Prupe.6G139800_v2.0.a1

CCR4-associated factor 1 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
11332294 .. 11333534
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G139800.1

Sequence Viewer

Length: 849 bp
ATGTACGTCAATGAGGATCAAAGTTCGAGCTCATGTCCGAAGCCCATCAAGATCCGGCAAGTGTGGGCCCATAATTTAGAATCCGAATTCGAATTGATACGCGCCGTCATCGACGACTACACTTACATCTCCATGGACACGGAGTTTCCGGGCCTCATATTCCGGCAGCCGTATAGCCACGATTTACAGCCTTCCGATCACTACAAGACTCTCAAATCCAACGTCGACGCCCTCAACCTCATCCAGGTTGGCCTCACCTTGTCCGACGCCCACGGCAACCTCCCCGACCTCGGCTCCTCCTCCACCAGCTTCATATGGGAGTTCAACTTCAGCGACTTCGACGTCACGCGTGACCCCCACGCTCCCGACTCCATCGCCCTCCTCCGCAGCCAGGGCATCGACTTCGACCGCAACCGGTCCGAGGGGATCGATTCGGCCCGGTTCGCTGCGCTGCTGATGTCATCGGGGCTCGTCCTGAACGAGTCTGTGAGCTGGGTCACGTTCCATAGCGCGTACGACTTCGGGTACCTAGTCAAGATTTTGACCGGCCAGCAATTGCCAAGTGGCTTGAAAGACTTGGAGGAGTTTTTGAAAATTGTGAGGGTCTTTTTCGGAAATAGAGTTTACGACGTGAAGCACATGATCCGCTTCTGTGATGGCTTGTACGGAGGGTTGGAGCAAGTTGCGAAACGTTTGGAGGTGAACCGGGCGGTCGGGAAGTCCCACCAGGCCGGTTCAGATAGCTTGCTGACGTTGCATACGTTTCAGCAGATTAAGAAAAAGTGTTTTGTTAATTATGATGAGGTGGAGAAGCACGCGGGAAAGTTGTTCGGATTGGCCGTGGTTTAA

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

5.67

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 225
AccII CGCG 4 cut(s) 102, 349, 512, 818
AciI CCGC 5 cut(s) 385, 409, 646, 710, 818
AclI AACGTT 1 cut(s) 691
AclWI GGATC 4 cut(s) 24, 46, 434, 637
AcoI YGGCCR 2 cut(s) 547, 837
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 313
AcyI GRCGYC 3 cut(s) 228, 267, 342
AfaI GTAC 4 cut(s) 5, 515, 527, 665
AfiI CCNNNNNNNGG 4 cut(s) 244, 290, 391, 421
AflIII ACRYGT 1 cut(s) 347
AgeI ACCGGT 1 cut(s) 414
AgsI TTSAA 3 cut(s) 325, 571, 592
AjiI CACGTC 1 cut(s) 631
AjnI CCWGG 3 cut(s) 243, 390, 726
AluBI AGCT 4 cut(s) 30, 309, 492, 744
AluI AGCT 4 cut(s) 30, 309, 492, 744
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 4 cut(s) 24, 46, 434, 637
AoxI GGCC 7 cut(s) 66, 151, 250, 435, 547, 729, 837
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 4 cut(s) 166, 387, 446, 451
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsiGI ACCGGT 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 525
AspLEI GCGC 3 cut(s) 104, 451, 512
AspS9I GGNCC 5 cut(s) 66, 67, 151, 417, 436
AsuC2I CCSGG 3 cut(s) 150, 439, 707
AsuHPI GGTGA 2 cut(s) 247, 712
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 525
BanII GRGCYC 3 cut(s) 32, 70, 471
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 178, 399, 433, 438
BccI CCATC 3 cut(s) 53, 380, 650
BceAI ACGGC 4 cut(s) 89, 154, 289, 824
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 3 cut(s) 245, 392, 728
BcnI CCSGG 3 cut(s) 150, 439, 707
BfaI CTAG 1 cut(s) 530
BisI GCNGC 4 cut(s) 167, 388, 447, 452
BlsI GCNGC 4 cut(s) 168, 389, 448, 453
Bme1390I CCNGG 6 cut(s) 150, 245, 392, 439, 707, 728
Bme18I GGWCC 1 cut(s) 417
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 5 cut(s) 66, 67, 151, 417, 436
BmiI GGNNCC 3 cut(s) 68, 295, 527
BmrFI CCNGG 6 cut(s) 150, 245, 392, 439, 707, 728
BmsI GCATC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 90
BpuMI CCSGG 3 cut(s) 150, 439, 707
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 3 cut(s) 228, 267, 342
BsaJI CCNNGG 6 cut(s) 132, 271, 289, 391, 420, 840
BsaWI WCCGGW 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 290, 391, 421
Bse118I RCCGGY 3 cut(s) 414, 545, 731
BseBI CCWGG 3 cut(s) 245, 392, 728
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 6 cut(s) 132, 271, 289, 391, 420, 840
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 244, 290, 391, 421
BseRI GAGGAG 4 cut(s) 286, 289, 371, 596
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 4 cut(s) 178, 399, 433, 438
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 4 cut(s) 102, 349, 512, 818
Bsh1285I CGRYCG 2 cut(s) 409, 714
BshFI GGCC 7 cut(s) 68, 153, 252, 437, 549, 731, 839
BshNI GGYRCC 1 cut(s) 525
BshTI ACCGGT 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 429
BsiEI CGRYCG 2 cut(s) 409, 714
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 8 cut(s) 55, 149, 163, 415, 439, 546, 706, 732
BsiWI CGTACG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 4 cut(s) 244, 290, 391, 421
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 7 cut(s) 68, 153, 252, 437, 549, 731, 839
Bsp119I TTCGAA 1 cut(s) 90
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 32, 70, 471
Bsp143I GATC 5 cut(s) 16, 51, 196, 426, 642
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 5 cut(s) 385, 409, 646, 710, 818
BspANI GGCC 7 cut(s) 68, 153, 252, 437, 549, 731, 839
BspDI ATCGAT 1 cut(s) 429
BspFNI CGCG 4 cut(s) 102, 349, 512, 818
BspLI GGNNCC 3 cut(s) 68, 295, 527
BspPI GGATC 4 cut(s) 24, 46, 434, 637
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 525
BsrFI RCCGGY 3 cut(s) 414, 545, 731
BssAI RCCGGY 3 cut(s) 414, 545, 731
BssECI CCNNGG 6 cut(s) 132, 271, 289, 391, 420, 840
BssMI GATC 5 cut(s) 16, 51, 196, 426, 642
BssNI GRCGYC 3 cut(s) 228, 267, 342
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 245, 392, 728
BstACI GRCGYC 3 cut(s) 228, 267, 342
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 551, 746, 816
BstDSI CCRYGG 3 cut(s) 132, 271, 840
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 4 cut(s) 102, 349, 512, 818
BstHHI GCGC 3 cut(s) 104, 451, 512
BstKTI GATC 5 cut(s) 19, 54, 199, 429, 645
BstMBI GATC 5 cut(s) 16, 51, 196, 426, 642
BstMCI CGRYCG 2 cut(s) 409, 714
BstMWI GCNNNNNNNGC 3 cut(s) 393, 443, 754
BstNI CCWGG 3 cut(s) 245, 392, 728
BstSCI CCNGG 6 cut(s) 148, 243, 390, 437, 705, 726
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 4 cut(s) 102, 349, 512, 818
BstV1I GCAGC 4 cut(s) 178, 399, 433, 438
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 7 cut(s) 68, 153, 252, 437, 549, 731, 839
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 3 cut(s) 132, 271, 840
BtgZI GCGATG 1 cut(s) 358
BtrI CACGTC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 551, 746, 816
CfoI GCGC 3 cut(s) 104, 451, 512
Cfr10I RCCGGY 3 cut(s) 414, 545, 731
Cfr13I GGNCC 5 cut(s) 66, 67, 151, 417, 436
ClaI ATCGAT 1 cut(s) 429
CpoI CGGWCCG 1 cut(s) 417
CseI GACGC 2 cut(s) 236, 275
Csp6I GTAC 4 cut(s) 4, 514, 526, 664
CspAI ACCGGT 1 cut(s) 414
CspI CGGWCCG 1 cut(s) 417
CviAII CATG 3 cut(s) 33, 133, 640
CviQI GTAC 4 cut(s) 4, 514, 526, 664
DpnI GATC 5 cut(s) 18, 53, 198, 428, 644
DpnII GATC 5 cut(s) 16, 51, 196, 426, 642
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 2 cut(s) 547, 837
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 3 cut(s) 32, 70, 471
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 243, 390, 726
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 3 cut(s) 32, 70, 471
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 36, 136, 643
FaqI GGGAC 1 cut(s) 706
FatI CATG 3 cut(s) 32, 132, 639
FauI CCCGC 1 cut(s) 811
FauNDI CATATG 1 cut(s) 314
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 167, 388, 447, 452
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 3 cut(s) 32, 70, 471
Fsp4HI GCNGC 4 cut(s) 167, 388, 447, 452
FspBI CTAG 1 cut(s) 530
GlaI GCGC 3 cut(s) 103, 450, 511
GluI GCNGC 4 cut(s) 167, 388, 447, 452
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 7 cut(s) 68, 153, 252, 437, 549, 731, 839
HapII CCGG 8 cut(s) 55, 149, 163, 415, 439, 546, 706, 732
HgaI GACGC 2 cut(s) 236, 275
HhaI GCGC 3 cut(s) 104, 451, 512
Hin1I GRCGYC 3 cut(s) 228, 267, 342
Hin1II CATG 3 cut(s) 36, 136, 643
Hin6I GCGC 3 cut(s) 102, 449, 510
HinP1I GCGC 3 cut(s) 102, 449, 510
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 5 cut(s) 80, 208, 368, 431, 482
HpaII CCGG 8 cut(s) 55, 149, 163, 415, 439, 546, 706, 732
HphI GGTGA 2 cut(s) 247, 712
Hpy166II GTNNAC 3 cut(s) 226, 625, 703
Hpy188I TCNGA 8 cut(s) 39, 85, 196, 265, 421, 614, 739, 833
Hpy188III TCNNGA 5 cut(s) 49, 365, 475, 535, 715
Hpy8I GTNNAC 3 cut(s) 226, 625, 703
Hpy99I CGWCG 6 cut(s) 116, 227, 230, 269, 344, 632
HpyAV CCTTC 1 cut(s) 201
HpyCH4IV ACGT 8 cut(s) 6, 222, 342, 500, 630, 691, 752, 761
HpyCH4V TGCA 1 cut(s) 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 393, 443, 754
HpySE526I ACGT 8 cut(s) 6, 222, 342, 500, 630, 691, 752, 761
Hsp92I GRCGYC 3 cut(s) 228, 267, 342
Hsp92II CATG 3 cut(s) 36, 136, 643
HspAI GCGC 3 cut(s) 102, 449, 510
KpnI GGTACC 1 cut(s) 529
Kzo9I GATC 5 cut(s) 16, 51, 196, 426, 642
LmnI GCTCC 3 cut(s) 299, 367, 676
Lsp1109I GCAGC 4 cut(s) 178, 399, 433, 438
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 530
MaeII ACGT 8 cut(s) 6, 222, 342, 500, 630, 691, 752, 761
MaeIII GTNAC 3 cut(s) 343, 350, 496
MalI GATC 5 cut(s) 18, 53, 198, 428, 644
MboI GATC 5 cut(s) 16, 51, 196, 426, 642
MfeI CAATTG 1 cut(s) 554
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 32, 70, 471
MluCI AATT 6 cut(s) 73, 86, 92, 554, 594, 793
MluI ACGCGT 1 cut(s) 347
MlyI GAGTC 3 cut(s) 202, 362, 491
MmeI TCCRAC 3 cut(s) 243, 288, 654
MseI TTAA 3 cut(s) 774, 792, 847
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 8 cut(s) 55, 149, 163, 415, 439, 546, 706, 732
MspR9I CCNGG 6 cut(s) 150, 245, 392, 439, 707, 728
MunI CAATTG 1 cut(s) 554
MvaI CCWGG 3 cut(s) 245, 392, 728
MvnI CGCG 4 cut(s) 102, 349, 512, 818
MwoI GCNNNNNNNGC 3 cut(s) 393, 443, 754
NciI CCSGG 3 cut(s) 150, 439, 707
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 314
NdeII GATC 5 cut(s) 16, 51, 196, 426, 642
NlaIII CATG 3 cut(s) 36, 136, 643
NlaIV GGNNCC 3 cut(s) 68, 295, 527
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 343, 350, 496
NspV TTCGAA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 758, 837
PfeI GAWTC 2 cut(s) 80, 431
Pfl23II CGTACG 1 cut(s) 513
PinAI ACCGGT 1 cut(s) 414
PkrI GCNGC 4 cut(s) 168, 389, 448, 453
PleI GAGTC 3 cut(s) 202, 362, 490
PpsI GAGTC 3 cut(s) 202, 362, 490
Psp124BI GAGCTC 1 cut(s) 32
Psp1406I AACGTT 1 cut(s) 691
Psp6I CCWGG 3 cut(s) 243, 390, 726
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 3 cut(s) 243, 390, 726
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 3 cut(s) 68, 295, 527
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 5 cut(s) 66, 67, 151, 417, 436
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 4 cut(s) 5, 515, 527, 665
RsaNI GTAC 4 cut(s) 4, 514, 526, 664
RseI CAYNNNNRTG 1 cut(s) 131
Rsr2I CGGWCCG 1 cut(s) 417
RsrII CGGWCCG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 774, 792, 847
SatI GCNGC 4 cut(s) 167, 388, 447, 452
Sau3AI GATC 5 cut(s) 16, 51, 196, 426, 642
Sau96I GGNCC 5 cut(s) 66, 67, 151, 417, 436
SchI GAGTC 3 cut(s) 202, 362, 491
ScrFI CCNGG 6 cut(s) 150, 245, 392, 439, 707, 728
SduI GDGCHC 3 cut(s) 32, 70, 471
SfaNI GCATC 1 cut(s) 405
SfuI TTCGAA 1 cut(s) 90
SgrDI CGTCGACG 1 cut(s) 224
SinI GGWCC 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 6 cut(s) 73, 86, 92, 554, 594, 793
SsiI CCGC 5 cut(s) 385, 409, 646, 710, 818
SspMI CTAG 1 cut(s) 530
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 6 cut(s) 148, 243, 390, 437, 705, 726
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 8 cut(s) 9, 225, 345, 503, 633, 694, 755, 764
TaqI TCGA 8 cut(s) 26, 90, 111, 225, 339, 399, 405, 429
TasI AATT 6 cut(s) 73, 86, 92, 554, 594, 793
TfiI GAWTC 2 cut(s) 80, 431
Tru1I TTAA 3 cut(s) 774, 792, 847
Tru9I TTAA 3 cut(s) 774, 792, 847
TseFI GTSAC 3 cut(s) 343, 350, 496
TseI GCWGC 4 cut(s) 166, 387, 446, 451
Tsp45I GTSAC 3 cut(s) 343, 350, 496
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 2 cut(s) 155, 681
VpaK11BI GGWCC 1 cut(s) 417
XagI CCTNNNNNAGG 1 cut(s) 242
XapI RAATTY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 530
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.