FvH4_6g20551

WD repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005405
Physical Location & Seq
Forward (+)
14153158 .. 14155183
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20551.t1

Sequence Viewer

Length: 420 bp
ATGTCTGAACTTCTGAACCATTCCTCATCAGTCCAATCCTATCTCTATCTTACATTCATTGAAGGGAACTTTACAGAAGATTGCCAGGTGGCCTGCTCAACAAGCAGTGAGCGGAGAGCAAGTAGGAAGGATATGAGTGTCTCAGATCTGCCAAAGAAGGAGGGAAATGTACTTAAAGGGCATGAGGGAGCAATATTAGCAGCGAGGTTCAATAAAGACGGGAATTACTGCCTCAGCTGTGGGAAAGACCGAACCATCCGACTGTGGAACCCTCACCGTGGCATCCACATTAAAACCTACAAGTCCCATGGCCGTGAAGTCCGTGATGTCCATGTCACCTCAGACAACTCCAAATTATGTTCAGGTGGTGGTGACAGACAAATCTTCTATTGGGATGTGGCATCCGGTCGAGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

8.85

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 24 - 133 2.4e-10 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 29 - 138 3e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 43 - 133 3.6e-16 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 46 - 136 8.6e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 52 - 138 9.1e-16 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 53 - 137 9.1e-14 THOC3 beta-propeller domain
WDR55 PF24796 53 - 133 1e-05 WDR55
WD40_Prp19 PF24814 55 - 138 2e-11 Prp19 WD40 domain
WD40 PF00400 56 - 90 1.6e-09 WD domain, G-beta repeat
EIF3I PF24805 57 - 139 5.8e-15 EIF3I
WD40_WDHD1_1st PF24817 64 - 137 2.2e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 310
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 62, 211
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 2 cut(s) 90, 310
ApeKI GCWGC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 266, 328, 383
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 145
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 2 cut(s) 291, 410
Bpu10I CCTNAGC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 277, 307
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 277, 307
BseGI GGATG 4 cut(s) 255, 282, 400, 401
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 156, 247, 354
BseXI GCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 92, 312
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 92, 312
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 92, 312
BspCNI CTCAG 3 cut(s) 155, 246, 353
BspLI GGNNCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 277, 307
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 264, 278
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 142, 233, 340
BstDSI CCRYGG 2 cut(s) 277, 307
BstF5I GGATG 4 cut(s) 255, 282, 400, 401
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 102, 197
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 92, 312
BtgI CCRYGG 2 cut(s) 277, 307
BtsCI GGATG 4 cut(s) 255, 282, 400, 401
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 170
CviAII CATG 3 cut(s) 182, 308, 332
CviJI RGCY 3 cut(s) 92, 237, 312
CviKI_1 RGCY 3 cut(s) 92, 237, 312
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 142, 233, 340
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 185, 311, 335
FaiI YATR 5 cut(s) 134, 183, 309, 333, 358
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 181, 307, 331
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 4 cut(s) 242, 269, 388, 407
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 92, 312
HapII CCGG 1 cut(s) 405
Hin1II CATG 3 cut(s) 185, 311, 335
HinfI GANTC 1 cut(s) 411
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 266, 328, 383
Hpy188I TCNGA 5 cut(s) 7, 15, 145, 260, 343
HpyAV CCTTC 3 cut(s) 56, 121, 151
HpyCH4III ACNGT 2 cut(s) 264, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 197
HpyF3I CTNAG 3 cut(s) 142, 233, 340
Hsp92II CATG 3 cut(s) 185, 311, 335
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 71, 98, 106, 348
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 2 cut(s) 291, 410
MaeIII GTNAC 2 cut(s) 334, 371
MalI GATC 1 cut(s) 147
MbiI CCGCTC 1 cut(s) 112
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 89, 376
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 223, 353
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 7 cut(s) 34, 154, 178, 198, 242, 282, 349
MseI TTAA 2 cut(s) 174, 291
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 102, 197
NcoI CCATGG 1 cut(s) 307
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 185, 311, 335
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 2 cut(s) 334, 371
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 2 cut(s) 174, 291
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 86
SetI ASST 6 cut(s) 90, 209, 239, 299, 341, 367
SfaNI GCATC 2 cut(s) 291, 410
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 223, 353
SsiI CCGC 1 cut(s) 112
SspI AATATT 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 264, 278
TaqI TCGA 1 cut(s) 409
TaqII GACCGA 1 cut(s) 264
TasI AATT 2 cut(s) 223, 353
TatI WGTACW 1 cut(s) 169
Tru1I TTAA 2 cut(s) 174, 291
Tru9I TTAA 2 cut(s) 174, 291
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 334, 371
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 2 cut(s) 334, 371
TspDTI ATGAA 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.