pycom14g03120

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
2409218 .. 2410276
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03120.1

Sequence Viewer

Length: 846 bp
ATGTCATCATCCGGCCCCCCGCCACCCAAGCCTCCGTCGCCGCGAGACATCCTGATCCGTTCGGTATGGTCCGATAACCTCGAGTCTGAGTTCGAACTGATTCGATCCGTCATCGACGATTTCCCCTTGATTTCCATGGACACCGAGTTCCCGGGCGTCGTGGTCCGACCCGACCCTAATGACCCCAATTTCCGCCACCGCGAACCCACCGCGCACTACCTCATGCTCAAGGCCAACGTTGATCGCCTCAATCTGATCCAGGTGGGCCTCACCCTTTCGGACGACAGTGGGAATCTGCCGGATTTGGGGACCAAGAATCTGTATATCTGGGAATTCAATTTCCGGGACTTCGACGTCGCGCGGGACGCCCACGCGCACGATTCTGTAGAGTTGCTTCGCCGGCAGGGAATCGATTTCGAGCGGAACCGGGATTTCGGGGTAGACTCGGTTCGGTTCGCGGCGCTGATGATGTCGTCCGGGCTCGTCTGCAACGACGCCGTTAACTGGGTCACGTTCCATAGCGTCTACGATTTTGGGTACCTGGTCAAGGTGTTGACTCAGCGAGTCTTGCCGGACGAGTTGTCGGTGTTCTTGAATTACGTGAGGATTTTCTTTGGGTCTGGAGTGTACGACGTGAAGCACCTGACGAGGTTCTGCGCCAGCCTCTATGGTGGGTTGGACCGGGTCTGCCAGACACTGAATGTGGAGCGGGTTGCCGGTAAGAGCCACCAGGCCGGGTCGGATAGCCTGCTGACCCTGCACGCGTTCCAGAGGATCAGAGAGGTCTACTTTCCGAAGAATGGGATCGAGCAGTATGCTGGCATTTTGTATGGTCTAGAGAATTAG

Protein Analysis

282

Amino Acids

31.92

Weight (kDa)

5.36

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 22 - 147 2e-11 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AatII GACGTC 1 cut(s) 357
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 537
AccBSI CCGCTC 2 cut(s) 421, 709
AccI GTMKAC 3 cut(s) 441, 525, 786
AccII CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
AciI CCGC 9 cut(s) 20, 41, 193, 199, 210, 361, 421, 458, 709
AclI AACGTT 1 cut(s) 237
AclWI GGATC 5 cut(s) 49, 99, 250, 782, 812
AcsI RAATTY 1 cut(s) 332
AcyI GRCGYC 4 cut(s) 156, 354, 366, 495
AfaI GTAC 2 cut(s) 539, 629
AfiI CCNNNNNNNGG 4 cut(s) 305, 504, 547, 800
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 2 cut(s) 337, 595
AhdI GACNNNNNGTC 1 cut(s) 580
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 3 cut(s) 258, 540, 729
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 5 cut(s) 49, 99, 250, 782, 812
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 2 cut(s) 80, 151
AoxI GGCC 4 cut(s) 13, 231, 265, 732
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 5 cut(s) 214, 361, 376, 463, 659
AspS9I GGNCC 6 cut(s) 14, 69, 163, 265, 309, 679
AsuC2I CCSGG 7 cut(s) 152, 153, 344, 428, 478, 683, 736
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 2 cut(s) 80, 151
AvaII GGWCC 4 cut(s) 69, 163, 309, 679
BanI GGYRCC 1 cut(s) 537
BanII GRGCYC 1 cut(s) 483
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 3 cut(s) 260, 542, 731
BcnI CCSGG 7 cut(s) 152, 153, 344, 428, 478, 683, 736
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 2 cut(s) 41, 459
BlsI GCNGC 2 cut(s) 42, 460
Bme18I GGWCC 4 cut(s) 69, 163, 309, 679
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 2 cut(s) 80, 151
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 6 cut(s) 14, 69, 163, 265, 309, 679
BmiI GGNNCC 4 cut(s) 16, 310, 425, 539
BmrI ACTGGG 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 514
BpmI CTGGAG 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 7 cut(s) 152, 153, 344, 428, 478, 683, 736
Bsa29I ATCGAT 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 601
BsaHI GRCGYC 4 cut(s) 156, 354, 366, 495
BsaJI CCNNGG 2 cut(s) 135, 151
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 504, 547, 800
Bse118I RCCGGY 2 cut(s) 399, 716
Bse1I ACTGG 1 cut(s) 509
BseBI CCWGG 3 cut(s) 260, 542, 731
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 135, 151
BseGI GGATG 2 cut(s) 8, 48
BseLI CCNNNNNNNGG 4 cut(s) 305, 504, 547, 800
BseMII CTCAG 2 cut(s) 78, 572
BseNI ACTGG 1 cut(s) 509
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
BshFI GGCC 4 cut(s) 15, 233, 267, 734
BshNI GGYRCC 1 cut(s) 537
BshVI ATCGAT 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 80, 151
BslFI GGGAC 3 cut(s) 322, 359, 377
BslI CCNNNNNNNGG 4 cut(s) 305, 504, 547, 800
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 3 cut(s) 322, 359, 377
BsnI GGCC 4 cut(s) 15, 233, 267, 734
BsoBI CYCGRG 2 cut(s) 80, 151
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 6 cut(s) 54, 104, 241, 255, 774, 804
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 9 cut(s) 20, 41, 193, 199, 210, 361, 421, 458, 709
BspANI GGCC 4 cut(s) 15, 233, 267, 734
BspCNI CTCAG 2 cut(s) 79, 571
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
BspLI GGNNCC 4 cut(s) 16, 310, 425, 539
BspPI GGATC 5 cut(s) 49, 99, 250, 782, 812
BspT104I TTCGAA 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 537
BsrBI CCGCTC 2 cut(s) 421, 709
BsrFI RCCGGY 2 cut(s) 399, 716
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 2 cut(s) 399, 716
BssECI CCNNGG 2 cut(s) 135, 151
BssMI GATC 6 cut(s) 54, 104, 241, 255, 774, 804
BssNI GRCGYC 4 cut(s) 156, 354, 366, 495
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 260, 542, 731
Bst4CI ACNGT 1 cut(s) 287
BstACI GRCGYC 4 cut(s) 156, 354, 366, 495
BstBAI YACGTR 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 5 cut(s) 401, 661, 749, 762, 820
BstDEI CTNAG 2 cut(s) 87, 558
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 2 cut(s) 8, 48
BstFNI CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 5 cut(s) 214, 361, 376, 463, 659
BstKTI GATC 6 cut(s) 57, 107, 244, 258, 777, 807
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 6 cut(s) 54, 104, 241, 255, 774, 804
BstMWI GCNNNNNNNGC 6 cut(s) 28, 37, 365, 400, 568, 757
BstNI CCWGG 3 cut(s) 260, 542, 731
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 4 cut(s) 15, 233, 267, 734
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 2 cut(s) 8, 48
BtsIMutI CAGTG 2 cut(s) 292, 695
Cac8I GCNNGC 5 cut(s) 401, 661, 749, 762, 820
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 5 cut(s) 214, 361, 376, 463, 659
Cfr10I RCCGGY 2 cut(s) 399, 716
Cfr13I GGNCC 6 cut(s) 14, 69, 163, 265, 309, 679
Cfr9I CCCGGG 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 4 cut(s) 145, 374, 503, 511
CsiI ACCWGGT 1 cut(s) 540
Csp6I GTAC 2 cut(s) 538, 628
CviAII CATG 2 cut(s) 136, 223
CviJI RGCY 9 cut(s) 15, 31, 233, 267, 481, 663, 726, 734, 747
CviKI_1 RGCY 9 cut(s) 15, 31, 233, 267, 481, 663, 726, 734, 747
CviQI GTAC 2 cut(s) 538, 628
DdeI CTNAG 2 cut(s) 87, 558
DpnI GATC 6 cut(s) 56, 106, 243, 257, 776, 806
DpnII GATC 6 cut(s) 54, 104, 241, 255, 774, 804
DrdI GACNNNNNNGTC 1 cut(s) 353
DriI GACNNNNNGTC 1 cut(s) 580
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1105I GACNNNNNGTC 1 cut(s) 580
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 4 cut(s) 69, 163, 309, 679
Eco88I CYCGRG 2 cut(s) 80, 151
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 258, 540, 729
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 226
FaiI YATR 8 cut(s) 67, 137, 224, 324, 519, 669, 816, 831
FaqI GGGAC 3 cut(s) 322, 359, 377
FatI CATG 2 cut(s) 135, 222
FauI CCCGC 3 cut(s) 27, 354, 702
FblI GTMKAC 3 cut(s) 441, 525, 786
Fnu4HI GCNGC 2 cut(s) 41, 459
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 2 cut(s) 41, 459
FspBI CTAG 1 cut(s) 836
GlaI GCGC 5 cut(s) 213, 360, 375, 462, 658
GluI GCNGC 2 cut(s) 41, 459
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 4 cut(s) 15, 233, 267, 734
HgaI GACGC 4 cut(s) 145, 374, 503, 511
HhaI GCGC 5 cut(s) 214, 361, 376, 463, 659
Hin1I GRCGYC 4 cut(s) 156, 354, 366, 495
Hin1II CATG 2 cut(s) 139, 226
Hin6I GCGC 5 cut(s) 212, 359, 374, 461, 657
HinP1I GCGC 5 cut(s) 212, 359, 374, 461, 657
HincII GTYRAC 2 cut(s) 502, 555
HindII GTYRAC 2 cut(s) 502, 555
HinfI GANTC 9 cut(s) 83, 100, 292, 316, 380, 408, 443, 556, 564
HpaI GTTAAC 1 cut(s) 502
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 6 cut(s) 442, 502, 526, 555, 628, 787
Hpy188I TCNGA 8 cut(s) 73, 88, 167, 255, 280, 742, 779, 795
Hpy188III TCNNGA 5 cut(s) 52, 592, 621, 769, 836
Hpy8I GTNNAC 6 cut(s) 442, 502, 526, 555, 628, 787
Hpy99I CGWCG 7 cut(s) 40, 119, 161, 356, 359, 497, 635
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 5 cut(s) 237, 354, 512, 600, 633
HpyCH4V TGCA 2 cut(s) 489, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 37, 365, 400, 568, 757
HpyF3I CTNAG 2 cut(s) 87, 558
HpySE526I ACGT 5 cut(s) 237, 354, 512, 600, 633
Hsp92I GRCGYC 4 cut(s) 156, 354, 366, 495
Hsp92II CATG 2 cut(s) 139, 226
HspAI GCGC 5 cut(s) 212, 359, 374, 461, 657
KpnI GGTACC 1 cut(s) 541
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 6 cut(s) 54, 104, 241, 255, 774, 804
LmnI GCTCC 1 cut(s) 706
MabI ACCWGGT 1 cut(s) 540
MaeI CTAG 1 cut(s) 836
MaeII ACGT 5 cut(s) 237, 354, 512, 600, 633
MaeIII GTNAC 1 cut(s) 508
MalI GATC 6 cut(s) 56, 106, 243, 257, 776, 806
MbiI CCGCTC 2 cut(s) 421, 709
MboI GATC 6 cut(s) 54, 104, 241, 255, 774, 804
MboII GAAGA 1 cut(s) 808
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 5 cut(s) 187, 332, 337, 595, 841
MluI ACGCGT 1 cut(s) 762
MlyI GAGTC 4 cut(s) 92, 437, 550, 573
MmeI TCCRAC 3 cut(s) 190, 657, 720
MroNI GCCGGC 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 1 cut(s) 501
MvaI CCWGG 3 cut(s) 260, 542, 731
MvnI CGCG 8 cut(s) 43, 201, 212, 359, 361, 374, 458, 764
MwoI GCNNNNNNNGC 6 cut(s) 28, 37, 365, 400, 568, 757
NaeI GCCGGC 1 cut(s) 401
NciI CCSGG 7 cut(s) 152, 153, 344, 428, 478, 683, 736
NcoI CCATGG 1 cut(s) 135
NdeII GATC 6 cut(s) 54, 104, 241, 255, 774, 804
NgoMIV GCCGGC 1 cut(s) 399
NlaIII CATG 2 cut(s) 139, 226
NlaIV GGNNCC 4 cut(s) 16, 310, 425, 539
NmuCI GTSAC 1 cut(s) 508
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 5 cut(s) 100, 292, 316, 380, 408
PflFI GACNNNGTC 1 cut(s) 683
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 2 cut(s) 42, 460
PleI GAGTC 4 cut(s) 91, 437, 550, 572
PpsI GAGTC 4 cut(s) 91, 437, 550, 572
Ppu21I YACGTR 1 cut(s) 601
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 3 cut(s) 258, 540, 729
PspGI CCWGG 3 cut(s) 258, 540, 729
PspN4I GGNNCC 4 cut(s) 16, 310, 425, 539
PspPI GGNCC 6 cut(s) 14, 69, 163, 265, 309, 679
PspXI VCTCGAGB 1 cut(s) 80
PsrI GAACNNNNNNTAC 2 cut(s) 432, 464
PstNI CAGNNNCTG 1 cut(s) 697
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 2 cut(s) 539, 629
RsaNI GTAC 2 cut(s) 538, 628
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 41, 459
Sau3AI GATC 6 cut(s) 54, 104, 241, 255, 774, 804
Sau96I GGNCC 6 cut(s) 14, 69, 163, 265, 309, 679
SchI GAGTC 4 cut(s) 92, 437, 550, 573
SduI GDGCHC 1 cut(s) 483
SexAI ACCWGGT 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 93
SinI GGWCC 4 cut(s) 69, 163, 309, 679
SlaI CTCGAG 1 cut(s) 80
SmaI CCCGGG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 80, 227
SmoI CTYRAG 2 cut(s) 80, 227
Sse9I AATT 5 cut(s) 187, 332, 337, 595, 841
SsiI CCGC 9 cut(s) 20, 41, 193, 199, 210, 361, 421, 458, 709
SspMI CTAG 1 cut(s) 836
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 5 cut(s) 240, 357, 515, 603, 636
TaqI TCGA 8 cut(s) 81, 93, 103, 114, 351, 411, 417, 807
TasI AATT 5 cut(s) 187, 332, 337, 595, 841
TauI GCSGC 2 cut(s) 43, 461
TfiI GAWTC 5 cut(s) 100, 292, 316, 380, 408
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 2 cut(s) 292, 702
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
TspGWI ACGGA 3 cut(s) 24, 47, 97
TspMI CCCGGG 1 cut(s) 151
TspRI CASTG 2 cut(s) 292, 702
Tth111I GACNNNGTC 1 cut(s) 683
VpaK11BI GGWCC 4 cut(s) 69, 163, 309, 679
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 835
XhoI CTCGAG 1 cut(s) 80
XmaI CCCGGG 1 cut(s) 151
XmiI GTMKAC 3 cut(s) 441, 525, 786
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 836
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.