspI | RCATGY | 1 cut(s) | 767 |
| PaeI | GCATGC | 1 cut(s) | 767 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 12, 492 |
| PfeI | GAWTC | 2 cut(s) | 25, 77 |
| PfoI | TCCNGGA | 1 cut(s) | 51 |
| PinAI | ACCGGT | 1 cut(s) | 429 |
| PkrI | GCNGC | 7 cut(s) | 11, 14, 194, 290, 311, 404, 463 |
| PleI | GAGTC | 4 cut(s) | 275, 377, 440, 491 |
| PpsI | GAGTC | 4 cut(s) | 275, 377, 440, 491 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| Psp6I | CCWGG | 4 cut(s) | 258, 405, 543, 732 |
| PspGI | CCWGG | 4 cut(s) | 258, 405, 543, 732 |
| PspN4I | GGNNCC | 3 cut(s) | 65, 224, 313 |
| PspOMI | GGGCCC | 1 cut(s) | 63 |
| PspPI | GGNCC | 9 cut(s) | 63, 64, 148, 223, 265, 432, 682, 709, 806 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| PsuI | RGATCY | 1 cut(s) | 19 |
| RsaI | GTAC | 2 cut(s) | 5, 671 |
| RsaNI | GTAC | 2 cut(s) | 4, 670 |
| RseI | CAYNNNNRTG | 2 cut(s) | 128, 260 |
| Rsr2I | CGGWCCG | 1 cut(s) | 432 |
| RsrII | CGGWCCG | 1 cut(s) | 432 |
| SacII | CCGCGG | 1 cut(s) | 289 |
| SalI | GTCGAC | 2 cut(s) | 239, 443 |
| SatI | GCNGC | 7 cut(s) | 10, 13, 193, 289, 310, 403, 462 |
| Sau3AI | GATC | 4 cut(s) | 19, 48, 93, 211 |
| Sau96I | GGNCC | 9 cut(s) | 63, 64, 148, 223, 265, 432, 682, 709, 806 |
| SchI | GAGTC | 4 cut(s) | 275, 377, 440, 491 |
| SduI | GDGCHC | 2 cut(s) | 67, 486 |
| SexAI | ACCWGGT | 1 cut(s) | 543 |
| SfaNI | GCATC | 2 cut(s) | 420, 639 |
| SfcI | CTRYAG | 1 cut(s) | 217 |
| Sfr303I | CCGCGG | 1 cut(s) | 289 |
| SgrBI | CCGCGG | 1 cut(s) | 289 |
| SgrDI | CGTCGACG | 1 cut(s) | 239 |
| SinI | GGWCC | 4 cut(s) | 223, 432, 682, 709 |
| SmaI | CCCGGG | 1 cut(s) | 147 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 128, 260 |
| SphI | GCATGC | 1 cut(s) | 767 |
| Sse9I | AATT | 2 cut(s) | 83, 552 |
| SspMI | CTAG | 1 cut(s) | 693 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaiI | ACGT | 4 cut(s) | 240, 360, 518, 639 |
| TaqI | TCGA | 9 cut(s) | 75, 87, 108, 240, 354, 414, 420, 444, 588 |
| TasI | AATT | 2 cut(s) | 83, 552 |
| TauI | GCSGC | 6 cut(s) | 12, 15, 291, 312, 405, 464 |
| TfiI | GAWTC | 2 cut(s) | 25, 77 |
| TscAI | CASTG | 1 cut(s) | 583 |
| TseFI | GTSAC | 2 cut(s) | 365, 511 |
| TseI | GCWGC | 1 cut(s) | 192 |
| Tsp45I | GTSAC | 2 cut(s) | 365, 511 |
| TspDTI | ATGAA | 2 cut(s) | 112, 316 |
| TspMI | CCCGGG | 1 cut(s) | 145 |
| TspRI | CASTG | 1 cut(s) | 583 |
| VpaK11BI | GGWCC | 4 cut(s) | 223, 432, 682, 709 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 257 |
| XapI | RAATTY | 2 cut(s) | 83, 552 |
| XceI | RCATGY | 1 cut(s) | 767 |
| XmaI | CCCGGG | 1 cut(s) | 145 |
| XmiI | GTMKAC | 2 cut(s) | 240, 444 |
| XspI | CTAG | 1 cut(s) | 693 |