RLG00000023855

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
29203980 .. 29204834
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023855

Sequence Viewer

Length: 855 bp
ATGTCGTCGTCGTCCTCCTCCTCATCAGAACCCCCGCCGCCTTCTTCAGAAATCCGAATCCGATCGGTATGGGCCGATAACCTCGACGACGAGTTCGACAAGATCCGATCCGTGATCGACGAATTCCCGATGATCTCCATGGACACGGAGTTTCCCGGCGTCGTTTTCCGGCCCAACGCCGAGGATCCGAATTTCCGGCACCTGGATCGCCCCGACGCGAACTATCTAGTTCTCAAGGCGAACGTGGACCGGCTGAATCTGATCCAGGTCGGGCTGACTCTCTCGGACCGCGGCGGGAATTTGCCGGATTTAGGATCGGAGAACAAGTATATTTGGGAATTCAATTTCAGAGACTTCGACGTGGGGCGTGACCCCCACGCGCACGACTCCATCGAGTTGCTGCGGCGGCAGGGTATCGATTTCGAGCGCAACCGGGACAGAGGGATCGACTCGTACAAATTCGCCCAGCTGATGATGTCATCGGGCCTCGTGTGCAACGAGGACGTGACGTGGATCACGTTTCACAGCGCGTACGATTTCGGATACCTGGTCAAGGTGTTGACGCAGCAAGCGTTGCCGGAGGAGCTGCCGGGATTCTTGAACCTGGTGAAGGTGTTCTTTGGTTCCGGAGGGTACGACGTGAAGCACCTGACCAAGTTCTGTGCTCATCTCTATGGTGGATTGGACCGGGTTTGCCAGGCCTTAAATGTGGGCCGGGCCATTGGAAAAAGCCACCAGGCCGGGTCGGATAGCCTCCTGACTTTGCATGCGTACCAGAGGATCAAAGAGCTCTTCTTCAGCAAAGATGGAATAGAGCAGTACGCTGGCGTTTTGTATGGTCTAGAGGTTTCTTGA

Protein Analysis

285

Amino Acids

32.07

Weight (kDa)

5.1

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 23 - 149 2.2e-10 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 4 cut(s) 218, 291, 380, 530
AccIII TCCGGA 1 cut(s) 626
AciI CCGC 7 cut(s) 35, 38, 289, 291, 294, 403, 406
AcsI RAATTY 5 cut(s) 122, 190, 298, 338, 458
AcuI CTGAAG 2 cut(s) 30, 781
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 5 cut(s) 455, 533, 635, 773, 821
AfiI CCNNNNNNNGG 4 cut(s) 202, 311, 553, 610
AgsI TTSAA 2 cut(s) 343, 601
AjiI CACGTC 4 cut(s) 361, 505, 510, 640
AjnI CCWGG 6 cut(s) 201, 264, 546, 603, 696, 735
AluBI AGCT 3 cut(s) 469, 586, 790
AluI AGCT 3 cut(s) 469, 586, 790
Alw21I GWGCWC 2 cut(s) 667, 792
Alw26I GTCTC 1 cut(s) 345
Aor13HI TCCGGA 1 cut(s) 626
AoxI GGCC 7 cut(s) 72, 170, 484, 699, 712, 717, 738
ApeKI GCWGC 3 cut(s) 400, 565, 586
ApoI RAATTY 5 cut(s) 122, 190, 298, 338, 458
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 614
AspLEI GCGC 3 cut(s) 382, 429, 530
AspS9I GGNCC 8 cut(s) 72, 171, 247, 286, 484, 685, 712, 717
AsuC2I CCSGG 6 cut(s) 156, 434, 591, 689, 716, 742
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 3 cut(s) 247, 286, 685
BamHI GGATCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 792
BauI CACGAG 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 667, 792
BbvI GCAGC 3 cut(s) 387, 573, 577
BccI CCATC 2 cut(s) 398, 800
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 6 cut(s) 203, 266, 548, 605, 698, 737
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 6 cut(s) 156, 434, 591, 689, 716, 742
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 227, 842
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 7 cut(s) 38, 292, 401, 404, 407, 566, 587
BlsI GCNGC 7 cut(s) 39, 293, 402, 405, 408, 567, 588
Bme18I GGWCC 3 cut(s) 247, 286, 685
BmgBI CACGTC 4 cut(s) 361, 505, 510, 640
BmgT120I GGNCC 8 cut(s) 72, 171, 247, 286, 484, 685, 712, 717
BmiI GGNNCC 3 cut(s) 186, 200, 625
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 6 cut(s) 156, 434, 591, 689, 716, 742
Bsa29I ATCGAT 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 138, 180, 289
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 311, 553, 610
Bse118I RCCGGY 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 626
BseBI CCWGG 6 cut(s) 203, 266, 548, 605, 698, 737
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 138, 180, 289
BseLI CCNNNNNNNGG 4 cut(s) 202, 311, 553, 610
BseRI GAGGAG 3 cut(s) 7, 10, 596
BseXI GCAGC 3 cut(s) 387, 573, 577
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 4 cut(s) 218, 291, 380, 530
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 7 cut(s) 74, 172, 486, 701, 714, 719, 740
BshNI GGYRCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 667, 792
BsiWI CGTACG 1 cut(s) 531
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 4 cut(s) 202, 311, 553, 610
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 7 cut(s) 74, 172, 486, 701, 714, 719, 740
Bsp1286I GDGCHC 2 cut(s) 667, 792
Bsp13I TCCGGA 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 7 cut(s) 35, 38, 289, 291, 294, 403, 406
BspANI GGCC 7 cut(s) 74, 172, 486, 701, 714, 719, 740
BspDI ATCGAT 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 626
BspFNI CGCG 4 cut(s) 218, 291, 380, 530
BspLI GGNNCC 3 cut(s) 186, 200, 625
BspQI GCTCTTC 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 138, 180, 289
BssNI GRCGYC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 6 cut(s) 203, 266, 548, 605, 698, 737
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 570, 768, 826
BstDSI CCRYGG 2 cut(s) 138, 289
BstENI CCTNNNNNAGG 2 cut(s) 551, 608
BstFNI CGCG 4 cut(s) 218, 291, 380, 530
BstHHI GCGC 3 cut(s) 382, 429, 530
BstMAI GTCTC 1 cut(s) 345
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 4 cut(s) 406, 492, 574, 583
BstNI CCWGG 6 cut(s) 203, 266, 548, 605, 698, 737
BstNSI RCATGY 1 cut(s) 770
BstUI CGCG 4 cut(s) 218, 291, 380, 530
BstV1I GCAGC 3 cut(s) 387, 573, 577
BstX2I RGATCY 2 cut(s) 102, 184
BstYI RGATCY 2 cut(s) 102, 184
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 7 cut(s) 74, 172, 486, 701, 714, 719, 740
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 2 cut(s) 138, 289
BtrI CACGTC 4 cut(s) 361, 505, 510, 640
Cac8I GCNNGC 3 cut(s) 570, 768, 826
CfoI GCGC 3 cut(s) 382, 429, 530
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 8 cut(s) 72, 171, 247, 286, 484, 685, 712, 717
Cfr42I CCGCGG 1 cut(s) 292
ClaI ATCGAT 1 cut(s) 417
CpoI CGGWCCG 1 cut(s) 286
CseI GACGC 3 cut(s) 148, 224, 571
CsiI ACCWGGT 2 cut(s) 546, 603
Csp6I GTAC 5 cut(s) 454, 532, 634, 772, 820
CspI CGGWCCG 1 cut(s) 286
CviAII CATG 2 cut(s) 139, 767
CviQI GTAC 5 cut(s) 454, 532, 634, 772, 820
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Ecl136II GAGCTC 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 792
Eco47I GGWCC 3 cut(s) 247, 286, 685
Eco53kI GAGCTC 1 cut(s) 790
Eco57I CTGAAG 2 cut(s) 30, 781
EcoICRI GAGCTC 1 cut(s) 790
EcoNI CCTNNNNNAGG 2 cut(s) 551, 608
EcoRI GAATTC 2 cut(s) 122, 338
EcoRII CCWGG 6 cut(s) 201, 264, 546, 603, 696, 735
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 142, 770
FaiI YATR 6 cut(s) 70, 140, 330, 675, 768, 837
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 138, 766
FauI CCCGC 2 cut(s) 42, 287
Fnu4HI GCNGC 7 cut(s) 38, 292, 401, 404, 407, 566, 587
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 7 cut(s) 38, 292, 401, 404, 407, 566, 587
FspBI CTAG 2 cut(s) 227, 842
GlaI GCGC 3 cut(s) 381, 428, 529
GluI GCNGC 7 cut(s) 38, 292, 401, 404, 407, 566, 587
GsaI CCCAGC 1 cut(s) 469
HaeIII GGCC 7 cut(s) 74, 172, 486, 701, 714, 719, 740
HgaI GACGC 3 cut(s) 148, 224, 571
HhaI GCGC 3 cut(s) 382, 429, 530
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 2 cut(s) 142, 770
Hin6I GCGC 3 cut(s) 380, 427, 528
HinP1I GCGC 3 cut(s) 380, 427, 528
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 6 cut(s) 57, 256, 277, 386, 449, 594
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 2 cut(s) 247, 561
Hpy188III TCNNGA 6 cut(s) 127, 598, 627, 757, 842, 852
Hpy8I GTNNAC 2 cut(s) 247, 561
Hpy99I CGWCG 9 cut(s) 10, 13, 89, 92, 122, 164, 218, 362, 641
HpyAV CCTTC 2 cut(s) 51, 604
HpyCH4IV ACGT 6 cut(s) 243, 360, 504, 509, 518, 639
HpyCH4V TGCA 2 cut(s) 495, 766
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 492, 574, 583
HpySE526I ACGT 6 cut(s) 243, 360, 504, 509, 518, 639
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 2 cut(s) 142, 770
HspAI GCGC 3 cut(s) 380, 427, 528
Kpn2I TCCGGA 1 cut(s) 626
KspI CCGCGG 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 3 cut(s) 387, 573, 577
MabI ACCWGGT 2 cut(s) 546, 603
MaeI CTAG 2 cut(s) 227, 842
MaeII ACGT 6 cut(s) 243, 360, 504, 509, 518, 639
MaeIII GTNAC 2 cut(s) 368, 505
MboII GAAGA 3 cut(s) 36, 784, 787
MflI RGATCY 2 cut(s) 102, 184
MhlI GDGCHC 2 cut(s) 667, 792
MluCI AATT 6 cut(s) 122, 190, 298, 338, 343, 458
MlyI GAGTC 3 cut(s) 271, 380, 443
MmeI TCCRAC 1 cut(s) 726
MroI TCCGGA 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 614
MseI TTAA 1 cut(s) 704
MslI CAYNNNNRTG 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 291, 469
MvaI CCWGG 6 cut(s) 203, 266, 548, 605, 698, 737
MvnI CGCG 4 cut(s) 218, 291, 380, 530
MwoI GCNNNNNNNGC 4 cut(s) 406, 492, 574, 583
NciI CCSGG 6 cut(s) 156, 434, 591, 689, 716, 742
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 2 cut(s) 142, 770
NlaIV GGNNCC 3 cut(s) 186, 200, 625
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 368, 505
NspI RCATGY 1 cut(s) 770
PaeI GCATGC 1 cut(s) 770
PceI AGGCCT 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 5 cut(s) 93, 390, 495, 515, 569
PdmI GAANNNNTTC 1 cut(s) 614
PfeI GAWTC 3 cut(s) 57, 256, 594
Pfl23II CGTACG 1 cut(s) 531
PkrI GCNGC 7 cut(s) 39, 293, 402, 405, 408, 567, 588
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 3 cut(s) 271, 380, 443
PpsI GAGTC 3 cut(s) 271, 380, 443
Psp124BI GAGCTC 1 cut(s) 792
Psp6I CCWGG 6 cut(s) 201, 264, 546, 603, 696, 735
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 6 cut(s) 201, 264, 546, 603, 696, 735
PspLI CGTACG 1 cut(s) 531
PspN4I GGNNCC 3 cut(s) 186, 200, 625
PspPI GGNCC 8 cut(s) 72, 171, 247, 286, 484, 685, 712, 717
PsuI RGATCY 2 cut(s) 102, 184
PvuI CGATCG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 5 cut(s) 455, 533, 635, 773, 821
RsaNI GTAC 5 cut(s) 454, 532, 634, 772, 820
RseI CAYNNNNRTG 1 cut(s) 672
Rsr2I CGGWCCG 1 cut(s) 286
RsrII CGGWCCG 1 cut(s) 286
SacI GAGCTC 1 cut(s) 792
SacII CCGCGG 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 1 cut(s) 704
SatI GCNGC 7 cut(s) 38, 292, 401, 404, 407, 566, 587
Sau96I GGNCC 8 cut(s) 72, 171, 247, 286, 484, 685, 712, 717
SchI GAGTC 3 cut(s) 271, 380, 443
SduI GDGCHC 2 cut(s) 667, 792
SexAI ACCWGGT 2 cut(s) 546, 603
Sfr303I CCGCGG 1 cut(s) 292
SgrBI CCGCGG 1 cut(s) 292
SinI GGWCC 3 cut(s) 247, 286, 685
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 1 cut(s) 770
Sse9I AATT 6 cut(s) 122, 190, 298, 338, 343, 458
SseBI AGGCCT 1 cut(s) 701
SsiI CCGC 7 cut(s) 35, 38, 289, 291, 294, 403, 406
SspMI CTAG 2 cut(s) 227, 842
SstI GAGCTC 1 cut(s) 792
StuI AGGCCT 1 cut(s) 701
StyI CCWWGG 1 cut(s) 138
TaiI ACGT 6 cut(s) 246, 363, 507, 512, 521, 642
TaqI TCGA 8 cut(s) 84, 96, 117, 357, 393, 417, 423, 447
TasI AATT 6 cut(s) 122, 190, 298, 338, 343, 458
TauI GCSGC 4 cut(s) 40, 294, 406, 409
TfiI GAWTC 3 cut(s) 57, 256, 594
Tru1I TTAA 1 cut(s) 704
Tru9I TTAA 1 cut(s) 704
TseFI GTSAC 2 cut(s) 368, 505
TseI GCWGC 3 cut(s) 400, 565, 586
Tsp45I GTSAC 2 cut(s) 368, 505
TspGWI ACGGA 2 cut(s) 100, 161
VpaK11BI GGWCC 3 cut(s) 247, 286, 685
XagI CCTNNNNNAGG 2 cut(s) 551, 608
XapI RAATTY 5 cut(s) 122, 190, 298, 338, 458
XbaI TCTAGA 1 cut(s) 841
XceI RCATGY 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 614
XspI CTAG 2 cut(s) 227, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.