Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003980

Physical Location & Seq

Genomic Coordinates Forward (+)

43569328 .. 43570547

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAATACACGCACACTTTCCTTATTATCGACTTCCTCCTTTTTTCTCCGAACCTTCCCCTCTCTCTCTCTTCCTCTCCATCCGTATATATAACTGCCTTCACTCCTCACTCTTCTCCAACCCAAAAACCCATCTCAGCGACTCCCAAGTCTCCAGTCTCCTCCTCCTCCTTCTTCTTTGATTATTTAATTAATATATTCAATTTCTCCGACATGTACTGCAACATGGATCACCCTCCAAATCCCAGCCCCATCGTGATCCGCGAAGTCTGGGCCCACAACCTGGACGCGGAATTCGAGCTGATCCAGAACGCGATCGACGACTTCCCTTACATCTCCATGGACACCGAGTTCCCCGGCCTCGTCTTCCGCCCCCAGCTGGACCCCACCCGCCCCTACGGCAAGCAGCTCCGCCCCTCCGATCATTACAAGGTCCTCAAGTCCAACGTCGACGCGCTCAGCCTGATTCAGGTGGGCCTCACGCTCTCCGACTCCCGCGGCAACCTCCCCGACCTCGGCACCCGCGGCGCCACGCGCTTCATCTGGGAGTTCAACTTCAACGACTTCGACGTCGCGCGCGACCCCCACGCTCCGGACTCCATCGAGCTCCTCCGCCGCCAGGGCATCGACTTCGACCGCAACAGGGCCGAGGGCGTCGACTCGGCGCGTTTCGCCGCGCTCATGATGACGTCGGGGCTCGTCTGCAACGACGCCGTCAGCTGGGTCACCTTCCACAGCGCGTACGACTTCGGGTACCTGGTCAAGATCCTCACGCGCCGGAACCTGCCGAGTGGCATGAAGGAGTTTCACAAAGTTCTCAGGGCCTTTTTCGGGAATAGAATTTACGACATCAAGCACATGATGCGGTTCTGTAAGAGCCTGTATGGCGGGCTGGACCGGGTCGCCAGGACCTTGGAGGTGGACCGGGCCGTCGGGAAGTGCCACCAGGCCGGGTCAGATAGCTTGCTGACGTGGCACGCGTTTCAGAAGATGAGGGATGTGTATTTTGTAAATGATGGGCCGGAGCAGCACGCCGGAGTGTTGTACGGTCTCGAGGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000289 GO:0000291 GO:0000932 GO:0000956 GO:0002213 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

354

Amino Acids

40.29

Weight (kDa)

6.05

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	90 - 219	8.9e-11	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44260 AT5G22250
fragaria_vesca	FvH4_3g25960 FvH4_6g19860
malus_domestica	MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1
prunus_persica	Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1
pyrus_communis	pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120
rosa_chinensis	RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241
rosa_laevigata	RLG00000023855 RLG00000034481
rosa_roxburghii	Rroxscaffold_1G00034130 Rroxscaffold_6G00406420
rosa_rugosa	Rorug03G0147600 Rorug05G0235200
rosa_samantha	Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600
rosa_wichuraiana	Rw3G017960 Rw5G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	148, 569, 929
AatII	GACGTC	2 cut(s)	573, 692
Acc36I	ACCTGC	1 cut(s)	792
Acc65I	GGTACC	1 cut(s)	753
AccB1I	GGYRCC	3 cut(s)	518, 527, 753
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccI	GTMKAC	2 cut(s)	450, 657
AccIII	TCCGGA	1 cut(s)	592
AclWI	GGATC	4 cut(s)	237, 253, 298, 760
AcsI	RAATTY	2 cut(s)	293, 840
AcyI	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
AfaI	GTAC	4 cut(s)	218, 743, 755, 1046
AflIII	ACRYGT	2 cut(s)	213, 978
AgsI	TTSAA	3 cut(s)	202, 553, 559
AjiI	CACGTC	1 cut(s)	972
AjnI	CCWGG	5 cut(s)	282, 618, 756, 905, 945
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	301, 379, 409, 607, 720, 963
AluI	AGCT	6 cut(s)	301, 379, 409, 607, 720, 963
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	3 cut(s)	156, 163, 1055
AlwI	GGATC	4 cut(s)	237, 253, 298, 760
Ama87I	CYCGRG	1 cut(s)	1052
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	8 cut(s)	273, 358, 475, 645, 822, 927, 948, 1019
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	406, 1027
ApoI	RAATTY	2 cut(s)	293, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AseI	ATTAAT	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	753
AspLEI	GCGC	9 cut(s)	457, 530, 537, 577, 579, 667, 679, 740, 777
AsuC2I	CCSGG	4 cut(s)	357, 899, 926, 952
AsuHPI	GGTGA	2 cut(s)	224, 718
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	5 cut(s)	382, 433, 895, 909, 922
BaeGI	GKGCMC	1 cut(s)	277
BanI	GGYRCC	3 cut(s)	518, 527, 753
BanII	GRGCYC	3 cut(s)	277, 609, 699
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	418, 1039
BccI	CCATC	5 cut(s)	88, 140, 260, 608, 1010
BceAI	ACGGC	3 cut(s)	415, 698, 914
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	5 cut(s)	284, 620, 758, 907, 947
BcnI	CCSGG	4 cut(s)	357, 899, 926, 952
BcoDI	GTCTC	3 cut(s)	156, 163, 1055
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	792
BglI	GCCNNNNNGGC	3 cut(s)	399, 621, 885
BisI	GCNGC	6 cut(s)	407, 499, 526, 616, 675, 1028
BlpI	GCTNAGC	1 cut(s)	458
BlsI	GCNGC	6 cut(s)	408, 500, 527, 617, 676, 1029
Bme1390I	CCNGG	9 cut(s)	284, 357, 620, 758, 899, 907, 926, 947, 952
Bme18I	GGWCC	5 cut(s)	382, 433, 895, 909, 922
BmeT110I	CYCGRG	1 cut(s)	1052
BmgBI	CACGTC	1 cut(s)	972
BmiI	GGNNCC	6 cut(s)	275, 384, 520, 529, 755, 782
BmrFI	CCNGG	9 cut(s)	284, 357, 620, 758, 899, 907, 926, 947, 952
BmsI	GCATC	2 cut(s)	633, 852
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	4 cut(s)	357, 899, 926, 952
BsaHI	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
BsaI	GGTCTC	1 cut(s)	1055
BsaJI	CCNNGG	8 cut(s)	339, 355, 496, 514, 523, 619, 648, 912
BsaWI	WCCGGW	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	5 cut(s)	284, 620, 758, 907, 947
BseDI	CCNNGG	8 cut(s)	339, 355, 496, 514, 523, 619, 648, 912
BseGI	GGATG	2 cut(s)	80, 1003
BseMII	CTCAG	3 cut(s)	150, 472, 832
BseNI	ACTGG	1 cut(s)	155
BsePI	GCGCGC	1 cut(s)	575
BseRI	GAGGAG	5 cut(s)	96, 151, 154, 157, 599
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	418, 1039
BseYI	CCCAGC	3 cut(s)	245, 375, 720
Bsh1285I	CGRYCG	2 cut(s)	318, 637
BshFI	GGCC	8 cut(s)	275, 360, 477, 647, 824, 929, 950, 1021
BshNI	GGYRCC	3 cut(s)	518, 527, 753
BsiEI	CGRYCG	2 cut(s)	318, 637
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	8 cut(s)	357, 593, 778, 898, 925, 951, 1022, 1035
BsiWI	CGTACG	1 cut(s)	741
BsmAI	GTCTC	3 cut(s)	156, 163, 1055
BsnI	GGCC	8 cut(s)	275, 360, 477, 647, 824, 929, 950, 1021
Bso31I	GGTCTC	1 cut(s)	1055
BsoBI	CYCGRG	1 cut(s)	1052
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	277, 609, 699
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
Bsp1720I	GCTNAGC	1 cut(s)	458
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	8 cut(s)	275, 360, 477, 647, 824, 929, 950, 1021
BspCNI	CTCAG	3 cut(s)	149, 471, 831
BspEI	TCCGGA	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	6 cut(s)	275, 384, 520, 529, 755, 782
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	4 cut(s)	237, 253, 298, 760
BspT107I	GGYRCC	3 cut(s)	518, 527, 753
BspTNI	GGTCTC	1 cut(s)	1055
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	8 cut(s)	339, 355, 496, 514, 523, 619, 648, 912
BssHII	GCGCGC	1 cut(s)	575
BssMI	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
BssNI	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
BssT1I	CCWWGG	2 cut(s)	339, 912
Bst2UI	CCWGG	5 cut(s)	284, 620, 758, 907, 947
Bst4CI	ACNGT	1 cut(s)	1049
Bst6I	CTCTTC	2 cut(s)	76, 118
BstACI	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstC8I	GCNNGC	6 cut(s)	404, 577, 890, 965, 978, 1032
BstDEI	CTNAG	3 cut(s)	136, 458, 818
BstDSI	CCRYGG	3 cut(s)	339, 496, 523
BstEII	GGTNACC	1 cut(s)	724
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	80, 1003
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	9 cut(s)	457, 530, 537, 577, 579, 667, 679, 740, 777
BstKTI	GATC	6 cut(s)	232, 261, 306, 318, 424, 768
BstMAI	GTCTC	3 cut(s)	156, 163, 1055
BstMBI	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
BstMCI	CGRYCG	2 cut(s)	318, 637
BstMWI	GCNNNNNNNGC	9 cut(s)	399, 525, 534, 621, 671, 862, 885, 973, 1027
BstNI	CCWGG	5 cut(s)	284, 620, 758, 907, 947
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	724
BstSCI	CCNGG	9 cut(s)	282, 355, 618, 756, 897, 905, 924, 945, 950
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	418, 1039
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	8 cut(s)	275, 360, 477, 647, 824, 929, 950, 1021
BtgI	CCRYGG	3 cut(s)	339, 496, 523
BtrI	CACGTC	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	80, 1003
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	6 cut(s)	404, 577, 890, 965, 978, 1032
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	9 cut(s)	457, 530, 537, 577, 579, 667, 679, 740, 777
Cfr42I	CCGCGG	2 cut(s)	499, 526
CseI	GACGC	4 cut(s)	296, 461, 643, 719
CsiI	ACCWGGT	1 cut(s)	756
Csp6I	GTAC	4 cut(s)	217, 742, 754, 1045
CviAII	CATG	6 cut(s)	214, 226, 340, 682, 796, 859
CviQI	GTAC	4 cut(s)	217, 742, 754, 1045
DdeI	CTNAG	3 cut(s)	136, 458, 818
DinI	GGCGCC	1 cut(s)	529
DpnI	GATC	6 cut(s)	231, 260, 305, 317, 423, 767
DpnII	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
DrdI	GACNNNNNNGTC	3 cut(s)	148, 569, 929
DseDI	GACNNNNNNGTC	3 cut(s)	148, 569, 929
Eam1104I	CTCTTC	2 cut(s)	76, 118
EarI	CTCTTC	2 cut(s)	76, 118
EciI	GGCGGA	3 cut(s)	359, 401, 602
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	2 cut(s)	339, 912
Eco24I	GRGCYC	3 cut(s)	277, 609, 699
Eco31I	GGTCTC	1 cut(s)	1055
Eco47I	GGWCC	5 cut(s)	382, 433, 895, 909, 922
Eco53kI	GAGCTC	1 cut(s)	607
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	1 cut(s)	724
EcoICRI	GAGCTC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	3 cut(s)	433, 822, 909
EcoO65I	GGTNACC	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	5 cut(s)	282, 618, 756, 905, 945
EcoT14I	CCWWGG	2 cut(s)	339, 912
EcoT38I	GRGCYC	3 cut(s)	277, 609, 699
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	339, 912
FaeI	CATG	6 cut(s)	217, 229, 343, 685, 799, 862
FatI	CATG	6 cut(s)	213, 225, 339, 681, 795, 858
FauI	CCCGC	4 cut(s)	398, 503, 530, 881
FblI	GTMKAC	2 cut(s)	450, 657
Fnu4HI	GCNGC	6 cut(s)	407, 499, 526, 616, 675, 1028
FokI	GGATG	2 cut(s)	67, 1010
FriOI	GRGCYC	3 cut(s)	277, 609, 699
Fsp4HI	GCNGC	6 cut(s)	407, 499, 526, 616, 675, 1028
GlaI	GCGC	9 cut(s)	456, 529, 536, 576, 578, 666, 678, 739, 776
GluI	GCNGC	6 cut(s)	407, 499, 526, 616, 675, 1028
GsaI	CCCAGC	3 cut(s)	249, 379, 724
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	8 cut(s)	275, 360, 477, 647, 824, 929, 950, 1021
HapII	CCGG	8 cut(s)	357, 593, 778, 898, 925, 951, 1022, 1035
HgaI	GACGC	4 cut(s)	296, 461, 643, 719
HhaI	GCGC	9 cut(s)	457, 530, 537, 577, 579, 667, 679, 740, 777
Hin1I	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
Hin1II	CATG	6 cut(s)	217, 229, 343, 685, 799, 862
Hin6I	GCGC	9 cut(s)	455, 528, 535, 575, 577, 665, 677, 738, 775
HinP1I	GCGC	9 cut(s)	455, 528, 535, 575, 577, 665, 677, 738, 775
HincII	GTYRAC	2 cut(s)	451, 658
HindII	GTYRAC	2 cut(s)	451, 658
HinfI	GANTC	5 cut(s)	142, 466, 491, 596, 659
HpaII	CCGG	8 cut(s)	357, 593, 778, 898, 925, 951, 1022, 1035
HphI	GGTGA	2 cut(s)	224, 718
Hpy166II	GTNNAC	3 cut(s)	451, 658, 922
Hpy188I	TCNGA	6 cut(s)	51, 211, 421, 490, 958, 987
Hpy188III	TCNNGA	8 cut(s)	256, 307, 593, 682, 763, 832, 934, 1052
Hpy8I	GTNNAC	3 cut(s)	451, 658, 922
Hpy99I	CGWCG	9 cut(s)	323, 452, 455, 572, 575, 659, 694, 713, 935
HpyAV	CCTTC	5 cut(s)	65, 109, 181, 739, 793
HpyCH4III	ACNGT	1 cut(s)	1049
HpyCH4IV	ACGT	4 cut(s)	447, 570, 689, 971
HpyCH4V	TGCA	2 cut(s)	222, 705
HpyF10VI	GCNNNNNNNGC	9 cut(s)	399, 525, 534, 621, 671, 862, 885, 973, 1027
HpyF3I	CTNAG	3 cut(s)	136, 458, 818
HpySE526I	ACGT	4 cut(s)	447, 570, 689, 971
Hsp92I	GRCGYC	5 cut(s)	528, 570, 654, 689, 711
Hsp92II	CATG	6 cut(s)	217, 229, 343, 685, 799, 862
HspAI	GCGC	9 cut(s)	455, 528, 535, 575, 577, 665, 677, 738, 775
KasI	GGCGCC	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	592
KpnI	GGTACC	1 cut(s)	757
KspI	CCGCGG	2 cut(s)	499, 526
Kzo9I	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
LmnI	GCTCC	4 cut(s)	414, 595, 612, 1024
Lsp1109I	GCAGC	2 cut(s)	418, 1039
LweI	GCATC	2 cut(s)	633, 852
MabI	ACCWGGT	1 cut(s)	756
MaeII	ACGT	4 cut(s)	447, 570, 689, 971
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	6 cut(s)	231, 260, 305, 317, 423, 767
MauBI	CGCGCGCG	1 cut(s)	575
MboI	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
MboII	GAAGA	5 cut(s)	63, 105, 166, 358, 1000
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	3 cut(s)	277, 609, 699
MluCI	AATT	4 cut(s)	189, 202, 293, 840
MluI	ACGCGT	1 cut(s)	978
Mly113I	GGCGCC	1 cut(s)	528
MlyI	GAGTC	4 cut(s)	136, 485, 590, 653
MmeI	TCCRAC	4 cut(s)	143, 234, 468, 513
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	2 cut(s)	188, 192
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	4 cut(s)	379, 498, 525, 720
MspI	CCGG	8 cut(s)	357, 593, 778, 898, 925, 951, 1022, 1035
MspR9I	CCNGG	9 cut(s)	284, 357, 620, 758, 899, 907, 926, 947, 952
MvaI	CCWGG	5 cut(s)	284, 620, 758, 907, 947
MwoI	GCNNNNNNNGC	9 cut(s)	399, 525, 534, 621, 671, 862, 885, 973, 1027
NarI	GGCGCC	1 cut(s)	528
NciI	CCSGG	4 cut(s)	357, 899, 926, 952
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
NlaIII	CATG	6 cut(s)	217, 229, 343, 685, 799, 862
NlaIV	GGNNCC	6 cut(s)	275, 384, 520, 529, 755, 782
NmeAIII	GCCGAG	4 cut(s)	495, 641, 673, 813
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	1 cut(s)	217
PacI	TTAATTAA	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	681
PauI	GCGCGC	1 cut(s)	575
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	7 cut(s)	261, 294, 318, 567, 576, 705, 977
PfeI	GAWTC	1 cut(s)	466
Pfl23II	CGTACG	1 cut(s)	741
PflFI	GACNNNGTC	2 cut(s)	713, 899
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	6 cut(s)	408, 500, 527, 617, 676, 1029
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	4 cut(s)	136, 485, 590, 653
PluTI	GGCGCC	1 cut(s)	531
PpsI	GAGTC	4 cut(s)	136, 485, 590, 653
PpuMI	RGGWCCY	2 cut(s)	433, 909
PscI	ACATGT	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	609
Psp5II	RGGWCCY	2 cut(s)	433, 909
Psp6I	CCWGG	5 cut(s)	282, 618, 756, 905, 945
PspEI	GGTNACC	1 cut(s)	724
PspFI	CCCAGC	3 cut(s)	245, 375, 720
PspGI	CCWGG	5 cut(s)	282, 618, 756, 905, 945
PspLI	CGTACG	1 cut(s)	741
PspN4I	GGNNCC	6 cut(s)	275, 384, 520, 529, 755, 782
PspOMI	GGGCCC	1 cut(s)	273
PspPPI	RGGWCCY	2 cut(s)	433, 909
PsuI	RGATCY	1 cut(s)	765
PsyI	GACNNNGTC	2 cut(s)	713, 899
PteI	GCGCGC	1 cut(s)	575
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	2 cut(s)	379, 720
RsaI	GTAC	4 cut(s)	218, 743, 755, 1046
RsaNI	GTAC	4 cut(s)	217, 742, 754, 1045
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	609
SacII	CCGCGG	2 cut(s)	499, 526
SalI	GTCGAC	2 cut(s)	449, 656
SaqAI	TTAA	2 cut(s)	188, 192
SatI	GCNGC	6 cut(s)	407, 499, 526, 616, 675, 1028
Sau3AI	GATC	6 cut(s)	229, 258, 303, 315, 421, 765
SchI	GAGTC	4 cut(s)	136, 485, 590, 653
ScrFI	CCNGG	9 cut(s)	284, 357, 620, 758, 899, 907, 926, 947, 952
SduI	GDGCHC	3 cut(s)	277, 609, 699
SexAI	ACCWGGT	1 cut(s)	756
SfaNI	GCATC	2 cut(s)	633, 852
SfoI	GGCGCC	1 cut(s)	529
Sfr274I	CTCGAG	1 cut(s)	1052
Sfr303I	CCGCGG	2 cut(s)	499, 526
SgrBI	CCGCGG	2 cut(s)	499, 526
SgrDI	CGTCGACG	1 cut(s)	449
SinI	GGWCC	5 cut(s)	382, 433, 895, 909, 922
SlaI	CTCGAG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	437, 1052
SmoI	CTYRAG	2 cut(s)	437, 1052
Sse9I	AATT	4 cut(s)	189, 202, 293, 840
SspDI	GGCGCC	1 cut(s)	527
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	9 cut(s)	282, 355, 618, 756, 897, 905, 924, 945, 950
StyI	CCWWGG	2 cut(s)	339, 912
TaaI	ACNGT	1 cut(s)	1049
TaiI	ACGT	4 cut(s)	450, 573, 692, 974
TasI	AATT	4 cut(s)	189, 202, 293, 840
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	4 cut(s)	501, 528, 618, 677
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	188, 192
Tru9I	TTAA	2 cut(s)	188, 192
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	2 cut(s)	406, 1027
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	529, 812
TspGWI	ACGGA	1 cut(s)	73
Tth111I	GACNNNGTC	2 cut(s)	713, 899
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	5 cut(s)	382, 433, 895, 909, 922
VspI	ATTAAT	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	293, 840
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	1052
XmiI	GTMKAC	2 cut(s)	450, 657
ZraI	GACGTC	2 cut(s)	571, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.