pycom11g14510

CCR4-associated factor 1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
14523355 .. 14524968
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14510.2

Sequence Viewer

Length: 1182 bp
ATGTGCCGCCGCAAAGTAAGTTCAACTTCGAGTTCCAAGTCGAAGCCGATCGCAATCCGACAAGTGTGGGCCCACAATCTAGAATCTGAGTTCGAACTAATTCGCCAAGTTATCGACGACTGCCCCTTTATTTCGATGGACACAGAATTCCCCGGACTAATATATCGACAGCCGTACAAACACGATACACAGCCGACCGATCACTACAAAAACCTCAAATCCAACGTTGACGATCTCAACCTCATCCAGGTGGGCCTCACCCTCACCGACTCCGGTGGCAACCTCCCCGACCTCGGCTCCCCGACGCCCTACATCTGGGAATTCAACTTCAACGACTTCGACATCGCCCGGGACCGCCACGCTTCAGACTCCATCCAGCTCCTCCGCCGCCAGGGAATCGACTTCGACCGCAACCTCTCCGACGGCATCGCGTCGGCCCGGTTCGCAGAGTTGATGATGTCGTCGGGACTCGTCTGCAACGACTCAGTGAGTTGGGTGGCGTTCCACGGCGCGTACGACTTTGGGTACTTGGTGAAGATCCTCACGGGCCAGAAGGAATTGCCGAGTGGCATGGAAGAGTTTTTGAGGATTGTGAGGGTGTTTTTCGGAAATAGAATTTATGACGTCAAGTACATGATTCGGTTCTGTAACAGCTTGTACGGAGGGCTGGACCAGGTGGCGAAGATTTTAAAGTTGGACCGGGCAGCCGGTAAGTGCCACCAGGCCGGTTCAGATAGCTTGCTGACGTGGCATGCGTTTCAGAAAATTATGGATGTGTATTTTATGAATGATGGCCCCGAGAAGCACGCGGGAGTCTTGTATGGATTAGAAACCACTGCAGTGTGCCAATGGTGGTATCAAAATTTAAAACCAGGTTCCACTCCCCAAGGTGGTGCCCAGATCAAAACCACATTTGACCCATTGGAAAGTGAAAATAACATGCCCATTCAACCCTTTCGTTTCTTCTTCTTCATTAGCGCTTTCAGAAGCTCAAAGCTAAATCTGCAAGACTGCAACTTGAGCCCGCCAAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCTCATATGCTTATAGATGGCAAGCTTCAGAAGCTCGCCGAGGCTCTGCTTTTACATATAACATTGAAAGTTGCAGATTTGTTGAGAGAGTTACAGCGATTTTGGGATTTGTAG

Protein Analysis

394

Amino Acids

44.78

Weight (kDa)

6.37

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 893
AccII CGCG 3 cut(s) 431, 512, 809
AciI CCGC 8 cut(s) 7, 10, 355, 385, 388, 409, 809, 1025
AclI AACGTT 1 cut(s) 225
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 4 cut(s) 146, 320, 615, 862
AcuI CTGAAG 2 cut(s) 348, 1079
AcyI GRCGYC 2 cut(s) 305, 624
AfaI GTAC 5 cut(s) 176, 515, 527, 632, 659
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 5 cut(s) 247, 293, 315, 391, 890
AgsI TTSAA 5 cut(s) 24, 325, 331, 950, 1135
AjiI CACGTC 1 cut(s) 747
AjnI CCWGG 5 cut(s) 246, 390, 672, 720, 871
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 7 cut(s) 379, 654, 738, 990, 997, 1093, 1102
AluI AGCT 7 cut(s) 379, 654, 738, 990, 997, 1093, 1102
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 2 cut(s) 348, 797
Aor51HI AGCGCT 1 cut(s) 979
AoxI GGCC 6 cut(s) 69, 253, 435, 547, 723, 793
ApaI GGGCCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 4 cut(s) 146, 320, 615, 862
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 512, 980
AspS9I GGNCC 9 cut(s) 69, 70, 253, 352, 436, 547, 670, 697, 794
AsuC2I CCSGG 5 cut(s) 153, 349, 350, 439, 701
AsuHPI GGTGA 3 cut(s) 250, 256, 544
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 2 cut(s) 348, 797
AvaII GGWCC 3 cut(s) 352, 670, 697
BaeGI GKGCMC 2 cut(s) 73, 898
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 2 cut(s) 73, 1025
BbvI GCAGC 1 cut(s) 716
BccI CCATC 4 cut(s) 130, 380, 785, 1079
BceAI ACGGC 3 cut(s) 157, 439, 523
BciT130I CCWGG 5 cut(s) 248, 392, 674, 722, 873
BcnI CCSGG 5 cut(s) 153, 349, 350, 439, 701
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 981
BisI GCNGC 4 cut(s) 7, 10, 388, 705
BlsI GCNGC 4 cut(s) 8, 11, 389, 706
Bme18I GGWCC 3 cut(s) 352, 670, 697
BmeT110I CYCGRG 2 cut(s) 348, 797
BmgBI CACGTC 1 cut(s) 747
BmgT120I GGNCC 9 cut(s) 69, 70, 253, 352, 436, 547, 670, 697, 794
BmiI GGNNCC 6 cut(s) 71, 298, 353, 796, 877, 895
BmsI GCATC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 1039
BpuMI CCSGG 5 cut(s) 153, 349, 350, 439, 701
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 2 cut(s) 305, 624
BsaJI CCNNGG 8 cut(s) 151, 292, 348, 391, 505, 886, 1028, 1107
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 293, 315, 391, 890
Bse118I RCCGGY 2 cut(s) 707, 725
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 5 cut(s) 248, 392, 674, 722, 873
BseDI CCNNGG 8 cut(s) 151, 292, 348, 391, 505, 886, 1028, 1107
BseGI GGATG 3 cut(s) 243, 372, 778
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 5 cut(s) 247, 293, 315, 391, 890
BseMII CTCAG 2 cut(s) 78, 498
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 2 cut(s) 73, 898
BseXI GCAGC 1 cut(s) 716
Bsh1236I CGCG 3 cut(s) 431, 512, 809
Bsh1285I CGRYCG 3 cut(s) 51, 198, 409
BshFI GGCC 6 cut(s) 71, 255, 437, 549, 725, 795
BshNI GGYRCC 1 cut(s) 893
BsiEI CGRYCG 3 cut(s) 51, 198, 409
BsiHKCI CYCGRG 2 cut(s) 348, 797
BsiSI CCGG 7 cut(s) 153, 273, 349, 439, 700, 708, 726
BsiWI CGTACG 1 cut(s) 513
BslFI GGGAC 2 cut(s) 365, 480
BslI CCNNNNNNNGG 5 cut(s) 247, 293, 315, 391, 890
BsmFI GGGAC 2 cut(s) 365, 480
BsnI GGCC 6 cut(s) 71, 255, 437, 549, 725, 795
BsoBI CYCGRG 2 cut(s) 348, 797
Bsp119I TTCGAA 1 cut(s) 93
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 3 cut(s) 73, 898, 1025
Bsp143I GATC 5 cut(s) 48, 199, 232, 537, 900
BspACI CCGC 8 cut(s) 7, 10, 355, 385, 388, 409, 809, 1025
BspANI GGCC 6 cut(s) 71, 255, 437, 549, 725, 795
BspCNI CTCAG 2 cut(s) 79, 497
BspFNI CGCG 3 cut(s) 431, 512, 809
BspLI GGNNCC 6 cut(s) 71, 298, 353, 796, 877, 895
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 1 cut(s) 532
BspT104I TTCGAA 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 893
BsrFI RCCGGY 2 cut(s) 707, 725
BssAI RCCGGY 2 cut(s) 707, 725
BssECI CCNNGG 8 cut(s) 151, 292, 348, 391, 505, 886, 1028, 1107
BssMI GATC 5 cut(s) 48, 199, 232, 537, 900
BssNI GRCGYC 2 cut(s) 305, 624
BssT1I CCWWGG 2 cut(s) 886, 1028
Bst2UI CCWGG 5 cut(s) 248, 392, 674, 722, 873
Bst6I CTCTTC 2 cut(s) 570, 1070
BstACI GRCGYC 2 cut(s) 305, 624
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 6 cut(s) 740, 753, 807, 1025, 1091, 1104
BstDEI CTNAG 2 cut(s) 87, 484
BstDSI CCRYGG 1 cut(s) 505
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 243, 372, 778
BstFNI CGCG 3 cut(s) 431, 512, 809
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 2 cut(s) 512, 980
BstKTI GATC 5 cut(s) 51, 202, 235, 540, 903
BstMBI GATC 5 cut(s) 48, 199, 232, 537, 900
BstMCI CGRYCG 3 cut(s) 51, 198, 409
BstMWI GCNNNNNNNGC 5 cut(s) 443, 748, 1003, 1020, 1099
BstNI CCWGG 5 cut(s) 248, 392, 674, 722, 873
BstNSI RCATGY 2 cut(s) 755, 943
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 2 cut(s) 73, 898
BstUI CGCG 3 cut(s) 431, 512, 809
BstV1I GCAGC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BsuRI GGCC 6 cut(s) 71, 255, 437, 549, 725, 795
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 2 cut(s) 328, 412
BtrI CACGTC 1 cut(s) 747
BtsCI GGATG 3 cut(s) 243, 372, 778
BtsI GCAGTG 2 cut(s) 834, 846
BtsIMutI CAGTG 3 cut(s) 492, 834, 846
Cac8I GCNNGC 6 cut(s) 740, 753, 807, 1025, 1091, 1104
CfoI GCGC 2 cut(s) 512, 980
Cfr10I RCCGGY 2 cut(s) 707, 725
Cfr13I GGNCC 9 cut(s) 69, 70, 253, 352, 436, 547, 670, 697, 794
Cfr9I CCCGGG 1 cut(s) 348
CseI GACGC 2 cut(s) 313, 420
CsiI ACCWGGT 2 cut(s) 672, 871
Csp6I GTAC 5 cut(s) 175, 514, 526, 631, 658
CviAII CATG 4 cut(s) 571, 634, 752, 940
CviQI GTAC 5 cut(s) 175, 514, 526, 631, 658
DdeI CTNAG 2 cut(s) 87, 484
DpnI GATC 5 cut(s) 50, 201, 234, 539, 902
DpnII GATC 5 cut(s) 48, 199, 232, 537, 900
DraI TTTAAA 2 cut(s) 690, 867
Eam1104I CTCTTC 2 cut(s) 570, 1070
EarI CTCTTC 2 cut(s) 570, 1070
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 886, 1028
Eco24I GRGCYC 2 cut(s) 73, 1025
Eco47I GGWCC 3 cut(s) 352, 670, 697
Eco47III AGCGCT 1 cut(s) 979
Eco57I CTGAAG 2 cut(s) 348, 1079
Eco88I CYCGRG 2 cut(s) 348, 797
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoRI GAATTC 2 cut(s) 146, 320
EcoRII CCWGG 5 cut(s) 246, 390, 672, 720, 871
EcoT14I CCWWGG 2 cut(s) 886, 1028
EcoT38I GRGCYC 2 cut(s) 73, 1025
ErhI CCWWGG 2 cut(s) 886, 1028
FaeI CATG 4 cut(s) 574, 637, 755, 943
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 365, 480
FatI CATG 4 cut(s) 570, 633, 751, 939
FauI CCCGC 2 cut(s) 802, 1032
FauNDI CATATG 1 cut(s) 1074
Fnu4HI GCNGC 4 cut(s) 7, 10, 388, 705
FokI GGATG 3 cut(s) 230, 359, 785
FriOI GRGCYC 2 cut(s) 73, 1025
Fsp4HI GCNGC 4 cut(s) 7, 10, 388, 705
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 511, 979
GluI GCNGC 4 cut(s) 7, 10, 388, 705
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 6 cut(s) 71, 255, 437, 549, 725, 795
HapII CCGG 7 cut(s) 153, 273, 349, 439, 700, 708, 726
HgaI GACGC 2 cut(s) 313, 420
HhaI GCGC 2 cut(s) 512, 980
Hin1I GRCGYC 2 cut(s) 305, 624
Hin1II CATG 4 cut(s) 574, 637, 755, 943
Hin6I GCGC 2 cut(s) 510, 978
HinP1I GCGC 2 cut(s) 510, 978
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 8 cut(s) 83, 269, 368, 396, 468, 482, 637, 813
HpaII CCGG 7 cut(s) 153, 273, 349, 439, 700, 708, 726
HphI GGTGA 3 cut(s) 250, 256, 544
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 9 cut(s) 59, 88, 367, 421, 608, 733, 762, 986, 1098
Hpy188III TCNNGA 2 cut(s) 80, 465
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 5 cut(s) 119, 307, 425, 436, 466
HpyAV CCTTC 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 225, 624, 746
HpyCH4V TGCA 5 cut(s) 477, 839, 1006, 1014, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 748, 1003, 1020, 1099
HpyF3I CTNAG 2 cut(s) 87, 484
HpySE526I ACGT 3 cut(s) 225, 624, 746
Hsp92I GRCGYC 2 cut(s) 305, 624
Hsp92II CATG 4 cut(s) 574, 637, 755, 943
HspAI GCGC 2 cut(s) 510, 978
Kzo9I GATC 5 cut(s) 48, 199, 232, 537, 900
LmnI GCTCC 2 cut(s) 302, 384
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 1 cut(s) 435
MabI ACCWGGT 2 cut(s) 672, 871
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 225, 624, 746
MaeIII GTNAC 2 cut(s) 647, 1158
MalI GATC 5 cut(s) 50, 201, 234, 539, 902
MboI GATC 5 cut(s) 48, 199, 232, 537, 900
MboII GAAGA 7 cut(s) 547, 587, 694, 955, 958, 961, 1057
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 3 cut(s) 73, 898, 1025
MluCI AATT 7 cut(s) 99, 146, 320, 557, 615, 765, 862
MlyI GAGTC 5 cut(s) 263, 362, 462, 476, 822
MmeI TCCRAC 4 cut(s) 82, 246, 444, 675
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 689, 866
MslI CAYNNNNRTG 2 cut(s) 248, 839
MspI CCGG 7 cut(s) 153, 273, 349, 439, 700, 708, 726
MvaI CCWGG 5 cut(s) 248, 392, 674, 722, 873
MvnI CGCG 3 cut(s) 431, 512, 809
MwoI GCNNNNNNNGC 5 cut(s) 443, 748, 1003, 1020, 1099
NciI CCSGG 5 cut(s) 153, 349, 350, 439, 701
NdeI CATATG 1 cut(s) 1074
NdeII GATC 5 cut(s) 48, 199, 232, 537, 900
NlaIII CATG 4 cut(s) 574, 637, 755, 943
NlaIV GGNNCC 6 cut(s) 71, 298, 353, 796, 877, 895
NmeAIII GCCGAG 3 cut(s) 273, 588, 1132
NspI RCATGY 2 cut(s) 755, 943
NspV TTCGAA 1 cut(s) 93
OliI CACNNNNGTG 1 cut(s) 839
PaeI GCATGC 1 cut(s) 755
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 513, 752
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 83, 396, 637
Pfl23II CGTACG 1 cut(s) 513
PkrI GCNGC 4 cut(s) 8, 11, 389, 706
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 5 cut(s) 263, 362, 462, 476, 821
PpsI GAGTC 5 cut(s) 263, 362, 462, 476, 821
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 5 cut(s) 246, 390, 672, 720, 871
PspGI CCWGG 5 cut(s) 246, 390, 672, 720, 871
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 6 cut(s) 71, 298, 353, 796, 877, 895
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 9 cut(s) 69, 70, 253, 352, 436, 547, 670, 697, 794
PstI CTGCAG 1 cut(s) 841
PsuI RGATCY 1 cut(s) 537
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 5 cut(s) 176, 515, 527, 632, 659
RsaNI GTAC 5 cut(s) 175, 514, 526, 631, 658
RseI CAYNNNNRTG 2 cut(s) 248, 839
SaqAI TTAA 2 cut(s) 689, 866
SatI GCNGC 4 cut(s) 7, 10, 388, 705
Sau3AI GATC 5 cut(s) 48, 199, 232, 537, 900
Sau96I GGNCC 9 cut(s) 69, 70, 253, 352, 436, 547, 670, 697, 794
SchI GAGTC 5 cut(s) 263, 362, 462, 476, 822
SduI GDGCHC 3 cut(s) 73, 898, 1025
SexAI ACCWGGT 2 cut(s) 672, 871
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 93
SinI GGWCC 3 cut(s) 352, 670, 697
SmaI CCCGGG 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 248, 839
SmlI CTYRAG 1 cut(s) 1018
SmoI CTYRAG 1 cut(s) 1018
SphI GCATGC 1 cut(s) 755
Sse9I AATT 7 cut(s) 99, 146, 320, 557, 615, 765, 862
SsiI CCGC 8 cut(s) 7, 10, 355, 385, 388, 409, 809, 1025
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 2 cut(s) 886, 1028
TaiI ACGT 3 cut(s) 228, 627, 749
TaqI TCGA 9 cut(s) 29, 41, 93, 114, 134, 166, 339, 399, 405
TaqII GACCGA 1 cut(s) 212
TasI AATT 7 cut(s) 99, 146, 320, 557, 615, 765, 862
TatI WGTACW 1 cut(s) 630
TauI GCSGC 3 cut(s) 9, 12, 390
TfiI GAWTC 3 cut(s) 83, 396, 637
Tru1I TTAA 2 cut(s) 689, 866
Tru9I TTAA 2 cut(s) 689, 866
TscAI CASTG 3 cut(s) 492, 841, 846
TseI GCWGC 1 cut(s) 704
TspDTI ATGAA 2 cut(s) 800, 961
TspGWI ACGGA 1 cut(s) 675
TspMI CCCGGG 1 cut(s) 348
TspRI CASTG 3 cut(s) 492, 841, 846
VpaK11BI GGWCC 3 cut(s) 352, 670, 697
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 4 cut(s) 146, 320, 615, 862
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 2 cut(s) 755, 943
XmaI CCCGGG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 80
ZraI GACGTC 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.