Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005405

Physical Location & Seq

Genomic Coordinates Forward (+)

21674657 .. 21678655

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0223700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTACGTCGCACTCTCATTGCTTGAAACGATATTCAAATGGACCCGAGGATTAGCTCTTTCAGCTGATCTTCATCCCTGGGAATATGATGTGTTTTTGAGTTTCACCGGAGAAACCCGCAAGGGTTTCTCAGACCACCTGTACCGTGCATTGAAGAGGCGAGGAGTCAATGTTTTCAGGGACCAACAACTTGAAAGAGGCACAACTCTTTCTTCAGAGCTCTTGACTGTGATCGAGGAGTCGAGGTTTGCAATCATCGTCCTCTCGCAACATTACGCTGCCTCCACTTGGTGTTTAGATGAACTTTCAAAAGTTTTTGAATGCATGGAAGTCAGGGGCACAATACTGCCCATTTTTTATAAGGTGAAGCCCTCCAATGTACGAAGACTAAGGGGAGCTTTTGCAAGAGCCTTCTACAAGCATGAATACACTAACATAGCAAAAGTGCAAAGATGGAGAAGTGCTTTTACAAGAGTGGGCGGTATCGCTGGATGGATATCAGATGAATGGTATGAGTCTGAGCTTATCGAAAAAATCGTAGACTGTGTGTGCGACGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

187

Amino Acids

21.73

Weight (kDa)

8.33

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	29 - 184	3.2e-43	TIR domain
TIR_2	PF13676	31 - 130	9.7e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64730
fragaria_vesca	FvH4_1g23870 FvH4_6g20551
malus_domestica	MD15G1340800.v1.1
prunus_persica	Prupe.6G161500_v2.0.a1
pyrus_communis	pycom01g03350
rosa_chinensis	RchiOBHm_Chr2g0119791 RchiOBHm_Chr2g0119831 RchiOBHm_Chr6g0259141
rosa_laevigata	RLG00000014554 RLG00000014555 RLG00000018493
rosa_roxburghii	Rroxscaffold_2G00124070
rosa_rugosa	Rorug02G0223700 Rorug02G0223800
rosa_samantha	Rh1BG282400 Rh1DG313800 Rh2AG281500 Rh2BG293100 Rh2DG287900 Rh2DG307200 Rh6AG102100 Rh6AG102200 Rh6BG094400 Rh6CG091500 Rh6CG091600 Rh6DG085500 Rh6DG085600
rosa_wichuraiana	Rw2G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	540
AciI	CCGC	2 cut(s)	118, 480
AcuI	CTGAAG	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	3 cut(s)	5, 143, 381
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	6 cut(s)	26, 37, 154, 194, 309, 320
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	5 cut(s)	56, 65, 220, 398, 523
AluI	AGCT	5 cut(s)	56, 65, 220, 398, 523
Alw21I	GWGCWC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	42, 181
AsuHPI	GGTGA	2 cut(s)	97, 376
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	42, 181
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	447, 486
BciT130I	CCWGG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	2 cut(s)	42, 181
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	42, 181
BmiI	GGNNCC	2 cut(s)	44, 182
BmrFI	CCNGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	391
BsaBI	GATNNNNATC	2 cut(s)	72, 496
BsaJI	CCNNGG	3 cut(s)	46, 77, 78
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	6 cut(s)	156, 186, 230, 260, 266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	17
Bse8I	GATNNNNATC	2 cut(s)	72, 496
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	46, 77, 78
BseGI	GGATG	2 cut(s)	73, 497
BseJI	GATNNNNATC	2 cut(s)	72, 496
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	144, 510
BseRI	GAGGAG	2 cut(s)	177, 251
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	222, 341
Bsp143I	GATC	2 cut(s)	67, 231
BspACI	CCGC	2 cut(s)	118, 480
BspCNI	CTCAG	2 cut(s)	143, 511
BspLI	GGNNCC	2 cut(s)	44, 182
BsrDI	GCAATG	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	46, 77, 78
BssMI	GATC	2 cut(s)	67, 231
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	3 cut(s)	146, 229, 545
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	130, 389, 519
BstF5I	GGATG	2 cut(s)	73, 497
BstKTI	GATC	2 cut(s)	70, 234
BstMBI	GATC	2 cut(s)	67, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	73, 497
Cfr13I	GGNCC	2 cut(s)	42, 181
Csp6I	GTAC	3 cut(s)	4, 142, 380
CviAII	CATG	2 cut(s)	325, 422
CviJI	RGCY	7 cut(s)	56, 65, 220, 370, 398, 410, 523
CviKI_1	RGCY	7 cut(s)	56, 65, 220, 370, 398, 410, 523
CviQI	GTAC	3 cut(s)	4, 142, 380
DdeI	CTNAG	3 cut(s)	130, 389, 519
DpnI	GATC	2 cut(s)	69, 233
DpnII	GATC	2 cut(s)	67, 231
DraIII	CACNNNGTG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	42, 181
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	328, 425
FaiI	YATR	6 cut(s)	87, 326, 360, 423, 437, 513
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	324, 421
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	60, 504
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	328, 425
HinfI	GANTC	3 cut(s)	165, 239, 515
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	97, 376
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	4 cut(s)	133, 217, 502, 520
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	2 cut(s)	11, 557
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	3 cut(s)	146, 229, 545
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	5 cut(s)	149, 251, 324, 404, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	130, 389, 519
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	328, 425
Kzo9I	GATC	2 cut(s)	67, 231
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	7 cut(s)	64, 91, 121, 152, 163, 319, 474
Lsp1109I	GCAGC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	69, 233
MboI	GATC	2 cut(s)	67, 231
MboII	GAAGA	4 cut(s)	62, 166, 204, 396
MhlI	GDGCHC	2 cut(s)	222, 341
MlyI	GAGTC	3 cut(s)	174, 248, 524
MnlI	CCTC	9 cut(s)	41, 150, 155, 191, 229, 237, 272, 292, 382
Mph1103I	ATGCAT	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	67, 231
NlaIII	CATG	2 cut(s)	328, 425
NlaIV	GGNNCC	2 cut(s)	44, 182
NsiI	ATGCAT	1 cut(s)	326
PasI	CCCWGGG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	3 cut(s)	173, 247, 523
PpsI	GAGTC	3 cut(s)	173, 247, 523
PsiI	TTATAA	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	44, 182
PspPI	GGNCC	2 cut(s)	42, 181
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	5, 143, 381
RsaNI	GTAC	3 cut(s)	4, 142, 380
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	67, 231
Sau96I	GGNCC	2 cut(s)	42, 181
SchI	GAGTC	3 cut(s)	174, 248, 524
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	222, 341
SetI	ASST	9 cut(s)	9, 58, 67, 141, 222, 248, 366, 400, 525
SinI	GGWCC	2 cut(s)	42, 181
SsiI	CCGC	2 cut(s)	118, 480
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	146, 229, 545
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	234, 242, 528
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	62, 315, 438, 519
VpaK11BI	GGWCC	2 cut(s)	42, 181
XmiI	GTMKAC	1 cut(s)	540
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.