Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009232

Physical Location & Seq

Genomic Coordinates Forward (+)

25386930 .. 25387863

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCAAATTCAACAAACTCAGACAGTTCTCAGTAAAGGGTTGTTCATCCTTAAATGAAGTGCTACATCTTGAAGAACTAACACTTCTTGAGCTTCTTGATCTTTCTAAAACAGCAGTTCCGAGTCTGCCTCCCCTAACCAGTTTTAGCAACCTCCGCCAGCTTTTGCTAACAGATTGTTTACAGATAGAAAAGTTGCAGTGTCTAGAGTCGCTTAGTCGGCTGGAGCTTTATCTGCCCGACTTGAGGGGTATGCGTGATCTTGACTTGGGAAAGATAAAGCGTTTGCCACAAAAGGTCAACTGGGATGAATGTCACATCTTTGAGTTTGCTGATATTTACATGGGCAGTGACAAGCCTTCCCTATCTGTAAGTGGCTTTGAAATTTTTCACATTTTGGACAAACATCCAAAGTTCTGGGAAGAAAAGTTCAAAAAATTTCATTTCCATGTAAAGAAGAAGGAAGGCGAAGATGGAGGTTCTGATAATGTGAGGGCAATGAAAGGCTGTTGGTTAGAGAGATGTAGTAAAGTACGAAACATTCTTTCTAATGATGAGGCAGGTGTCACACTGGGCAGAAGTTTAGAGACTATGGATTTCAAACCTCCCAATTTTGAGCAGTCTATACAATGGGAGTGTGCAATCAGTGGTGTTTCAGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_5 LRR_8 NB-ARC

Protein Analysis

222

Amino Acids

25.41

Weight (kDa)

6.1

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19050 AT5G45510 AT5G45510
fragaria_vesca	FvH4_6g22120
malus_domestica	MD14G1055300.v1.1
prunus_persica	Prupe.7G078000_v2.0.a1 Prupe.7G078200_v2.0.a1
pyrus_communis	pycom14g04560
rosa_chinensis	RchiOBHm_Chr3g0479451
rosa_laevigata	RLG00000023571 RLG00000023572 RLG00000023574
rosa_multiflora	Rmu_sc0003405.1_g000008 Rmu_sc0004732.1_g000021 Rmu_sc0015035.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402260
rosa_rugosa	Rorug03G0175400
rosa_samantha	Rh3AG226600 Rh3BG259700 Rh3CG255700 Rh3DG251800
rosa_wichuraiana	Rw3G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AciI	CCGC	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	8, 384, 437
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	13, 74, 383, 433, 601
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	3 cut(s)	94, 163, 229
AluI	AGCT	3 cut(s)	94, 163, 229
Alw26I	GTCTC	1 cut(s)	581
ApoI	RAATTY	3 cut(s)	8, 384, 437
Asp700I	GAANNNNTTC	1 cut(s)	387
BccI	CCATC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	551
BmrI	ACTGGG	2 cut(s)	313, 581
BmuI	ACTGGG	2 cut(s)	313, 581
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	110, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	3 cut(s)	141, 308, 576
Bse3DI	GCAATG	1 cut(s)	504
BseGI	GGATG	3 cut(s)	47, 313, 406
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	34, 45
BseNI	ACTGG	3 cut(s)	141, 308, 576
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	100, 259
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	33, 44
BspMI	ACCTGC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	141, 308, 576
BssMI	GATC	2 cut(s)	100, 259
Bst4CI	ACNGT	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	20, 31, 215
BstF5I	GGATG	3 cut(s)	47, 313, 406
BstKTI	GATC	2 cut(s)	103, 262
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	2 cut(s)	100, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 220, 235
BstXI	CCANNNNNNTGG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	47, 313, 406
BtsI	GCAGTG	2 cut(s)	206, 355
BtsIMutI	CAGTG	4 cut(s)	206, 355, 569, 652
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	2 cut(s)	343, 449
CviJI	RGCY	7 cut(s)	94, 163, 223, 229, 358, 378, 507
CviKI_1	RGCY	7 cut(s)	94, 163, 223, 229, 358, 378, 507
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	20, 31, 215
DpnI	GATC	2 cut(s)	102, 261
DpnII	GATC	2 cut(s)	100, 259
EciI	GGCGGA	1 cut(s)	146
FaeI	CATG	2 cut(s)	346, 452
FaiI	YATR	5 cut(s)	254, 344, 450, 593, 626
FatI	CATG	2 cut(s)	342, 448
FokI	GGATG	3 cut(s)	34, 320, 393
FspBI	CTAG	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	346, 452
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	124, 209
Hpy166II	GTNNAC	2 cut(s)	182, 301
Hpy188I	TCNGA	4 cut(s)	23, 123, 484, 658
Hpy188III	TCNNGA	5 cut(s)	71, 89, 98, 206, 263
Hpy8I	GTNNAC	2 cut(s)	182, 301
HpyAV	CCTTC	3 cut(s)	369, 454, 458
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	199, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 220, 235
HpyF3I	CTNAG	3 cut(s)	20, 31, 215
Hsp92II	CATG	2 cut(s)	346, 452
Kzo9I	GATC	2 cut(s)	100, 259
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	154, 173, 209, 289, 403, 546, 557
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	314, 350, 565
MalI	GATC	2 cut(s)	102, 261
MboI	GATC	2 cut(s)	100, 259
MboII	GAAGA	4 cut(s)	86, 434, 469, 482
MluCI	AATT	4 cut(s)	8, 384, 437, 610
MlyI	GAGTC	2 cut(s)	133, 218
MnlI	CCTC	7 cut(s)	141, 164, 240, 470, 486, 550, 615
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	2 cut(s)	53, 664
MslI	CAYNNNNRTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	156, 220, 235
NdeII	GATC	2 cut(s)	100, 259
NlaIII	CATG	2 cut(s)	346, 452
NmuCI	GTSAC	3 cut(s)	314, 350, 565
PaqCI	CACCTGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	132, 217
PpsI	GAGTC	2 cut(s)	132, 217
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	53, 664
Sau3AI	GATC	2 cut(s)	100, 259
SchI	GAGTC	2 cut(s)	133, 218
SetI	ASST	9 cut(s)	96, 156, 165, 231, 300, 481, 565, 607, 664
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	89, 244
SmoI	CTYRAG	2 cut(s)	89, 244
Sse9I	AATT	4 cut(s)	8, 384, 437, 610
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	27
TasI	AATT	4 cut(s)	8, 384, 437, 610
Tru1I	TTAA	2 cut(s)	53, 664
Tru9I	TTAA	2 cut(s)	53, 664
TscAI	CASTG	4 cut(s)	206, 355, 576, 652
TseFI	GTSAC	3 cut(s)	314, 350, 565
Tsp45I	GTSAC	3 cut(s)	314, 350, 565
TspDTI	ATGAA	5 cut(s)	36, 72, 324, 431, 515
TspRI	CASTG	4 cut(s)	206, 355, 576, 652
XapI	RAATTY	3 cut(s)	8, 384, 437
XbaI	TCTAGA	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.