CCR4-associated factor 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44260 AT5G22250 |
| fragaria_vesca | FvH4_3g25960 FvH4_6g19860 |
| malus_domestica | MD03G1152000.v1.1 MD03G1152100.v1.1 MD11G1172400.v1.1 MD12G1034100.v1.1 |
| prunus_persica | Prupe.6G139200_v2.0.a1 Prupe.6G139300_v2.0.a1 Prupe.6G139800_v2.0.a1 Prupe.7G098700_v2.0.a1 |
| pyrus_communis | pycom03g10580 pycom05g09910 pycom11g14510 pycom12g03160 pycom14g03120 |
| rosa_chinensis | RchiOBHm_Chr3g0475261 RchiOBHm_Chr5g0047241 |
| rosa_laevigata | RLG00000023855 RLG00000034481 |
| rosa_roxburghii | Rroxscaffold_1G00034130 Rroxscaffold_6G00406420 |
| rosa_rugosa | Rorug03G0147600 Rorug05G0235200 |
| rosa_samantha | Rh3AG197500 Rh3BG227800 Rh3DG223000 Rh5AG314100 Rh5CG349900 Rh5DG333600 |
| rosa_wichuraiana | Rw3G017960 Rw5G029350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AatII | GACGTC | 1 cut(s) | 345 |
| Acc65I | GGTACC | 1 cut(s) | 525 |
| AccB1I | GGYRCC | 1 cut(s) | 525 |
| AccI | GTMKAC | 1 cut(s) | 225 |
| AccII | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| AciI | CCGC | 5 cut(s) | 385, 409, 646, 710, 818 |
| AclI | AACGTT | 1 cut(s) | 691 |
| AclWI | GGATC | 4 cut(s) | 24, 46, 434, 637 |
| AcoI | YGGCCR | 2 cut(s) | 547, 837 |
| AcsI | RAATTY | 1 cut(s) | 86 |
| AcuI | CTGAAG | 1 cut(s) | 313 |
| AcyI | GRCGYC | 3 cut(s) | 228, 267, 342 |
| AfaI | GTAC | 4 cut(s) | 5, 515, 527, 665 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 244, 290, 391, 421 |
| AflIII | ACRYGT | 1 cut(s) | 347 |
| AgeI | ACCGGT | 1 cut(s) | 414 |
| AgsI | TTSAA | 3 cut(s) | 325, 571, 592 |
| AjiI | CACGTC | 1 cut(s) | 631 |
| AjnI | CCWGG | 3 cut(s) | 243, 390, 726 |
| AluBI | AGCT | 4 cut(s) | 30, 309, 492, 744 |
| AluI | AGCT | 4 cut(s) | 30, 309, 492, 744 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| AlwI | GGATC | 4 cut(s) | 24, 46, 434, 637 |
| AoxI | GGCC | 7 cut(s) | 66, 151, 250, 435, 547, 729, 837 |
| ApaI | GGGCCC | 1 cut(s) | 70 |
| ApeKI | GCWGC | 4 cut(s) | 166, 387, 446, 451 |
| ApoI | RAATTY | 1 cut(s) | 86 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 207, 239 |
| AsiGI | ACCGGT | 1 cut(s) | 414 |
| Asp718I | GGTACC | 1 cut(s) | 525 |
| AspLEI | GCGC | 3 cut(s) | 104, 451, 512 |
| AspS9I | GGNCC | 5 cut(s) | 66, 67, 151, 417, 436 |
| AsuC2I | CCSGG | 3 cut(s) | 150, 439, 707 |
| AsuHPI | GGTGA | 2 cut(s) | 247, 712 |
| AsuII | TTCGAA | 1 cut(s) | 90 |
| AvaII | GGWCC | 1 cut(s) | 417 |
| BaeGI | GKGCMC | 1 cut(s) | 70 |
| BanI | GGYRCC | 1 cut(s) | 525 |
| BanII | GRGCYC | 3 cut(s) | 32, 70, 471 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BbvI | GCAGC | 4 cut(s) | 178, 399, 433, 438 |
| BccI | CCATC | 3 cut(s) | 53, 380, 650 |
| BceAI | ACGGC | 4 cut(s) | 89, 154, 289, 824 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 385, 419 |
| BciT130I | CCWGG | 3 cut(s) | 245, 392, 728 |
| BcnI | CCSGG | 3 cut(s) | 150, 439, 707 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BisI | GCNGC | 4 cut(s) | 167, 388, 447, 452 |
| BlsI | GCNGC | 4 cut(s) | 168, 389, 448, 453 |
| Bme1390I | CCNGG | 6 cut(s) | 150, 245, 392, 439, 707, 728 |
| Bme18I | GGWCC | 1 cut(s) | 417 |
| BmgBI | CACGTC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 5 cut(s) | 66, 67, 151, 417, 436 |
| BmiI | GGNNCC | 3 cut(s) | 68, 295, 527 |
| BmrFI | CCNGG | 6 cut(s) | 150, 245, 392, 439, 707, 728 |
| BmsI | GCATC | 1 cut(s) | 405 |
| Bpu14I | TTCGAA | 1 cut(s) | 90 |
| BpuMI | CCSGG | 3 cut(s) | 150, 439, 707 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaHI | GRCGYC | 3 cut(s) | 228, 267, 342 |
| BsaJI | CCNNGG | 6 cut(s) | 132, 271, 289, 391, 420, 840 |
| BsaWI | WCCGGW | 1 cut(s) | 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 244, 290, 391, 421 |
| Bse118I | RCCGGY | 3 cut(s) | 414, 545, 731 |
| BseBI | CCWGG | 3 cut(s) | 245, 392, 728 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseDI | CCNNGG | 6 cut(s) | 132, 271, 289, 391, 420, 840 |
| BseGI | GGATG | 1 cut(s) | 240 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 244, 290, 391, 421 |
| BseRI | GAGGAG | 4 cut(s) | 286, 289, 371, 596 |
| BseSI | GKGCMC | 1 cut(s) | 70 |
| BseXI | GCAGC | 4 cut(s) | 178, 399, 433, 438 |
| BseYI | CCCAGC | 1 cut(s) | 492 |
| Bsh1236I | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| Bsh1285I | CGRYCG | 2 cut(s) | 409, 714 |
| BshFI | GGCC | 7 cut(s) | 68, 153, 252, 437, 549, 731, 839 |
| BshNI | GGYRCC | 1 cut(s) | 525 |
| BshTI | ACCGGT | 1 cut(s) | 414 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiEI | CGRYCG | 2 cut(s) | 409, 714 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BsiSI | CCGG | 8 cut(s) | 55, 149, 163, 415, 439, 546, 706, 732 |
| BsiWI | CGTACG | 1 cut(s) | 513 |
| BslFI | GGGAC | 1 cut(s) | 706 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 244, 290, 391, 421 |
| BsmFI | GGGAC | 1 cut(s) | 706 |
| BsnI | GGCC | 7 cut(s) | 68, 153, 252, 437, 549, 731, 839 |
| Bsp119I | TTCGAA | 1 cut(s) | 90 |
| Bsp120I | GGGCCC | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 3 cut(s) | 32, 70, 471 |
| Bsp143I | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| Bsp19I | CCATGG | 1 cut(s) | 132 |
| BspACI | CCGC | 5 cut(s) | 385, 409, 646, 710, 818 |
| BspANI | GGCC | 7 cut(s) | 68, 153, 252, 437, 549, 731, 839 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspFNI | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| BspLI | GGNNCC | 3 cut(s) | 68, 295, 527 |
| BspPI | GGATC | 4 cut(s) | 24, 46, 434, 637 |
| BspT104I | TTCGAA | 1 cut(s) | 90 |
| BspT107I | GGYRCC | 1 cut(s) | 525 |
| BsrFI | RCCGGY | 3 cut(s) | 414, 545, 731 |
| BssAI | RCCGGY | 3 cut(s) | 414, 545, 731 |
| BssECI | CCNNGG | 6 cut(s) | 132, 271, 289, 391, 420, 840 |
| BssMI | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| BssNI | GRCGYC | 3 cut(s) | 228, 267, 342 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 3 cut(s) | 245, 392, 728 |
| BstACI | GRCGYC | 3 cut(s) | 228, 267, 342 |
| BstBI | TTCGAA | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 3 cut(s) | 551, 746, 816 |
| BstDSI | CCRYGG | 3 cut(s) | 132, 271, 840 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 1 cut(s) | 240 |
| BstFNI | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| BstHHI | GCGC | 3 cut(s) | 104, 451, 512 |
| BstKTI | GATC | 5 cut(s) | 19, 54, 199, 429, 645 |
| BstMBI | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| BstMCI | CGRYCG | 2 cut(s) | 409, 714 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 393, 443, 754 |
| BstNI | CCWGG | 3 cut(s) | 245, 392, 728 |
| BstSCI | CCNGG | 6 cut(s) | 148, 243, 390, 437, 705, 726 |
| BstSLI | GKGCMC | 1 cut(s) | 70 |
| BstUI | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| BstV1I | GCAGC | 4 cut(s) | 178, 399, 433, 438 |
| BstX2I | RGATCY | 1 cut(s) | 51 |
| BstYI | RGATCY | 1 cut(s) | 51 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuRI | GGCC | 7 cut(s) | 68, 153, 252, 437, 549, 731, 839 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtgI | CCRYGG | 3 cut(s) | 132, 271, 840 |
| BtgZI | GCGATG | 1 cut(s) | 358 |
| BtrI | CACGTC | 1 cut(s) | 631 |
| BtsCI | GGATG | 1 cut(s) | 240 |
| Cac8I | GCNNGC | 3 cut(s) | 551, 746, 816 |
| CfoI | GCGC | 3 cut(s) | 104, 451, 512 |
| Cfr10I | RCCGGY | 3 cut(s) | 414, 545, 731 |
| Cfr13I | GGNCC | 5 cut(s) | 66, 67, 151, 417, 436 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| CpoI | CGGWCCG | 1 cut(s) | 417 |
| CseI | GACGC | 2 cut(s) | 236, 275 |
| Csp6I | GTAC | 4 cut(s) | 4, 514, 526, 664 |
| CspAI | ACCGGT | 1 cut(s) | 414 |
| CspI | CGGWCCG | 1 cut(s) | 417 |
| CviAII | CATG | 3 cut(s) | 33, 133, 640 |
| CviQI | GTAC | 4 cut(s) | 4, 514, 526, 664 |
| DpnI | GATC | 5 cut(s) | 18, 53, 198, 428, 644 |
| DpnII | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| EaeI | YGGCCR | 2 cut(s) | 547, 837 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco24I | GRGCYC | 3 cut(s) | 32, 70, 471 |
| Eco47I | GGWCC | 1 cut(s) | 417 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| Eco57I | CTGAAG | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 242 |
| EcoRI | GAATTC | 1 cut(s) | 86 |
| EcoRII | CCWGG | 3 cut(s) | 243, 390, 726 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 3 cut(s) | 32, 70, 471 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 3 cut(s) | 36, 136, 643 |
| FaqI | GGGAC | 1 cut(s) | 706 |
| FatI | CATG | 3 cut(s) | 32, 132, 639 |
| FauI | CCCGC | 1 cut(s) | 811 |
| FauNDI | CATATG | 1 cut(s) | 314 |
| FblI | GTMKAC | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 4 cut(s) | 167, 388, 447, 452 |
| FokI | GGATG | 1 cut(s) | 227 |
| FriOI | GRGCYC | 3 cut(s) | 32, 70, 471 |
| Fsp4HI | GCNGC | 4 cut(s) | 167, 388, 447, 452 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GlaI | GCGC | 3 cut(s) | 103, 450, 511 |
| GluI | GCNGC | 4 cut(s) | 167, 388, 447, 452 |
| GsaI | CCCAGC | 1 cut(s) | 496 |
| HaeIII | GGCC | 7 cut(s) | 68, 153, 252, 437, 549, 731, 839 |
| HapII | CCGG | 8 cut(s) | 55, 149, 163, 415, 439, 546, 706, 732 |
| HgaI | GACGC | 2 cut(s) | 236, 275 |
| HhaI | GCGC | 3 cut(s) | 104, 451, 512 |
| Hin1I | GRCGYC | 3 cut(s) | 228, 267, 342 |
| Hin1II | CATG | 3 cut(s) | 36, 136, 643 |
| Hin6I | GCGC | 3 cut(s) | 102, 449, 510 |
| HinP1I | GCGC | 3 cut(s) | 102, 449, 510 |
| HincII | GTYRAC | 1 cut(s) | 226 |
| HindII | GTYRAC | 1 cut(s) | 226 |
| HinfI | GANTC | 5 cut(s) | 80, 208, 368, 431, 482 |
| HpaII | CCGG | 8 cut(s) | 55, 149, 163, 415, 439, 546, 706, 732 |
| HphI | GGTGA | 2 cut(s) | 247, 712 |
| Hpy166II | GTNNAC | 3 cut(s) | 226, 625, 703 |
| Hpy188I | TCNGA | 8 cut(s) | 39, 85, 196, 265, 421, 614, 739, 833 |
| Hpy188III | TCNNGA | 5 cut(s) | 49, 365, 475, 535, 715 |
| Hpy8I | GTNNAC | 3 cut(s) | 226, 625, 703 |
| Hpy99I | CGWCG | 6 cut(s) | 116, 227, 230, 269, 344, 632 |
| HpyAV | CCTTC | 1 cut(s) | 201 |
| HpyCH4IV | ACGT | 8 cut(s) | 6, 222, 342, 500, 630, 691, 752, 761 |
| HpyCH4V | TGCA | 1 cut(s) | 757 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 393, 443, 754 |
| HpySE526I | ACGT | 8 cut(s) | 6, 222, 342, 500, 630, 691, 752, 761 |
| Hsp92I | GRCGYC | 3 cut(s) | 228, 267, 342 |
| Hsp92II | CATG | 3 cut(s) | 36, 136, 643 |
| HspAI | GCGC | 3 cut(s) | 102, 449, 510 |
| KpnI | GGTACC | 1 cut(s) | 529 |
| Kzo9I | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| LmnI | GCTCC | 3 cut(s) | 299, 367, 676 |
| Lsp1109I | GCAGC | 4 cut(s) | 178, 399, 433, 438 |
| LweI | GCATC | 1 cut(s) | 405 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeII | ACGT | 8 cut(s) | 6, 222, 342, 500, 630, 691, 752, 761 |
| MaeIII | GTNAC | 3 cut(s) | 343, 350, 496 |
| MalI | GATC | 5 cut(s) | 18, 53, 198, 428, 644 |
| MboI | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| MfeI | CAATTG | 1 cut(s) | 554 |
| MflI | RGATCY | 1 cut(s) | 51 |
| MhlI | GDGCHC | 3 cut(s) | 32, 70, 471 |
| MluCI | AATT | 6 cut(s) | 73, 86, 92, 554, 594, 793 |
| MluI | ACGCGT | 1 cut(s) | 347 |
| MlyI | GAGTC | 3 cut(s) | 202, 362, 491 |
| MmeI | TCCRAC | 3 cut(s) | 243, 288, 654 |
| MseI | TTAA | 3 cut(s) | 774, 792, 847 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MspI | CCGG | 8 cut(s) | 55, 149, 163, 415, 439, 546, 706, 732 |
| MspR9I | CCNGG | 6 cut(s) | 150, 245, 392, 439, 707, 728 |
| MunI | CAATTG | 1 cut(s) | 554 |
| MvaI | CCWGG | 3 cut(s) | 245, 392, 728 |
| MvnI | CGCG | 4 cut(s) | 102, 349, 512, 818 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 393, 443, 754 |
| NciI | CCSGG | 3 cut(s) | 150, 439, 707 |
| NcoI | CCATGG | 1 cut(s) | 132 |
| NdeI | CATATG | 1 cut(s) | 314 |
| NdeII | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| NlaIII | CATG | 3 cut(s) | 36, 136, 643 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 295, 527 |
| NmeAIII | GCCGAG | 1 cut(s) | 270 |
| NmuCI | GTSAC | 3 cut(s) | 343, 350, 496 |
| NspV | TTCGAA | 1 cut(s) | 90 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 477, 758, 837 |
| PfeI | GAWTC | 2 cut(s) | 80, 431 |
| Pfl23II | CGTACG | 1 cut(s) | 513 |
| PinAI | ACCGGT | 1 cut(s) | 414 |
| PkrI | GCNGC | 4 cut(s) | 168, 389, 448, 453 |
| PleI | GAGTC | 3 cut(s) | 202, 362, 490 |
| PpsI | GAGTC | 3 cut(s) | 202, 362, 490 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| Psp1406I | AACGTT | 1 cut(s) | 691 |
| Psp6I | CCWGG | 3 cut(s) | 243, 390, 726 |
| PspFI | CCCAGC | 1 cut(s) | 492 |
| PspGI | CCWGG | 3 cut(s) | 243, 390, 726 |
| PspLI | CGTACG | 1 cut(s) | 513 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 295, 527 |
| PspOMI | GGGCCC | 1 cut(s) | 66 |
| PspPI | GGNCC | 5 cut(s) | 66, 67, 151, 417, 436 |
| PsuI | RGATCY | 1 cut(s) | 51 |
| RsaI | GTAC | 4 cut(s) | 5, 515, 527, 665 |
| RsaNI | GTAC | 4 cut(s) | 4, 514, 526, 664 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| Rsr2I | CGGWCCG | 1 cut(s) | 417 |
| RsrII | CGGWCCG | 1 cut(s) | 417 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| SalI | GTCGAC | 1 cut(s) | 224 |
| SaqAI | TTAA | 3 cut(s) | 774, 792, 847 |
| SatI | GCNGC | 4 cut(s) | 167, 388, 447, 452 |
| Sau3AI | GATC | 5 cut(s) | 16, 51, 196, 426, 642 |
| Sau96I | GGNCC | 5 cut(s) | 66, 67, 151, 417, 436 |
| SchI | GAGTC | 3 cut(s) | 202, 362, 491 |
| ScrFI | CCNGG | 6 cut(s) | 150, 245, 392, 439, 707, 728 |
| SduI | GDGCHC | 3 cut(s) | 32, 70, 471 |
| SfaNI | GCATC | 1 cut(s) | 405 |
| SfuI | TTCGAA | 1 cut(s) | 90 |
| SgrDI | CGTCGACG | 1 cut(s) | 224 |
| SinI | GGWCC | 1 cut(s) | 417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| Sse9I | AATT | 6 cut(s) | 73, 86, 92, 554, 594, 793 |
| SsiI | CCGC | 5 cut(s) | 385, 409, 646, 710, 818 |
| SspMI | CTAG | 1 cut(s) | 530 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| StyD4I | CCNGG | 6 cut(s) | 148, 243, 390, 437, 705, 726 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaiI | ACGT | 8 cut(s) | 9, 225, 345, 503, 633, 694, 755, 764 |
| TaqI | TCGA | 8 cut(s) | 26, 90, 111, 225, 339, 399, 405, 429 |
| TasI | AATT | 6 cut(s) | 73, 86, 92, 554, 594, 793 |
| TfiI | GAWTC | 2 cut(s) | 80, 431 |
| Tru1I | TTAA | 3 cut(s) | 774, 792, 847 |
| Tru9I | TTAA | 3 cut(s) | 774, 792, 847 |
| TseFI | GTSAC | 3 cut(s) | 343, 350, 496 |
| TseI | GCWGC | 4 cut(s) | 166, 387, 446, 451 |
| Tsp45I | GTSAC | 3 cut(s) | 343, 350, 496 |
| TspDTI | ATGAA | 1 cut(s) | 301 |
| TspGWI | ACGGA | 2 cut(s) | 155, 681 |
| VpaK11BI | GGWCC | 1 cut(s) | 417 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 242 |
| XapI | RAATTY | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 225 |
| XspI | CTAG | 1 cut(s) | 530 |
| ZraI | GACGTC | 1 cut(s) | 343 |