Rorug02G0223800

WD repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005405
Physical Location & Seq
Forward (+)
21692700 .. 21693508
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0223800.1

Sequence Viewer

Length: 720 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCCGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGATAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAATTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCCTGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGTCTCAACTCCTCCGGAGCTGCTGATTTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

239

Amino Acids

25.56

Weight (kDa)

4.97

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 2.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 698
AciI CCGC 3 cut(s) 41, 648, 657
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 599
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 4 cut(s) 116, 346, 564, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 31, 223, 434, 682, 704
AluI AGCT 5 cut(s) 31, 223, 434, 682, 704
Alw21I GWGCWC 2 cut(s) 201, 684
Alw26I GTCTC 2 cut(s) 221, 692
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 698
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 3 cut(s) 74, 317, 704
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 2 cut(s) 340, 579
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 554, 614
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 2 cut(s) 188, 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 2 cut(s) 286, 684
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 201, 684
BbvI GCAGC 3 cut(s) 86, 304, 691
BccI CCATC 4 cut(s) 19, 50, 419, 476
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 4 cut(s) 118, 348, 566, 600
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 221, 692
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 705
BlsI GCNGC 3 cut(s) 76, 319, 706
Bme1390I CCNGG 5 cut(s) 79, 118, 348, 566, 600
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmrFI CCNGG 5 cut(s) 79, 118, 348, 566, 600
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 117, 203, 546
BpuEI CTTGAG 3 cut(s) 137, 306, 698
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 330, 636
BsaWI WCCGGW 1 cut(s) 698
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 599
Bse1I ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseAI TCCGGA 1 cut(s) 698
BseBI CCWGG 4 cut(s) 118, 348, 566, 600
BseDI CCNNGG 2 cut(s) 330, 636
BseGI GGATG 2 cut(s) 61, 536
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseRI GAGGAG 3 cut(s) 567, 570, 685
BseSI GKGCMC 2 cut(s) 188, 330
BseXI GCAGC 3 cut(s) 86, 304, 691
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 201, 684
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 78, 699
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BsmAI GTCTC 2 cut(s) 221, 692
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 5 cut(s) 188, 201, 286, 330, 684
Bsp13I TCCGGA 1 cut(s) 698
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 3 cut(s) 41, 648, 657
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 698
BsrI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BssECI CCNNGG 2 cut(s) 330, 636
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 4 cut(s) 118, 348, 566, 600
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 61, 536
BstMAI GTCTC 2 cut(s) 221, 692
BstMWI GCNNNNNNNGC 2 cut(s) 654, 713
BstNI CCWGG 4 cut(s) 118, 348, 566, 600
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 5 cut(s) 77, 116, 346, 564, 598
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 188, 330
BstV1I GCAGC 3 cut(s) 86, 304, 691
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BstYI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 61, 536
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 381, 428, 462
Csp6I GTAC 1 cut(s) 351
CviAII CATG 4 cut(s) 239, 331, 595, 622
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 286, 684
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 4 cut(s) 116, 346, 564, 598
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 286, 684
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 4 cut(s) 242, 334, 598, 625
FaiI YATR 7 cut(s) 234, 240, 332, 596, 623, 654, 718
FatI CATG 4 cut(s) 238, 330, 594, 621
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 75, 318, 705
FokI GGATG 2 cut(s) 68, 523
FriOI GRGCYC 2 cut(s) 286, 684
Fsp4HI GCNGC 3 cut(s) 75, 318, 705
FspBI CTAG 2 cut(s) 339, 468
GluI GCNGC 3 cut(s) 75, 318, 705
GsuI CTGGAG 3 cut(s) 117, 203, 546
HaeIII GGCC 1 cut(s) 430
HapII CCGG 2 cut(s) 78, 699
Hin1II CATG 4 cut(s) 242, 334, 598, 625
HinfI GANTC 1 cut(s) 518
HpaII CCGG 2 cut(s) 78, 699
HphI GGTGA 2 cut(s) 554, 614
Hpy166II GTNNAC 2 cut(s) 384, 465
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 5 cut(s) 134, 206, 271, 287, 699
Hpy8I GTNNAC 2 cut(s) 384, 465
HpyAV CCTTC 1 cut(s) 590
HpyCH4V TGCA 3 cut(s) 19, 309, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 654, 713
HpyF3I CTNAG 1 cut(s) 683
Hsp92II CATG 4 cut(s) 242, 334, 598, 625
Kpn2I TCCGGA 1 cut(s) 698
LmnI GCTCC 2 cut(s) 28, 701
Lsp1109I GCAGC 3 cut(s) 86, 304, 691
MaeI CTAG 2 cut(s) 339, 468
MboII GAAGA 2 cut(s) 313, 637
MflI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
MhlI GDGCHC 5 cut(s) 188, 201, 286, 330, 684
MluCI AATT 4 cut(s) 373, 421, 454, 502
MroI TCCGGA 1 cut(s) 698
MroXI GAANNNNTTC 2 cut(s) 340, 579
MseI TTAA 2 cut(s) 180, 495
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 2 cut(s) 78, 699
MspR9I CCNGG 5 cut(s) 79, 118, 348, 566, 600
MvaI CCWGG 4 cut(s) 118, 348, 566, 600
MwoI GCNNNNNNNGC 2 cut(s) 654, 713
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 4 cut(s) 242, 334, 598, 625
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 2 cut(s) 340, 579
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 706
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 4 cut(s) 116, 346, 564, 598
PspGI CCWGG 4 cut(s) 116, 346, 564, 598
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 180, 495
SatI GCNGC 3 cut(s) 75, 318, 705
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 5 cut(s) 79, 118, 348, 566, 600
SduI GDGCHC 5 cut(s) 188, 201, 286, 330, 684
SetI ASST 8 cut(s) 33, 122, 225, 308, 436, 646, 684, 706
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 677
SmoI CTYRAG 4 cut(s) 152, 285, 321, 677
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 4 cut(s) 373, 421, 454, 502
SsiI CCGC 3 cut(s) 41, 648, 657
SspMI CTAG 2 cut(s) 339, 468
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 5 cut(s) 77, 116, 346, 564, 598
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 4 cut(s) 373, 421, 454, 502
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 180, 495
Tru9I TTAA 2 cut(s) 180, 495
TscAI CASTG 1 cut(s) 391
TseI GCWGC 3 cut(s) 74, 317, 704
TspDTI ATGAA 2 cut(s) 314, 638
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 381, 462
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 340, 579
XspI CTAG 2 cut(s) 339, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.