Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003980

Physical Location & Seq

Genomic Coordinates Forward (+)

40335431 .. 40336270

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATCACCCTCCAAATCCCAGCCCCATCGTGATCCGTGAGGTCTGGGCCCACAACCTGGACGCGGAATTCGAGCTGATCCAGAACGCGATCGACGACTTCCCTTACATCTCCATGGACACCGAGTTCCCCGGCCTCGTCTTCCGCCCCCAGCTGGACCCCACCCGCCCCTACGGCAAGCAGCTCCGCCCCTCCGATCATTACAAGGTCCTCAAGTCCAACGTCGACGCGCTCAGCCTGATTCAGGTGGGTCTCACGCTCTCCGACTCCCGCGGCAACCTCCCCGACCTCGGCACCCGCGGCGCCACGCGCTTCATCTGGGAGTTCAACTTCAACGACTTCGACGTGGCGCGTGACCCCCACGCTCCGGACTCGATCGAGCTCCTCCGCCGCCAGGGCATCGACTTCGACCGCAACAGGGCCGAGGGCGTCGACTCGGCGCGTTTCGCCGCGCTCATGATGACGTCGGGGCTCGTCTGCAACGACGCCGTCAGCTGGGTCACCTTCCACAGCGCGTACGACTTCGGCTACCTGGTCAAGATCCTCACGCGCCGGAACCTGCCGAGTGGCATGAAGGAGTTTCACAAAGTTCTCAGGGTGTTTTTCGGGAATAGAATTTACGACATCAAGCACATGATGCGGTTCTGTAAGAGCCTGTATGGTGGACTGGACCGGGTCGCCAGGACCTTGGAGGTGGACCGGGCCGTCGGGAAGTGCCACCAGGCCGGGTCAGATAGCTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGATGTGTATTTTGTAAATGATGGGCCGGAGCAGCACGCCGGAGTGTTGTACGGTCTCGAGGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000289 GO:0000291 GO:0000932 GO:0000956 GO:0002213 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

279

Amino Acids

31.89

Weight (kDa)

6.2

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	15 - 144	4.9e-11	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44260 AT5G22250
fragaria_vesca	FvH4_3g25960 FvH4_6g19860
malus_domestica	MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1
prunus_persica	Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1
pyrus_communis	pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120
rosa_chinensis	RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241
rosa_laevigata	RLG00000023855 RLG00000034481
rosa_roxburghii	Rroxscaffold_1G00034130 Rroxscaffold_6G00406420
rosa_rugosa	Rorug03G0147600 Rorug05G0235200
rosa_samantha	Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600
rosa_wichuraiana	Rw3G017960 Rw5G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	704
AatII	GACGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	567
AccB1I	GGYRCC	2 cut(s)	293, 302
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	225, 432
AccIII	TCCGGA	1 cut(s)	367
AclWI	GGATC	4 cut(s)	12, 28, 73, 535
AcsI	RAATTY	2 cut(s)	68, 615
AcyI	GRCGYC	4 cut(s)	303, 429, 464, 486
AfaI	GTAC	2 cut(s)	518, 821
AfiI	CCNNNNNNNGG	9 cut(s)	58, 64, 154, 244, 290, 367, 394, 418, 495
AgsI	TTSAA	2 cut(s)	328, 334
AjiI	CACGTC	2 cut(s)	346, 747
AjnI	CCWGG	5 cut(s)	57, 393, 531, 680, 720
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	76, 154, 184, 382, 495, 738
AluI	AGCT	6 cut(s)	76, 154, 184, 382, 495, 738
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	257, 830
AlwI	GGATC	4 cut(s)	12, 28, 73, 535
Ama87I	CYCGRG	1 cut(s)	827
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	6 cut(s)	48, 133, 420, 702, 723, 794
ApaI	GGGCCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	181, 802
ApoI	RAATTY	2 cut(s)	68, 615
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	8 cut(s)	232, 305, 312, 352, 442, 454, 515, 552
AsuC2I	CCSGG	4 cut(s)	132, 674, 701, 727
AsuHPI	GGTGA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	5 cut(s)	157, 208, 670, 684, 697
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	2 cut(s)	293, 302
BanII	GRGCYC	3 cut(s)	52, 384, 474
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	193, 814
BccI	CCATC	2 cut(s)	35, 785
BceAI	ACGGC	3 cut(s)	190, 473, 689
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	5 cut(s)	59, 395, 533, 682, 722
BcnI	CCSGG	4 cut(s)	132, 674, 701, 727
BcoDI	GTCTC	2 cut(s)	257, 830
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	567
BglI	GCCNNNNNGGC	2 cut(s)	174, 396
BisI	GCNGC	6 cut(s)	182, 274, 301, 391, 450, 803
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	6 cut(s)	183, 275, 302, 392, 451, 804
Bme1390I	CCNGG	9 cut(s)	59, 132, 395, 533, 674, 682, 701, 722, 727
Bme18I	GGWCC	5 cut(s)	157, 208, 670, 684, 697
BmeT110I	CYCGRG	1 cut(s)	827
BmgBI	CACGTC	2 cut(s)	346, 747
BmiI	GGNNCC	5 cut(s)	50, 159, 295, 304, 557
BmrFI	CCNGG	9 cut(s)	59, 132, 395, 533, 674, 682, 701, 722, 727
BmsI	GCATC	2 cut(s)	408, 627
BpiI	GAAGAC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	4 cut(s)	132, 674, 701, 727
BsaHI	GRCGYC	4 cut(s)	303, 429, 464, 486
BsaI	GGTCTC	2 cut(s)	257, 830
BsaJI	CCNNGG	8 cut(s)	114, 130, 271, 289, 298, 394, 423, 687
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	9 cut(s)	58, 64, 154, 244, 290, 367, 394, 418, 495
Bse1I	ACTGG	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	5 cut(s)	59, 395, 533, 682, 722
BseDI	CCNNGG	8 cut(s)	114, 130, 271, 289, 298, 394, 423, 687
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	9 cut(s)	58, 64, 154, 244, 290, 367, 394, 418, 495
BseMII	CTCAG	2 cut(s)	247, 607
BseNI	ACTGG	1 cut(s)	672
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	193, 814
BseYI	CCCAGC	3 cut(s)	20, 150, 495
Bsh1285I	CGRYCG	3 cut(s)	93, 378, 412
BshFI	GGCC	6 cut(s)	50, 135, 422, 704, 725, 796
BshNI	GGYRCC	2 cut(s)	293, 302
BsiEI	CGRYCG	3 cut(s)	93, 378, 412
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	8 cut(s)	132, 368, 553, 673, 700, 726, 797, 810
BsiWI	CGTACG	1 cut(s)	516
BslI	CCNNNNNNNGG	9 cut(s)	58, 64, 154, 244, 290, 367, 394, 418, 495
BsmAI	GTCTC	2 cut(s)	257, 830
BsnI	GGCC	6 cut(s)	50, 135, 422, 704, 725, 796
Bso31I	GGTCTC	2 cut(s)	257, 830
BsoBI	CYCGRG	1 cut(s)	827
Bsp120I	GGGCCC	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	52, 384, 474
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
Bsp1720I	GCTNAGC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	6 cut(s)	50, 135, 422, 704, 725, 796
BspCNI	CTCAG	2 cut(s)	246, 606
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	5 cut(s)	50, 159, 295, 304, 557
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	4 cut(s)	12, 28, 73, 535
BspT107I	GGYRCC	2 cut(s)	293, 302
BspTNI	GGTCTC	2 cut(s)	257, 830
BsrI	ACTGG	1 cut(s)	672
BssECI	CCNNGG	8 cut(s)	114, 130, 271, 289, 298, 394, 423, 687
BssMI	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
BssNI	GRCGYC	4 cut(s)	303, 429, 464, 486
BssT1I	CCWWGG	2 cut(s)	114, 687
Bst2UI	CCWGG	5 cut(s)	59, 395, 533, 682, 722
Bst4CI	ACNGT	1 cut(s)	824
BstACI	GRCGYC	4 cut(s)	303, 429, 464, 486
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	4 cut(s)	179, 740, 753, 807
BstDEI	CTNAG	2 cut(s)	233, 593
BstDSI	CCRYGG	3 cut(s)	114, 271, 298
BstEII	GGTNACC	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	778
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	8 cut(s)	232, 305, 312, 352, 442, 454, 515, 552
BstKTI	GATC	7 cut(s)	7, 36, 81, 93, 199, 378, 543
BstMAI	GTCTC	2 cut(s)	257, 830
BstMBI	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
BstMCI	CGRYCG	3 cut(s)	93, 378, 412
BstMWI	GCNNNNNNNGC	8 cut(s)	174, 300, 309, 396, 446, 637, 748, 802
BstNI	CCWGG	5 cut(s)	59, 395, 533, 682, 722
BstNSI	RCATGY	1 cut(s)	755
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	9 cut(s)	57, 130, 393, 531, 672, 680, 699, 720, 725
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	193, 814
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	540
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	6 cut(s)	50, 135, 422, 704, 725, 796
BtgI	CCRYGG	3 cut(s)	114, 271, 298
BtrI	CACGTC	2 cut(s)	346, 747
BtsCI	GGATG	1 cut(s)	778
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	4 cut(s)	179, 740, 753, 807
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	8 cut(s)	232, 305, 312, 352, 442, 454, 515, 552
Cfr42I	CCGCGG	2 cut(s)	274, 301
CseI	GACGC	4 cut(s)	71, 236, 418, 494
CsiI	ACCWGGT	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	517, 820
CviAII	CATG	5 cut(s)	115, 457, 571, 634, 752
CviQI	GTAC	2 cut(s)	517, 820
DdeI	CTNAG	2 cut(s)	233, 593
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	7 cut(s)	6, 35, 80, 92, 198, 377, 542
DpnII	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
DrdI	GACNNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	704
EciI	GGCGGA	3 cut(s)	134, 176, 377
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	114, 687
Eco24I	GRGCYC	3 cut(s)	52, 384, 474
Eco31I	GGTCTC	2 cut(s)	257, 830
Eco47I	GGWCC	5 cut(s)	157, 208, 670, 684, 697
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	208, 684
EcoO65I	GGTNACC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	5 cut(s)	57, 393, 531, 680, 720
EcoT14I	CCWWGG	2 cut(s)	114, 687
EcoT38I	GRGCYC	3 cut(s)	52, 384, 474
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
ErhI	CCWWGG	2 cut(s)	114, 687
FaeI	CATG	5 cut(s)	118, 460, 574, 637, 755
FaiI	YATR	6 cut(s)	116, 458, 572, 635, 660, 753
FatI	CATG	5 cut(s)	114, 456, 570, 633, 751
FauI	CCCGC	3 cut(s)	173, 278, 305
FblI	GTMKAC	2 cut(s)	225, 432
Fnu4HI	GCNGC	6 cut(s)	182, 274, 301, 391, 450, 803
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	3 cut(s)	52, 384, 474
Fsp4HI	GCNGC	6 cut(s)	182, 274, 301, 391, 450, 803
GlaI	GCGC	8 cut(s)	231, 304, 311, 351, 441, 453, 514, 551
GluI	GCNGC	6 cut(s)	182, 274, 301, 391, 450, 803
GsaI	CCCAGC	3 cut(s)	24, 154, 499
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	6 cut(s)	50, 135, 422, 704, 725, 796
HapII	CCGG	8 cut(s)	132, 368, 553, 673, 700, 726, 797, 810
HgaI	GACGC	4 cut(s)	71, 236, 418, 494
HhaI	GCGC	8 cut(s)	232, 305, 312, 352, 442, 454, 515, 552
Hin1I	GRCGYC	4 cut(s)	303, 429, 464, 486
Hin1II	CATG	5 cut(s)	118, 460, 574, 637, 755
Hin6I	GCGC	8 cut(s)	230, 303, 310, 350, 440, 452, 513, 550
HinP1I	GCGC	8 cut(s)	230, 303, 310, 350, 440, 452, 513, 550
HincII	GTYRAC	2 cut(s)	226, 433
HindII	GTYRAC	2 cut(s)	226, 433
HinfI	GANTC	4 cut(s)	241, 266, 371, 434
HpaII	CCGG	8 cut(s)	132, 368, 553, 673, 700, 726, 797, 810
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	4 cut(s)	226, 433, 665, 697
Hpy188I	TCNGA	4 cut(s)	196, 265, 733, 762
Hpy188III	TCNNGA	8 cut(s)	31, 82, 368, 457, 538, 607, 709, 827
Hpy8I	GTNNAC	4 cut(s)	226, 433, 665, 697
Hpy99I	CGWCG	8 cut(s)	98, 227, 230, 347, 434, 469, 488, 710
HpyAV	CCTTC	2 cut(s)	514, 568
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	4 cut(s)	222, 345, 464, 746
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	8 cut(s)	174, 300, 309, 396, 446, 637, 748, 802
HpyF3I	CTNAG	2 cut(s)	233, 593
HpySE526I	ACGT	4 cut(s)	222, 345, 464, 746
Hsp92I	GRCGYC	4 cut(s)	303, 429, 464, 486
Hsp92II	CATG	5 cut(s)	118, 460, 574, 637, 755
HspAI	GCGC	8 cut(s)	230, 303, 310, 350, 440, 452, 513, 550
KasI	GGCGCC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	367
KspI	CCGCGG	2 cut(s)	274, 301
Kzo9I	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
LmnI	GCTCC	4 cut(s)	189, 370, 387, 799
Lsp1109I	GCAGC	2 cut(s)	193, 814
LweI	GCATC	2 cut(s)	408, 627
MabI	ACCWGGT	1 cut(s)	531
MaeII	ACGT	4 cut(s)	222, 345, 464, 746
MaeIII	GTNAC	2 cut(s)	353, 499
MalI	GATC	7 cut(s)	6, 35, 80, 92, 198, 377, 542
MboI	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
MboII	GAAGA	2 cut(s)	133, 775
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	3 cut(s)	52, 384, 474
MluCI	AATT	2 cut(s)	68, 615
Mly113I	GGCGCC	1 cut(s)	303
MlyI	GAGTC	3 cut(s)	260, 365, 428
MmeI	TCCRAC	2 cut(s)	243, 288
MroI	TCCGGA	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	4 cut(s)	154, 273, 300, 495
MspI	CCGG	8 cut(s)	132, 368, 553, 673, 700, 726, 797, 810
MspR9I	CCNGG	9 cut(s)	59, 132, 395, 533, 674, 682, 701, 722, 727
MvaI	CCWGG	5 cut(s)	59, 395, 533, 682, 722
MwoI	GCNNNNNNNGC	8 cut(s)	174, 300, 309, 396, 446, 637, 748, 802
NarI	GGCGCC	1 cut(s)	303
NciI	CCSGG	4 cut(s)	132, 674, 701, 727
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
NlaIII	CATG	5 cut(s)	118, 460, 574, 637, 755
NlaIV	GGNNCC	5 cut(s)	50, 159, 295, 304, 557
NmeAIII	GCCGAG	4 cut(s)	270, 416, 448, 588
NmuCI	GTSAC	2 cut(s)	353, 499
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	827
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 93, 342, 480, 752
PfeI	GAWTC	1 cut(s)	241
Pfl23II	CGTACG	1 cut(s)	516
PflFI	GACNNNGTC	2 cut(s)	488, 674
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	183, 275, 302, 392, 451, 804
Ple19I	CGATCG	2 cut(s)	93, 378
PleI	GAGTC	3 cut(s)	260, 365, 428
PluTI	GGCGCC	1 cut(s)	306
PpsI	GAGTC	3 cut(s)	260, 365, 428
PpuMI	RGGWCCY	2 cut(s)	208, 684
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	2 cut(s)	208, 684
Psp6I	CCWGG	5 cut(s)	57, 393, 531, 680, 720
PspEI	GGTNACC	1 cut(s)	499
PspFI	CCCAGC	3 cut(s)	20, 150, 495
PspGI	CCWGG	5 cut(s)	57, 393, 531, 680, 720
PspLI	CGTACG	1 cut(s)	516
PspN4I	GGNNCC	5 cut(s)	50, 159, 295, 304, 557
PspOMI	GGGCCC	1 cut(s)	48
PspPPI	RGGWCCY	2 cut(s)	208, 684
PsuI	RGATCY	1 cut(s)	540
PsyI	GACNNNGTC	2 cut(s)	488, 674
PvuI	CGATCG	2 cut(s)	93, 378
PvuII	CAGCTG	2 cut(s)	154, 495
RsaI	GTAC	2 cut(s)	518, 821
RsaNI	GTAC	2 cut(s)	517, 820
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	384
SacII	CCGCGG	2 cut(s)	274, 301
SalI	GTCGAC	2 cut(s)	224, 431
SatI	GCNGC	6 cut(s)	182, 274, 301, 391, 450, 803
Sau3AI	GATC	7 cut(s)	4, 33, 78, 90, 196, 375, 540
SchI	GAGTC	3 cut(s)	260, 365, 428
ScrFI	CCNGG	9 cut(s)	59, 132, 395, 533, 674, 682, 701, 722, 727
SduI	GDGCHC	3 cut(s)	52, 384, 474
SexAI	ACCWGGT	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	408, 627
SfoI	GGCGCC	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	827
Sfr303I	CCGCGG	2 cut(s)	274, 301
SgrBI	CCGCGG	2 cut(s)	274, 301
SgrDI	CGTCGACG	1 cut(s)	224
SinI	GGWCC	5 cut(s)	157, 208, 670, 684, 697
SlaI	CTCGAG	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	212, 827
SmoI	CTYRAG	2 cut(s)	212, 827
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	2 cut(s)	68, 615
SspDI	GGCGCC	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	9 cut(s)	57, 130, 393, 531, 672, 680, 699, 720, 725
StyI	CCWWGG	2 cut(s)	114, 687
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	4 cut(s)	225, 348, 467, 749
TasI	AATT	2 cut(s)	68, 615
TauI	GCSGC	4 cut(s)	276, 303, 393, 452
TfiI	GAWTC	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	353, 499
TseI	GCWGC	2 cut(s)	181, 802
Tsp45I	GTSAC	2 cut(s)	353, 499
TspDTI	ATGAA	2 cut(s)	304, 587
TspGWI	ACGGA	1 cut(s)	26
Tth111I	GACNNNGTC	2 cut(s)	488, 674
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	5 cut(s)	157, 208, 670, 684, 697
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	68, 615
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	827
XmiI	GTMKAC	2 cut(s)	225, 432
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.