Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003980

Physical Location & Seq

Genomic Coordinates Reverse (-)

24665565 .. 24665894

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTCAGACCAAAGCCCAGTACCAATCTCCTCTACGCGACAGTTGCACGCACAGCTGCCTCATCACTTCCTATCGATCAAGGCCCACGACCATGCCGGCATGACCGTGCCGCCACTCCTGCGCCGCATGATTTGCACCGTCATGCTCATCGTCATCACGACCTGCCAGATCCAAATCCCGTCGCCGACGAGTCTAGGATACCAGCTCCGAAGCTCGACCACCGTACACCACAGCCACCGCACCTTAGAGGTTCAGTGCCAAGAACTCCGCCTCAAACCATGCCGAAAGGTAGAGCAGCAACCCTCCCACGGAAACTTGCCGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000289 GO:0000291 GO:0000932 GO:0000956 GO:0002213 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

109

Amino Acids

12.07

Weight (kDa)

11.08

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44260 AT5G22250
fragaria_vesca	FvH4_3g25960 FvH4_6g19860
malus_domestica	MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1
prunus_persica	Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1
pyrus_communis	pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120
rosa_chinensis	RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241
rosa_laevigata	RLG00000023855 RLG00000034481
rosa_roxburghii	Rroxscaffold_1G00034130 Rroxscaffold_6G00406420
rosa_rugosa	Rorug03G0147600 Rorug05G0235200
rosa_samantha	Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600
rosa_wichuraiana	Rw3G017960 Rw5G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	111, 125, 239, 269
AclWI	GGATC	1 cut(s)	164
AfaI	GTAC	2 cut(s)	22, 226
AfiI	CCNNNNNNNGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	56, 206, 214
AluI	AGCT	3 cut(s)	56, 206, 214
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	56, 296
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	43, 308
BciVI	GTATCC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	57, 111, 125, 297
BlsI	GCNGC	4 cut(s)	58, 112, 126, 298
BmgT120I	GGNCC	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	308
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	43, 308
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	309
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	76, 169
BspACI	CCGC	4 cut(s)	111, 125, 239, 269
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	38
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	76, 169
Bst4CI	ACNGT	4 cut(s)	43, 107, 140, 224
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	49, 98
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	2 cut(s)	79, 172
BstMBI	GATC	2 cut(s)	76, 169
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 119, 133
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	43, 308
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	49, 98
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	21, 225
CviAII	CATG	5 cut(s)	93, 101, 128, 143, 280
CviJI	RGCY	7 cut(s)	16, 56, 84, 206, 214, 235, 325
CviKI_1	RGCY	7 cut(s)	16, 56, 84, 206, 214, 235, 325
CviQI	GTAC	2 cut(s)	21, 225
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	78, 171
DpnII	GATC	2 cut(s)	76, 169
EciI	GGCGGA	1 cut(s)	258
FaeI	CATG	5 cut(s)	96, 104, 131, 146, 283
FaiI	YATR	6 cut(s)	94, 102, 129, 144, 281, 328
FatI	CATG	5 cut(s)	92, 100, 127, 142, 279
Fnu4HI	GCNGC	4 cut(s)	57, 111, 125, 297
Fsp4HI	GCNGC	4 cut(s)	57, 111, 125, 297
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	57, 111, 125, 297
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	5 cut(s)	96, 104, 131, 146, 283
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	8, 210
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	2 cut(s)	185, 191
HpyCH4III	ACNGT	4 cut(s)	43, 107, 140, 224
HpyCH4V	TGCA	2 cut(s)	47, 136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 119, 133
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	5 cut(s)	96, 104, 131, 146, 283
HspAI	GCGC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	76, 169
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	6 cut(s)	31, 110, 132, 176, 180, 216
Lsp1109I	GCAGC	2 cut(s)	43, 308
MaeI	CTAG	1 cut(s)	195
MalI	GATC	2 cut(s)	78, 171
MboI	GATC	2 cut(s)	76, 169
MflI	RGATCY	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	41, 70, 242, 282, 314
MroNI	GCCGGC	1 cut(s)	96
MslI	CAYNNNNRTG	3 cut(s)	91, 105, 141
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 119, 133
NaeI	GCCGGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	76, 169
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	5 cut(s)	96, 104, 131, 146, 283
PdiI	GCCGGC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	58, 112, 126, 298
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	22, 226
RsaNI	GTAC	2 cut(s)	21, 225
RseI	CAYNNNNRTG	3 cut(s)	91, 105, 141
SatI	GCNGC	4 cut(s)	57, 111, 125, 297
Sau3AI	GATC	2 cut(s)	76, 169
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	200
SetI	ASST	7 cut(s)	58, 165, 208, 216, 246, 253, 292
SmiMI	CAYNNNNRTG	3 cut(s)	91, 105, 141
SsiI	CCGC	4 cut(s)	111, 125, 239, 269
SspMI	CTAG	1 cut(s)	195
TaaI	ACNGT	4 cut(s)	43, 107, 140, 224
TaqI	TCGA	2 cut(s)	75, 216
TauI	GCSGC	2 cut(s)	113, 127
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	56, 296
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	261
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.