Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005405

Physical Location & Seq

Genomic Coordinates Reverse (-)

38557858 .. 38559407

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1340800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCTGTCTGTTTGACAAAGACCAAAATTATTGGTGAGCTTACCGCAGTGATGCTTAATGTTGTATTATATAGAGAACTATCTGATGACTTGAGGCGACCTGTAAACTGCATCTCAATGTCAAATGATGGTAACTGCATACTCGCCGGCTGTTTAGATTCAATTTTACATCTGATTGATAGTTCTTATCAATTTCATTGGTTATTTTTCTGTACCAAATTGGACTGCTGCCTTACCAATACGGATGCCCATGTAACTGGTGGGTTGGAGAATGGTTACATTTTCTTCTGGGGTCTGGTAGATGCATGGGTGGCACCAAGTTTCAGAGCACATTCGTCAGTGATGTTGAATGCTCGTAGTGTCTCTTCCTATTTTACGTGTATAAAATTTGTACCTATGACTAATCCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

138

Amino Acids

15.28

Weight (kDa)

6.01

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64730
fragaria_vesca	FvH4_1g23870 FvH4_6g20551
malus_domestica	MD15G1340800.v1.1
prunus_persica	Prupe.6G161500_v2.0.a1
pyrus_communis	pycom01g03350
rosa_chinensis	RchiOBHm_Chr2g0119791 RchiOBHm_Chr2g0119831 RchiOBHm_Chr6g0259141
rosa_laevigata	RLG00000014554 RLG00000014555 RLG00000018493
rosa_roxburghii	Rroxscaffold_2G00124070
rosa_rugosa	Rorug02G0223700 Rorug02G0223800
rosa_samantha	Rh1BG282400 Rh1DG313800 Rh2AG281500 Rh2BG293100 Rh2DG287900 Rh2DG307200 Rh6AG102100 Rh6AG102200 Rh6BG094400 Rh6CG091500 Rh6CG091600 Rh6DG085500 Rh6DG085600
rosa_wichuraiana	Rw2G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	214, 393
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	162, 349
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	349, 381
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	4 cut(s)	42, 120, 235, 292
BpuEI	CTTGAG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 345
Cac8I	GCNNGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	213, 392
CviAII	CATG	2 cut(s)	251, 306
CviJI	RGCY	3 cut(s)	40, 150, 410
CviKI_1	RGCY	3 cut(s)	40, 150, 410
CviQI	GTAC	2 cut(s)	213, 392
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	2 cut(s)	254, 309
FaiI	YATR	7 cut(s)	70, 72, 140, 252, 307, 383, 398
FatI	CATG	2 cut(s)	250, 305
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	2 cut(s)	254, 309
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	85, 174, 326
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	111, 138, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	254, 309
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
LpnPI	CCDG	5 cut(s)	114, 160, 243, 274, 281
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	4 cut(s)	42, 120, 235, 292
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	131, 253, 275
MboII	GAAGA	2 cut(s)	277, 357
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	27, 162, 191, 218, 386
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	311
NaeI	GCCGGC	1 cut(s)	148
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	254, 309
NlaIV	GGNNCC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	315
RsaI	GTAC	2 cut(s)	214, 393
RsaNI	GTAC	2 cut(s)	213, 392
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	4 cut(s)	42, 103, 380, 397
SfaNI	GCATC	4 cut(s)	42, 120, 235, 292
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	5 cut(s)	27, 162, 191, 218, 386
SsiI	CCGC	1 cut(s)	45
TaiI	ACGT	1 cut(s)	380
TasI	AATT	5 cut(s)	27, 162, 191, 218, 386
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	54, 345
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	54, 345
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.