Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005405

Physical Location & Seq

Genomic Coordinates Reverse (-)

15025141 .. 15028951

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGCGTGGCGGATCTGCCAAAGACAGAGGCGAACGTGCTGAGAGGCCACGAGGGGACAGTATTAGCAGCGAGGTTCAATAGTGACGGAAATTACTGCCTCAGCGCCGGGAAAGACCGAACCATCAGACTCTGGAACCCACACCGCGGCATCCACATCAAGACCTACAAGTCCCATGGCCGCGAAGTACGTGACGTTCATGTCACCTCGGACAACTCGAAATTGTGTTCTTGCGGTGGTGACAGACAAATCTTTTATTGGGATGTGGCGACGGGGAAAGTCATTCGAAAGTTTCGAGGTCATGAAGGGGAGGTGAATGCTGTGAAGTTCAATGAGTATTCATCTGTTGTGGTCTCGGCAGGTTTTGATCAGTCCTTGCGTGCTTGGGACTGCAGGTCTCACAGCAATGAACCCATTCAGATAATCGACACGTTTACAGACAGTGTAATGTCTGTTTGTTTAACAAAGACCGAAATTATTGGTGGAAGTGTTGATGGAACTGTGAGAACTTTCGATATGCGTATAGGGAGAGAAGTATCCGATGACTTGGGACAACCTGTAAACTGCATCTCAATGTCAAATGACGGTAACTGCATACTAGCCAGTTGCTTAGATTCGACTTTACGTCTCATTGACAGGTCTTCTGGTGAATTACTTCAACAATACAAAGGTCATACTTGTAAGTCTTACAAATTGGACTGCTGTATTACCAACACTGATGCCCATGTAACCGGTGGGTCTGAGGATGGCTTCATTTTCTTCTGGGATCTGGTAGATGCATCTGTGGCAACGAAGTTCAGAGCTCATTCGTCAGTGGTAACAAGTGTGAGTTATCACCCAAAGGACAACTGCATGATAAGTTCCTCTGTTGATGGCACCATTAAGGTGTGGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

300

Amino Acids

32.99

Weight (kDa)

6.59

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64730
fragaria_vesca	FvH4_1g23870 FvH4_6g20551
malus_domestica	MD15G1340800.v1.1
prunus_persica	Prupe.6G161500_v2.0.a1
pyrus_communis	pycom01g03350
rosa_chinensis	RchiOBHm_Chr2g0119791 RchiOBHm_Chr2g0119831 RchiOBHm_Chr6g0259141
rosa_laevigata	RLG00000014554 RLG00000014555 RLG00000018493
rosa_roxburghii	Rroxscaffold_2G00124070
rosa_rugosa	Rorug02G0223700 Rorug02G0223800
rosa_samantha	Rh1BG282400 Rh1DG313800 Rh2AG281500 Rh2BG293100 Rh2DG287900 Rh2DG307200 Rh6AG102100 Rh6AG102200 Rh6BG094400 Rh6CG091500 Rh6CG091600 Rh6DG085500 Rh6DG085600
rosa_wichuraiana	Rw2G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	169, 200
Acc36I	ACCTGC	2 cut(s)	350, 384
AccB1I	GGYRCC	1 cut(s)	875
AccII	CGCG	2 cut(s)	147, 183
AciI	CCGC	5 cut(s)	11, 145, 147, 181, 234
AclWI	GGATC	2 cut(s)	21, 774
AcoI	YGGCCR	1 cut(s)	178
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	429
AgeI	ACCGGT	1 cut(s)	731
AgsI	TTSAA	3 cut(s)	79, 331, 659
AhdI	GACNNNNNGTC	2 cut(s)	394, 624
AluBI	AGCT	1 cut(s)	803
AluI	AGCT	1 cut(s)	803
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	3 cut(s)	358, 402, 632
AlwI	GGATC	2 cut(s)	21, 774
AlwNI	CAGNNNCTG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	46, 178
ApeKI	GCWGC	1 cut(s)	68
AsiGI	ACCGGT	1 cut(s)	731
Asp700I	GAANNNNTTC	2 cut(s)	414, 654
AspLEI	GCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	5 cut(s)	196, 251, 325, 659, 827
AsuII	TTCGAA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	875
BanII	GRGCYC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	805
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	131, 488, 740, 866
BciVI	GTATCC	1 cut(s)	547
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	358, 402, 632
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	2 cut(s)	350, 384
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	3 cut(s)	69, 148, 181
BlsI	GCNGC	3 cut(s)	70, 149, 182
Bme1390I	CCNGG	1 cut(s)	109
BmeRI	GACNNNNNGTC	2 cut(s)	394, 624
BmiI	GGNNCC	2 cut(s)	137, 877
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	5 cut(s)	159, 576, 709, 766, 788
BpiI	GAAGAC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	191
BsaI	GGTCTC	2 cut(s)	358, 402
BsaJI	CCNNGG	3 cut(s)	145, 175, 207
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	145, 175, 207
BseGI	GGATG	3 cut(s)	150, 268, 751
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	32, 115, 732
BseNI	ACTGG	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	147, 183
BshFI	GGCC	2 cut(s)	48, 180
BshNI	GGYRCC	1 cut(s)	875
BshTI	ACCGGT	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	805
BsiSI	CCGG	2 cut(s)	108, 732
BslFI	GGGAC	4 cut(s)	70, 157, 401, 564
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	358, 402, 632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	4 cut(s)	70, 157, 401, 564
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	48, 180
Bso31I	GGTCTC	2 cut(s)	358, 402
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp143I	GATC	3 cut(s)	13, 367, 766
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	5 cut(s)	11, 145, 147, 181, 234
BspANI	GGCC	2 cut(s)	48, 180
BspCNI	CTCAG	3 cut(s)	33, 114, 733
BspFNI	CGCG	2 cut(s)	147, 183
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	137, 877
BspMAI	CTGCAG	1 cut(s)	395
BspMI	ACCTGC	2 cut(s)	350, 384
BspPI	GGATC	2 cut(s)	21, 774
BspT104I	TTCGAA	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	875
BspTNI	GGTCTC	2 cut(s)	358, 402
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	3 cut(s)	145, 175, 207
BssMI	GATC	3 cut(s)	13, 367, 766
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	50
Bst4CI	ACNGT	4 cut(s)	61, 443, 502, 587
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	41, 101, 610, 741
BstDSI	CCRYGG	2 cut(s)	145, 175
BstF5I	GGATG	3 cut(s)	150, 268, 751
BstFNI	CGCG	2 cut(s)	147, 183
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	16, 370, 769
BstMAI	GTCTC	3 cut(s)	358, 402, 632
BstMBI	GATC	3 cut(s)	13, 367, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	2 cut(s)	147, 183
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	13, 766
BstYI	RGATCY	2 cut(s)	13, 766
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	48, 180
BtgI	CCRYGG	2 cut(s)	145, 175
BtsCI	GGATG	3 cut(s)	150, 268, 751
BtsIMutI	CAGTG	3 cut(s)	448, 714, 819
BveI	ACCTGC	2 cut(s)	350, 384
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	132
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	731
Cfr42I	CCGCGG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	731
CviAII	CATG	5 cut(s)	176, 200, 302, 725, 853
CviJI	RGCY	5 cut(s)	48, 180, 602, 750, 803
CviKI_1	RGCY	5 cut(s)	48, 180, 602, 750, 803
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	4 cut(s)	41, 101, 610, 741
DpnI	GATC	3 cut(s)	15, 369, 768
DpnII	GATC	3 cut(s)	13, 367, 766
DrdI	GACNNNNNNGTC	2 cut(s)	169, 200
DriI	GACNNNNNGTC	2 cut(s)	394, 624
DseDI	GACNNNNNNGTC	2 cut(s)	169, 200
EaeI	YGGCCR	1 cut(s)	178
Eam1105I	GACNNNNNGTC	2 cut(s)	394, 624
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	2 cut(s)	358, 402
Eco53kI	GAGCTC	1 cut(s)	803
EcoICRI	GAGCTC	1 cut(s)	803
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	5 cut(s)	179, 203, 305, 728, 856
FaiI	YATR	9 cut(s)	177, 201, 303, 518, 524, 596, 675, 726, 854
FaqI	GGGAC	4 cut(s)	70, 157, 401, 564
FatI	CATG	5 cut(s)	175, 199, 301, 724, 852
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	69, 148, 181
FokI	GGATG	3 cut(s)	137, 275, 758
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	3 cut(s)	69, 148, 181
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	69, 148, 181
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	48, 180
HapII	CCGG	2 cut(s)	108, 732
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	179, 203, 305, 728, 856
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	129, 614
HpaII	CCGG	2 cut(s)	108, 732
HphI	GGTGA	5 cut(s)	196, 251, 325, 659, 827
Hpy166II	GTNNAC	2 cut(s)	435, 562
Hpy188I	TCNGA	6 cut(s)	128, 211, 420, 541, 742, 800
Hpy188III	TCNNGA	4 cut(s)	133, 160, 302, 897
Hpy8I	GTNNAC	2 cut(s)	435, 562
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	4 cut(s)	61, 443, 502, 587
HpyCH4IV	ACGT	5 cut(s)	36, 190, 195, 431, 625
HpyCH4V	TGCA	5 cut(s)	393, 567, 594, 779, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	4 cut(s)	41, 101, 610, 741
HpySE526I	ACGT	5 cut(s)	36, 190, 195, 431, 625
Hsp92II	CATG	5 cut(s)	179, 203, 305, 728, 856
HspAI	GCGC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	367
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	13, 367, 766
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	5 cut(s)	159, 576, 709, 766, 788
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	5 cut(s)	36, 190, 195, 431, 625
MaeIII	GTNAC	7 cut(s)	83, 191, 202, 239, 587, 727, 817
MalI	GATC	3 cut(s)	15, 369, 768
MboI	GATC	3 cut(s)	13, 367, 766
MboII	GAAGA	2 cut(s)	633, 751
MflI	RGATCY	2 cut(s)	13, 766
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	5 cut(s)	91, 221, 474, 650, 692
MlyI	GAGTC	1 cut(s)	123
Mph1103I	ATGCAT	1 cut(s)	781
MroXI	GAANNNNTTC	2 cut(s)	414, 654
MseI	TTAA	2 cut(s)	461, 882
MslI	CAYNNNNRTG	3 cut(s)	405, 572, 884
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	108, 732
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	322
MvnI	CGCG	2 cut(s)	147, 183
MwoI	GCNNNNNNNGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	13, 367, 766
NlaIII	CATG	5 cut(s)	179, 203, 305, 728, 856
NlaIV	GGNNCC	2 cut(s)	137, 877
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	4 cut(s)	83, 191, 202, 239
NsiI	ATGCAT	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	286
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 292
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	2 cut(s)	414, 654
PfeI	GAWTC	1 cut(s)	614
PinAI	ACCGGT	1 cut(s)	731
PkrI	GCNGC	3 cut(s)	70, 149, 182
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	805
PspN4I	GGNNCC	2 cut(s)	137, 877
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstI	CTGCAG	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	13, 766
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	3 cut(s)	405, 572, 884
SacI	GAGCTC	1 cut(s)	805
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	461, 882
SatI	GCNGC	3 cut(s)	69, 148, 181
Sau3AI	GATC	3 cut(s)	13, 367, 766
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	5 cut(s)	159, 576, 709, 766, 788
SfcI	CTRYAG	1 cut(s)	391
Sfr303I	CCGCGG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	148
SmiMI	CAYNNNNRTG	3 cut(s)	405, 572, 884
Sse9I	AATT	5 cut(s)	91, 221, 474, 650, 692
SsiI	CCGC	5 cut(s)	11, 145, 147, 181, 234
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	805
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	61, 443, 502, 587
TaiI	ACGT	5 cut(s)	39, 193, 198, 434, 628
TaqI	TCGA	6 cut(s)	218, 286, 295, 426, 513, 617
TaqII	GACCGA	2 cut(s)	132, 485
TasI	AATT	5 cut(s)	91, 221, 474, 650, 692
TauI	GCSGC	2 cut(s)	150, 183
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	2 cut(s)	461, 882
Tru9I	TTAA	2 cut(s)	461, 882
TscAI	CASTG	3 cut(s)	448, 721, 819
TseFI	GTSAC	4 cut(s)	83, 191, 202, 239
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	4 cut(s)	83, 191, 202, 239
TspDTI	ATGAA	5 cut(s)	188, 318, 330, 423, 742
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	3 cut(s)	448, 721, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmnI	GAANNNNTTC	2 cut(s)	414, 654
XspI	CTAG	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.