FvH4_6g22120

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009232
Physical Location & Seq
Reverse (-)
15794649 .. 15802080
7432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22120.t1

Sequence Viewer

Length: 3894 bp
ATGGCCTCAGGTACTAAGGAACGTATCAAGGAGATATTGGAGTTGCTAAAGGACCCCAATGTATCAACAGTTGTTCTTGATGGGAAGCATGGAGTAGGGAAAACGTGGGCAGCAAGAGAGATAATCAAGGATAATGATTTAATCCATGACTCTTTGTGGCTGTATGTGAATAACAATTATGACACAGAATCTCTTTACAAAAACATTGCTCGCCAGCTATCTCTATTATCTATTCATGAGGAATGGGAAGATGATGATGATGCTATTGAGGAAGAGCAGAGTTTGGAAATGTTGAAGCCGAGAATATCTGTGAAACTTGACGCATTCAGATCTGCAGCATATGAAGAAAATAAGCTATTTCTTCTAGTTCTGGACGATGTTCCTCATAAGCAGGATGTACTAGAGGAGATTTTGCAAGAAATAAACGACCTGCTGAATCCAAATCACCAAAAATCTTTCAAGGTTTTAATCACCAGAGGTGAAAGTGATGGCGAAGACAATGCACGGGTGATGAACCAGGAAATTGAGATCAGAGATACAACAGTACTGCAGATGGATCCTTTGTCTACAGATAAGTCCTTGGCTTTATTGTGTGAAGAAAGCAAGCATGCAGTTTCTGATCCAAGCTTTGAAAAACTGTCCACAGCTGTTGTGAAGATGAGTAATGGTATTCCTACCGTACTTATCACGATAGCAAAAGCATTAAATTACTTGGCAGAGAAAGGTTCTGGTGTTTGGTCAATGGAAAATGTTTTGGAAGAAGCAGCTTATGAAGGGGAAACTGCTAGGACTGCTATAAATCTGCTACTTCACTCTTGGTGTAATGCGTTGCCATCCGGTGCTCACACTGACTGCTTTTGGCATACCTTTCAGCTTCTCAACAAACATGGTGGTGTTCATTACAATGAGTTGATCACACAATGGATAATGGAAGGATATTTTGGAAGCAACAGTCAGATTGGGAAGGCGTATGAGCAAGGACATAAGGTTTTGATGGACCTTATAGATTGGGGCATGTTGAGAAAACAAGAGGATAATATGGTTGTCATGGGAGGAATACTTTTGTGTACAACTGATCATTGCCAAAGTGATTTCAATGCGACTGCAAGGCTTGGATTGGCTAATGTGTTTGAAGATGAAAAGTGGAAAGATCTTGGAGTTCTTGCACATACGGATCGCATGATAAAATCACCATCCAGTCATAAGACCTGGGAGAAAGTTTCCACACTTCTAATGGATGGGCATTGCATCGATAGGGAAGTCCCTGTCACATGCTTTCAACGCATGGAGACTCTCAAAGTTCTCATGTTACTCAAGCCTAGGTTCAAATCTCTGCCAGTACCCTTGGTTGGCATAAAGAACATTTCCGTTCTTGTGCTCAGATACTGTGATCGCTTGGAGAAGATTGATCCTATTCAAGAATTTCAAAGCTTAAGTGTTCTTGAGGTATCTGGTGCTACTTTATTGGAGATGATCCCTGATAACTTTTTTGCCAATATGGATAACCTTCGAAGCCTTAACCTTTCTGAAGCCAAGGTCAAATCACTACCTAGTTCTCTTTTTGACAGAGGTGAACTACGGTGGCTCATCCTTAGAGGATGTTCTCAATTGGAAACACTGGCAAGCTTAAAATCCTTGGGAAAGCTCATGGTGCTTGATCTTTCTGGTGCTACCTCTTTCACAAGTTTCCAAGACAAAACCTTAGCACCTCTCCAGAAACTTCATACAATTAATCTTTCCAATTCCCAAATTAGTCGCTTGCCTTTTCTGCATGATAATGTTGCACTTAATCATCTCTTATTAGGTGGTTGTGCAAGTTTAGCTCACCTTCCAACCTTGAACACAATACCTCAGCTTCAAACTCTTGACCTTGCTGGTGCTACAGGCTTAAAAGAAATACAGGTTGAACCCTTAGATAGCCTTGAGACCCTTGATTTATCTAGAACTCATATCAGTAGGCTACCTTCCAGTTTCAGCCACCTTTCTGATCTCTCCTTACGAGAGTGTCATAAGCTTTCAAAATTACCACTCACAAAAGAAAACAAGGATCTTGAATCACTGGACCTTTCTGGTTCTAGCTCTGTGAAAAAAATTGAAGACACATCCTTCCAGCATATGAGGCTTCTTCGAGTTCTCAACTTTTCAAAGGTTAAAGTAAAAGAACTACCTTCCCTGTCCAACCTAGCAAACCTCTGTCAACTTTTGCTAATGGATTGTTCATGTTTGGAAAAGCTTCCAGAGATGGAAGGACTTAAAAGGCTTCGAGAGCTTAATCTTTCCGGTTGCGTGGCTTTGGTTGATTTGCCAGACCTGAAGCCTCTTGAAAAACTGGAGATTCTTGATATTTCAGGTTGCAGGGCTGTGAAACAATTACATGAGGAATCCTTTCAAAAGATGTTTCATATTCGAATACTCAACCTCTCAGACACAATGCTTGAGTTCCTTCCTTCCATTTGCAAAGCCAGTAACCTCTGTCATCTCATCCTCAAAAATTGCAAAAACCTGAAAAAGCTTCCACCTCTGAAAGACTTTCCAAAACTTGTTGAACTCAATCTGTGTGGTGCCAGTTCTTTAGCCGACATTAATTTTGAATTCTTGGAGCATATGAAACACCTTCAAATCGTCGACTTATCTGGAATCCCACTGTCAGTGCTACCATCCATGTCCAAACTCACCAACCTCAGACAGCTCTCAGTAAAGGGTTGTTCATCCTTAGAAAGAGTGCAAGATCTAGAAGCACTAACACTACTTGAGATTCTTGATCTTTCTGGAACACTAGTTCGGACTCTGCCACCCCTAAACACTTTCAGCAACCTTTGCCAGCTCTTTTTAAAAGATTGTTCACATATAGAAGAGTTGCAGTCTCTGAAGTCACTTAGTCGCCTGGAGGTTCTTGATCTGTCAGGGACTGGAATGAAGACATTTCCTTATGAGATATCAGAGCTTCCTCATTTAAAGCAGCTATATCTGCCAGACTTGAGGGGTATGCGTGATATTGTCTTGGGAAAGATAAATCATTTGCCACAAGTGGTCAACTGGAATGAATGTGGCATCTTTGAGTCTGCTGATATTTACGTGGGCAGTGACAAACCTTCCATATCAGTTGGTGGCAATGAAATTTTTCACATTCTGGACAAACATCCTGAGTTTTGGGAAGAAAAGTTCAAAACATTTCATTTCCACGTAAAGAAGAAGCAAGGCGAAGATGGAGGTATAAATCACTGCAAAGATGAATATATCTTTAGAGACGTGTACTTCCATACTAAACATTTTCATCCAAAAGAGCATGACAGGTCTTTGGAAATCTATGGATCGTACAGTCTCCCTAAGGGTTTTGAAAGGGTCCTCAAGTGTACCGAATGCATATCTTTGGTTGACAATGACCTCATAGCTACACTATCTGATTTAGGTTCGGATAATGTGAAGGTAATGAAAGGCTGTTGGTTAGAGAGATGCAGTAAAGTACAGAACATTCTTTCTAACGAAGAAGCAGGTGTCACACTGGGCAGAAGTTTAGAGACTCTATGGGTTTCAAACCTTCCAATTTTGAGCAGACTATACAATGGGAGTGTGCAACCACAAGTCTTTCAGAACCTTAAACATTTGTATCTGGATTGTTGTCCAGGAATCATAAATGTCTTTCCCTCCTCCCAGCTGCCAGAAAACCTGGAAATTCTACATGTTCAGTTTTGTGATAAGTTGCAAACTTTGTTCGAATGTGACTCACAATCCAAATGTCAAATGCAAAGGTTGAGGAAATTGTATCTACTAGAACTACCGGAGTTGAGGAGCATTGGGATAAAATTGCCAGCTGAACTGAATCCTGTGGTCATCGAATGCCCCAAGTTGCCGAAGCTCCAGATGGATGTGACCGACCAGGTCTCCAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_8 NB-ARC

Protein Analysis

1298

Amino Acids

146.51

Weight (kDa)

5.65

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATPase_2 PF01637 8 - 230 3.7e-06 ATPase domain predominantly from Archaea
NB-ARC PF00931 9 - 202 2.1e-09 NB-ARC domain
LRR_14 PF23598 467 - 582 1.6e-06 Leucine-rich repeat region
LRR_14 PF23598 574 - 760 2.5e-06 Leucine-rich repeat region
LRR_14 PF23598 755 - 904 2.5e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 1173 - 1265 2.3e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3482
Acc36I ACCTGC 2 cut(s) 438, 3482
AccB1I GGYRCC 1 cut(s) 2561
AccI GTMKAC 2 cut(s) 566, 2625
AclWI GGATC 8 cut(s) 551, 564, 614, 1182, 1403, 1468, 2055, 3319
AcsI RAATTY 4 cut(s) 1421, 2591, 3117, 3672
AcuI CTGAAG 3 cut(s) 1548, 2333, 2888
AfiI CCNNNNNNNGG 1 cut(s) 1349
AflII CTTAAG 1 cut(s) 1432
AflIII ACRYGT 2 cut(s) 3249, 3679
AhlI ACTAGT 1 cut(s) 2776
AjiI CACGTC 1 cut(s) 3250
AjnI CCWGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AloI GAACNNNNNNTCC 4 cut(s) 2763, 2795, 3146, 3178
Alw21I GWGCWC 2 cut(s) 844, 1380
Alw26I GTCTC 7 cut(s) 1283, 1919, 2868, 3240, 3326, 3512, 3886
AlwI GGATC 8 cut(s) 551, 564, 614, 1182, 1403, 1468, 2055, 3319
AlwNI CAGNNNCTG 4 cut(s) 617, 1386, 2866, 2909
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 110, 335, 764, 2959, 3655
ApoI RAATTY 4 cut(s) 1421, 2591, 3117, 3672
ArsI GACNNNNNNTTYG 2 cut(s) 2570, 2602
AseI ATTAAT 2 cut(s) 1731, 2583
Asp700I GAANNNNTTC 3 cut(s) 2232, 2385, 3120
AspA2I CCTAGG 1 cut(s) 1319
AspS9I GGNCC 4 cut(s) 52, 997, 2062, 3343
AsuHPI GGTGA 8 cut(s) 437, 463, 491, 520, 1182, 1583, 1817, 2665
AsuII TTCGAA 3 cut(s) 1510, 2407, 3714
AvaII GGWCC 4 cut(s) 52, 997, 2062, 3343
AvrII CCTAGG 1 cut(s) 1319
AxyI CCTNAGG 2 cut(s) 7, 3327
BaeI ACNNNNGTAYC 4 cut(s) 528, 561, 3590, 3623
BamHI GGATCC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 2561
BarI GAAGNNNNNNTAC 2 cut(s) 1948, 1980
BbsI GAAGAC 3 cut(s) 501, 2103, 2924
Bbv12I GWGCWC 2 cut(s) 844, 1380
BbvCI CCTCAGC 1 cut(s) 1851
BbvI GCAGC 5 cut(s) 122, 347, 776, 2971, 3642
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
BclI TGATCA 2 cut(s) 912, 1075
BcoDI GTCTC 7 cut(s) 1283, 1919, 2868, 3240, 3326, 3512, 3886
BcuI ACTAGT 1 cut(s) 2776
BfmI CTRYAG 4 cut(s) 333, 548, 567, 1881
BfrI CTTAAG 1 cut(s) 1432
BfuAI ACCTGC 2 cut(s) 438, 3482
BglII AGATCT 3 cut(s) 329, 1150, 2728
BisI GCNGC 5 cut(s) 111, 336, 765, 2960, 3656
BlnI CCTAGG 1 cut(s) 1319
BlsI GCNGC 5 cut(s) 112, 337, 766, 2961, 3657
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
Bme18I GGWCC 4 cut(s) 52, 997, 2062, 3343
BmgBI CACGTC 1 cut(s) 3250
BmgT120I GGNCC 4 cut(s) 52, 997, 2062, 3343
BmiI GGNNCC 4 cut(s) 54, 558, 2563, 3344
BmrFI CCNGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
BmrI ACTGGG 1 cut(s) 3512
BmsI GCATC 4 cut(s) 250, 1257, 3060, 3443
BmuI ACTGGG 1 cut(s) 3512
BpiI GAAGAC 3 cut(s) 501, 2103, 2924
BpmI CTGGAG 4 cut(s) 1697, 2351, 2906, 3842
Bpu10I CCTNAGC 2 cut(s) 1702, 1851
Bpu14I TTCGAA 3 cut(s) 1510, 2407, 3714
BpuEI CTTGAG 7 cut(s) 1298, 1463, 1943, 2456, 2771, 2998, 3332
Bsa29I ATCGAT 1 cut(s) 1251
BsaAI YACGTR 2 cut(s) 3076, 3184
BsaI GGTCTC 2 cut(s) 1919, 3886
BsaJI CCNNGG 6 cut(s) 579, 1209, 1319, 1344, 1533, 1635
BsaWI WCCGGW 3 cut(s) 836, 2279, 3778
BsaXI ACNNNNNCTCC 1 cut(s) 3866
Bsc4I CCNNNNNNNGG 1 cut(s) 1349
Bse21I CCTNAGG 2 cut(s) 7, 3327
Bse3DI GCAATG 4 cut(s) 204, 1078, 1243, 3118
BseBI CCWGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 6 cut(s) 579, 1209, 1319, 1344, 1533, 1635
BseLI CCNNNNNNNGG 1 cut(s) 1349
BseMI GCAATG 4 cut(s) 204, 1078, 1243, 3118
BseMII CTCAG 7 cut(s) 21, 1393, 1865, 2436, 2695, 2706, 3135
BseRI GAGGAG 3 cut(s) 419, 3637, 3802
BseXI GCAGC 5 cut(s) 122, 347, 776, 2971, 3642
BseYI CCCAGC 1 cut(s) 3651
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 2561
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 2 cut(s) 844, 1380
BsiSI CCGG 3 cut(s) 837, 2280, 3779
BslFI GGGAC 2 cut(s) 1247, 2920
BslI CCNNNNNNNGG 1 cut(s) 1349
BsmAI GTCTC 7 cut(s) 1283, 1919, 2868, 3240, 3326, 3512, 3886
BsmBI CGTCTC 1 cut(s) 3240
BsmFI GGGAC 2 cut(s) 1247, 2920
BsmI GAATGC 3 cut(s) 323, 3365, 3842
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 1919, 3886
Bsp119I TTCGAA 3 cut(s) 1510, 2407, 3714
Bsp1286I GDGCHC 2 cut(s) 844, 1380
Bsp1407I TGTACA 1 cut(s) 1067
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 7 cut(s) 20, 1392, 1864, 2435, 2694, 2705, 3136
BspDI ATCGAT 1 cut(s) 1251
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 54, 558, 2563, 3344
BspMAI CTGCAG 2 cut(s) 337, 552
BspMI ACCTGC 2 cut(s) 438, 3482
BspPI GGATC 8 cut(s) 551, 564, 614, 1182, 1403, 1468, 2055, 3319
BspQI GCTCTTC 1 cut(s) 267
BspT104I TTCGAA 3 cut(s) 1510, 2407, 3714
BspT107I GGYRCC 1 cut(s) 2561
BspTI CTTAAG 1 cut(s) 1432
BspTNI GGTCTC 2 cut(s) 1919, 3886
BsrDI GCAATG 4 cut(s) 204, 1078, 1243, 3118
BsrGI TGTACA 1 cut(s) 1067
BssECI CCNNGG 6 cut(s) 579, 1209, 1319, 1344, 1533, 1635
BssT1I CCWWGG 5 cut(s) 579, 1319, 1344, 1533, 1635
Bst2UI CCWGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
Bst4CI ACNGT 9 cut(s) 70, 544, 639, 679, 953, 1388, 1581, 2646, 3320
Bst6I CTCTTC 2 cut(s) 267, 2847
BstAFI CTTAAG 1 cut(s) 1432
BstAPI GCANNNNNTGC 1 cut(s) 2817
BstAUI TGTACA 1 cut(s) 1067
BstBAI YACGTR 2 cut(s) 3076, 3184
BstBI TTCGAA 3 cut(s) 1510, 2407, 3714
BstC8I GCNNGC 8 cut(s) 211, 215, 605, 609, 1624, 1760, 2822, 3810
BstMAI GTCTC 7 cut(s) 1283, 1919, 2868, 3240, 3326, 3512, 3886
BstMWI GCNNNNNNNGC 9 cut(s) 791, 1281, 1651, 1768, 1820, 2119, 2266, 2817, 2968
BstNI CCWGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
BstNSI RCATGY 4 cut(s) 611, 1018, 1275, 3683
BstSCI CCNGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
BstSFI CTRYAG 4 cut(s) 333, 548, 567, 1881
BstV1I GCAGC 5 cut(s) 122, 347, 776, 2971, 3642
BstV2I GAAGAC 3 cut(s) 501, 2103, 2924
BstX2I RGATCY 5 cut(s) 329, 556, 1150, 2047, 2728
BstYI RGATCY 5 cut(s) 329, 556, 1150, 2047, 2728
Bsu15I ATCGAT 1 cut(s) 1251
Bsu36I CCTNAGG 2 cut(s) 7, 3327
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 1251
BtrI CACGTC 1 cut(s) 3250
BtsI GCAGTG 2 cut(s) 3088, 3220
BtsIMutI CAGTG 8 cut(s) 846, 1616, 2057, 2642, 2655, 3088, 3220, 3500
BveI ACCTGC 2 cut(s) 438, 3482
Cac8I GCNNGC 8 cut(s) 211, 215, 605, 609, 1624, 1760, 2822, 3810
CaiI CAGNNNCTG 4 cut(s) 617, 1386, 2866, 2909
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 52, 997, 2062, 3343
ClaI ATCGAT 1 cut(s) 1251
CseI GACGC 1 cut(s) 329
CsiI ACCWGGT 1 cut(s) 3876
CspCI CAANNNNNGTGG 6 cut(s) 631, 666, 871, 906, 2539, 2574
DraI TTTAAA 2 cut(s) 2832, 2955
Eam1104I CTCTTC 2 cut(s) 267, 2847
EarI CTCTTC 2 cut(s) 267, 2847
Eco130I CCWWGG 5 cut(s) 579, 1319, 1344, 1533, 1635
Eco31I GGTCTC 2 cut(s) 1919, 3886
Eco32I GATATC 1 cut(s) 2937
Eco47I GGWCC 4 cut(s) 52, 997, 2062, 3343
Eco57I CTGAAG 3 cut(s) 1548, 2333, 2888
Eco81I CCTNAGG 2 cut(s) 7, 3327
EcoO109I RGGNCCY 2 cut(s) 52, 3343
EcoRI GAATTC 1 cut(s) 2591
EcoRII CCWGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
EcoRV GATATC 1 cut(s) 2937
EcoT14I CCWWGG 5 cut(s) 579, 1319, 1344, 1533, 1635
EcoT22I ATGCAT 1 cut(s) 3365
ErhI CCWWGG 5 cut(s) 579, 1319, 1344, 1533, 1635
Esp3I CGTCTC 1 cut(s) 3240
FaqI GGGAC 2 cut(s) 1247, 2920
FauNDI CATATG 3 cut(s) 340, 2115, 2604
FbaI TGATCA 2 cut(s) 912, 1075
FblI GTMKAC 2 cut(s) 566, 2625
Fnu4HI GCNGC 5 cut(s) 111, 336, 765, 2960, 3656
Fsp4HI GCNGC 5 cut(s) 111, 336, 765, 2960, 3656
GluI GCNGC 5 cut(s) 111, 336, 765, 2960, 3656
GsaI CCCAGC 1 cut(s) 3655
GsuI CTGGAG 4 cut(s) 1697, 2351, 2906, 3842
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 837, 2280, 3779
HgaI GACGC 1 cut(s) 329
HincII GTYRAC 4 cut(s) 2198, 2626, 3034, 3376
HindII GTYRAC 4 cut(s) 2198, 2626, 3034, 3376
HindIII AAGCTT 6 cut(s) 625, 1429, 1624, 2012, 2231, 2510
HpaII CCGG 3 cut(s) 837, 2280, 3779
HphI GGTGA 8 cut(s) 437, 463, 491, 520, 1182, 1583, 1817, 2665
Hpy99I CGWCG 1 cut(s) 2627
HpyCH4III ACNGT 9 cut(s) 70, 544, 639, 679, 953, 1388, 1581, 2646, 3320
HpyCH4IV ACGT 5 cut(s) 22, 104, 3075, 3183, 3249
HpyF10VI GCNNNNNNNGC 9 cut(s) 791, 1281, 1651, 1768, 1820, 2119, 2266, 2817, 2968
HpySE526I ACGT 5 cut(s) 22, 104, 3075, 3183, 3249
Ksp22I TGATCA 2 cut(s) 912, 1075
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 2599, 3789, 3861
Lsp1109I GCAGC 5 cut(s) 122, 347, 776, 2971, 3642
LweI GCATC 4 cut(s) 250, 1257, 3060, 3443
MabI ACCWGGT 1 cut(s) 3876
MaeII ACGT 5 cut(s) 22, 104, 3075, 3183, 3249
MaeIII GTNAC 8 cut(s) 1267, 1308, 2465, 2871, 3083, 3496, 3719, 3868
MfeI CAATTG 1 cut(s) 1607
MflI RGATCY 5 cut(s) 329, 556, 1150, 2047, 2728
MhlI GDGCHC 2 cut(s) 844, 1380
MlyI GAGTC 6 cut(s) 143, 1285, 2779, 3068, 3514, 3716
MmeI TCCRAC 2 cut(s) 1856, 2202
Mph1103I ATGCAT 1 cut(s) 3365
MroXI GAANNNNTTC 3 cut(s) 2232, 2385, 3120
MslI CAYNNNNRTG 3 cut(s) 891, 903, 1776
MspA1I CMGCKG 3 cut(s) 647, 3655, 3812
MspCI CTTAAG 1 cut(s) 1432
MspI CCGG 3 cut(s) 837, 2280, 3779
MspR9I CCNGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
MunI CAATTG 1 cut(s) 1607
Mva1269I GAATGC 3 cut(s) 323, 3365, 3842
MvaI CCWGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
MwoI GCNNNNNNNGC 9 cut(s) 791, 1281, 1651, 1768, 1820, 2119, 2266, 2817, 2968
NdeI CATATG 3 cut(s) 340, 2115, 2604
NlaIV GGNNCC 4 cut(s) 54, 558, 2563, 3344
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 6 cut(s) 1267, 2871, 3083, 3496, 3719, 3868
NsiI ATGCAT 1 cut(s) 3365
NspI RCATGY 4 cut(s) 611, 1018, 1275, 3683
NspV TTCGAA 3 cut(s) 1510, 2407, 3714
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 3482
PciI ACATGT 1 cut(s) 3679
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 3 cut(s) 323, 3365, 3842
PdmI GAANNNNTTC 3 cut(s) 2232, 2385, 3120
PfeI GAWTC 9 cut(s) 188, 436, 2054, 2335, 2381, 2637, 2755, 3627, 3820
PflFI GACNNNGTC 1 cut(s) 3878
PfoI TCCNGGA 1 cut(s) 3622
PkrI GCNGC 5 cut(s) 112, 337, 766, 2961, 3657
PleI GAGTC 6 cut(s) 143, 1285, 2779, 3067, 3514, 3716
PpsI GAGTC 6 cut(s) 143, 1285, 2779, 3067, 3514, 3716
Ppu21I YACGTR 2 cut(s) 3076, 3184
PpuMI RGGWCCY 2 cut(s) 52, 3343
PscI ACATGT 1 cut(s) 3679
PshBI ATTAAT 2 cut(s) 1731, 2583
Psp5II RGGWCCY 2 cut(s) 52, 3343
Psp6I CCWGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
PspFI CCCAGC 1 cut(s) 3651
PspGI CCWGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
PspN4I GGNNCC 4 cut(s) 54, 558, 2563, 3344
PspPI GGNCC 4 cut(s) 52, 997, 2062, 3343
PspPPI RGGWCCY 2 cut(s) 52, 3343
PstI CTGCAG 2 cut(s) 337, 552
PstNI CAGNNNCTG 4 cut(s) 617, 1386, 2866, 2909
PsuI RGATCY 5 cut(s) 329, 556, 1150, 2047, 2728
PsyI GACNNNGTC 1 cut(s) 3878
PvuII CAGCTG 3 cut(s) 647, 3655, 3812
RseI CAYNNNNRTG 3 cut(s) 891, 903, 1776
SalI GTCGAC 1 cut(s) 2624
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 5 cut(s) 111, 336, 765, 2960, 3656
Sau96I GGNCC 4 cut(s) 52, 997, 2062, 3343
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 6 cut(s) 143, 1285, 2779, 3068, 3514, 3716
ScrFI CCNGG 6 cut(s) 518, 1210, 2885, 3624, 3668, 3878
SduI GDGCHC 2 cut(s) 844, 1380
SexAI ACCWGGT 1 cut(s) 3876
SfaNI GCATC 4 cut(s) 250, 1257, 3060, 3443
SfcI CTRYAG 4 cut(s) 333, 548, 567, 1881
SfuI TTCGAA 3 cut(s) 1510, 2407, 3714
SinI GGWCC 4 cut(s) 52, 997, 2062, 3343
SmiMI CAYNNNNRTG 3 cut(s) 891, 903, 1776
SmlI CTYRAG 8 cut(s) 1313, 1432, 1442, 1922, 2435, 2750, 2977, 3347
SmoI CTYRAG 8 cut(s) 1313, 1432, 1442, 1922, 2435, 2750, 2977, 3347
SpeI ACTAGT 1 cut(s) 2776
SphI GCATGC 1 cut(s) 611
StyD4I CCNGG 6 cut(s) 516, 1208, 2883, 3622, 3666, 3876
StyI CCWWGG 5 cut(s) 579, 1319, 1344, 1533, 1635
TaaI ACNGT 9 cut(s) 70, 544, 639, 679, 953, 1388, 1581, 2646, 3320
TaiI ACGT 5 cut(s) 25, 107, 3078, 3186, 3252
TaqI TCGA 8 cut(s) 1251, 1510, 2128, 2263, 2407, 2625, 3714, 3834
TaqII GACCGA 1 cut(s) 3887
TatI WGTACW 5 cut(s) 397, 544, 1067, 3252, 3463
TfiI GAWTC 9 cut(s) 188, 436, 2054, 2335, 2381, 2637, 2755, 3627, 3820
TscAI CASTG 8 cut(s) 853, 1623, 2064, 2649, 2655, 3088, 3227, 3507
TseFI GTSAC 6 cut(s) 1267, 2871, 3083, 3496, 3719, 3868
TseI GCWGC 5 cut(s) 110, 335, 764, 2959, 3655
Tsp45I GTSAC 6 cut(s) 1267, 2871, 3083, 3496, 3719, 3868
TspGWI ACGGA 2 cut(s) 1187, 1357
TspRI CASTG 8 cut(s) 853, 1623, 2064, 2649, 2655, 3088, 3227, 3507
Tth111I GACNNNGTC 1 cut(s) 3878
Vha464I CTTAAG 1 cut(s) 1432
VpaK11BI GGWCC 4 cut(s) 52, 997, 2062, 3343
VspI ATTAAT 2 cut(s) 1731, 2583
XapI RAATTY 4 cut(s) 1421, 2591, 3117, 3672
XbaI TCTAGA 2 cut(s) 1940, 2731
XceI RCATGY 4 cut(s) 611, 1018, 1275, 3683
XcmI CCANNNNNNNNNTGG 1 cut(s) 1231
XmaJI CCTAGG 1 cut(s) 1319
XmiI GTMKAC 2 cut(s) 566, 2625
XmnI GAANNNNTTC 3 cut(s) 2232, 2385, 3120
ZrmI AGTACT 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 3365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.