Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003980

Physical Location & Seq

Genomic Coordinates Forward (+)

13189133 .. 13189357

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCCTCAATCTCGATCCAGGTCGGCCTCACCCCCTCGGACGACAGAGGAAATCTGCCGGATTTGGGGACCAAGAATCTGTACCTAAGGGAATTCAATTTCCGGGACTTTGACATCGCGCGGGACGCCCATGCGCACGACTCGGTCGAGTTACTTCGCCGCCAGGGGATCGATTTCGAACGGAACAGGATTTCTGATTGGACTCGGTCCGGTTCGCGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000289 GO:0000291 GO:0000932 GO:0000956 GO:0002213 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

75

Amino Acids

8.51

Weight (kDa)

6.04

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44260 AT5G22250
fragaria_vesca	FvH4_3g25960 FvH4_6g19860
malus_domestica	MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1
prunus_persica	Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1
pyrus_communis	pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120
rosa_chinensis	RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241
rosa_laevigata	RLG00000023855 RLG00000034481
rosa_roxburghii	Rroxscaffold_1G00034130 Rroxscaffold_6G00406420
rosa_rugosa	Rorug03G0147600 Rorug05G0235200
rosa_samantha	Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600
rosa_wichuraiana	Rw3G017960 Rw5G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccII	CGCG	3 cut(s)	119, 121, 217
AciI	CCGC	3 cut(s)	121, 160, 217
AclWI	GGATC	2 cut(s)	10, 176
AcsI	RAATTY	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	65, 216
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	18, 162
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AlwI	GGATC	2 cut(s)	10, 176
AoxI	GGCC	2 cut(s)	3, 25
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	121, 136
AspS9I	GGNCC	2 cut(s)	69, 207
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	69, 207
AxyI	CCTNAGG	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	20, 164
BcnI	CCSGG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	3 cut(s)	20, 104, 164
Bme18I	GGWCC	2 cut(s)	69, 207
BmgT120I	GGNCC	2 cut(s)	69, 207
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	20, 104, 164
Bpu14I	TTCGAA	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	36, 163
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 216
Bse21I	CCTNAGG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	20, 164
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	36, 163
BseLI	CCNNNNNNNGG	2 cut(s)	65, 216
Bsh1236I	CGCG	3 cut(s)	119, 121, 217
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	5, 27
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	59, 103, 210
BslFI	GGGAC	3 cut(s)	82, 119, 137
BslI	CCNNNNNNNGG	2 cut(s)	65, 216
BsmFI	GGGAC	3 cut(s)	82, 119, 137
BsnI	GGCC	2 cut(s)	5, 27
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	15, 168
BspACI	CCGC	3 cut(s)	121, 160, 217
BspANI	GGCC	2 cut(s)	5, 27
BspDI	ATCGAT	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	119, 121, 217
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	10, 176
BspT104I	TTCGAA	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	36, 163
BssMI	GATC	2 cut(s)	15, 168
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	20, 164
BstACI	GRCGYC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	3 cut(s)	119, 121, 217
BstHHI	GCGC	2 cut(s)	121, 136
BstKTI	GATC	2 cut(s)	18, 171
BstMBI	GATC	2 cut(s)	15, 168
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	20, 164
BstSCI	CCNGG	3 cut(s)	18, 102, 162
BstUI	CGCG	3 cut(s)	119, 121, 217
Bsu15I	ATCGAT	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	5, 27
BsuTUI	ATCGAT	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	100
CfoI	GCGC	2 cut(s)	121, 136
Cfr13I	GGNCC	2 cut(s)	69, 207
ClaI	ATCGAT	1 cut(s)	171
CpoI	CGGWCCG	1 cut(s)	207
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	82
CspI	CGGWCCG	1 cut(s)	207
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	3 cut(s)	5, 27, 222
CviKI_1	RGCY	3 cut(s)	5, 27, 222
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	17, 170
DpnII	GATC	2 cut(s)	15, 168
Eco47I	GGWCC	2 cut(s)	69, 207
Eco81I	CCTNAGG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	18, 162
FaeI	CATG	1 cut(s)	134
FaiI	YATR	1 cut(s)	132
FaqI	GGGAC	3 cut(s)	82, 119, 137
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	160
FspAI	RTGCGCAY	1 cut(s)	135
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	120, 135
GluI	GCNGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	5, 27
HapII	CCGG	3 cut(s)	59, 103, 210
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	121, 136
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	2 cut(s)	119, 134
HinP1I	GCGC	2 cut(s)	119, 134
HinfI	GANTC	3 cut(s)	76, 140, 202
HpaII	CCGG	3 cut(s)	59, 103, 210
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	40, 196
Hpy188III	TCNNGA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	2 cut(s)	119, 134
Kzo9I	GATC	2 cut(s)	15, 168
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	5, 32, 72, 116, 149, 172, 176
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	17, 170
MboI	GATC	2 cut(s)	15, 168
MluCI	AATT	2 cut(s)	92, 97
MlyI	GAGTC	2 cut(s)	134, 196
MnlI	CCTC	4 cut(s)	16, 38, 41, 46
MspI	CCGG	3 cut(s)	59, 103, 210
MspR9I	CCNGG	3 cut(s)	20, 104, 164
MvaI	CCWGG	2 cut(s)	20, 164
MvnI	CGCG	3 cut(s)	119, 121, 217
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	15, 168
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	76
PflFI	GACNNNGTC	2 cut(s)	143, 205
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	134, 196
PpsI	GAGTC	2 cut(s)	134, 196
Psp6I	CCWGG	2 cut(s)	18, 162
PspGI	CCWGG	2 cut(s)	18, 162
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	69, 207
PsyI	GACNNNGTC	2 cut(s)	143, 205
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	15, 168
Sau96I	GGNCC	2 cut(s)	69, 207
SchI	GAGTC	2 cut(s)	134, 196
ScrFI	CCNGG	3 cut(s)	20, 104, 164
SetI	ASST	3 cut(s)	24, 87, 224
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	2 cut(s)	69, 207
Sse9I	AATT	2 cut(s)	92, 97
SsiI	CCGC	3 cut(s)	121, 160, 217
StyD4I	CCNGG	3 cut(s)	18, 102, 162
TaqI	TCGA	4 cut(s)	14, 147, 171, 177
TaqII	GACCGA	2 cut(s)	133, 195
TasI	AATT	2 cut(s)	92, 97
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	196
Tth111I	GACNNNGTC	2 cut(s)	143, 205
VpaK11BI	GGWCC	2 cut(s)	69, 207
XapI	RAATTY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.