RLG00000023571

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009232
Physical Location & Seq
Forward (+)
25342959 .. 25343802
844 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023571

Sequence Viewer

Length: 660 bp
ATGGTCTTAGGTACAAAGGAGGAACATAAAAAGAAGATATTGGAGCTGTTGAAGGATCCCAATGTGTCAACAGTAGTTCTTGATGGGAAGCAGTCTCTTCACACAAACATTGCTCGCCAGCTATCTCTTTTCTCTATTTATGAGGAATGGGAAGATGATGATGTTGTTGAGGAGGAGCAGAGCTTGGAAAAGTTGAAGCAGAGAATATCTGATGTAGAGGAGATTGTGGAAGAAGTTAACAACCTGCTGACAAATGACCGCACATCTTTCAAGGTTTTAATCACCAGAGGCACCACACTCGGGATGAACCAAGAAATTAAGAGCTGCAATACAAAAGTACACCAGATAGATCCATTGTCCACGGATGAGTCCTTGGCTTTATTGCGTGAAAGAACCAAGAAAGAAGTTTTTGATTGTCCAAGCTTTGAAAAGCTATCCACAGCTATAGTGGAGATGAGTAAGGGTATTCCTACCGTACTTATCACCATAGCAAAAGCAATAAATTACCTGGCAGATGAAGGTTCTAGCGTTTGGTCGTTGGAAAATGTTTTGGAAGAAGCAGCTTATGATGGGGAAACTGCTATAAATCTGCTACTTCGCTCTTGGTGTAATGCATTGCCAACCGGTGCTCCGACCGACTGCTTTTGGCATACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_8 NB-ARC

Protein Analysis

220

Amino Acids

24.71

Weight (kDa)

4.71

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 1 cut(s) 259
AclWI GGATC 3 cut(s) 50, 63, 344
AfaI GTAC 3 cut(s) 13, 339, 477
AfiI CCNNNNNNNGG 1 cut(s) 300
AgeI ACCGGT 1 cut(s) 623
AgsI TTSAA 4 cut(s) 52, 196, 271, 428
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 8 cut(s) 46, 121, 183, 324, 423, 433, 443, 563
AluI AGCT 8 cut(s) 46, 121, 183, 324, 423, 433, 443, 563
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 3 cut(s) 50, 63, 344
Ama87I CYCGRG 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 324, 560
AsiGI ACCGGT 1 cut(s) 623
AsuHPI GGTGA 2 cut(s) 274, 475
AvaI CYCGRG 1 cut(s) 299
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 311, 572
BccI CCATC 2 cut(s) 77, 563
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 325, 561
BlsI GCNGC 2 cut(s) 326, 562
Bme1390I CCNGG 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 57, 292
BmrFI CCNGG 1 cut(s) 509
BsaJI CCNNGG 2 cut(s) 360, 372
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 623
Bse3DI GCAATG 2 cut(s) 108, 614
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 360, 372
BseGI GGATG 2 cut(s) 309, 370
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 2 cut(s) 108, 614
BseRI GAGGAG 3 cut(s) 185, 188, 233
BseXI GCAGC 2 cut(s) 311, 572
Bsh1285I CGRYCG 1 cut(s) 636
BshNI GGYRCC 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 623
BsiEI CGRYCG 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 2 cut(s) 55, 349
BspACI CCGC 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 57, 292
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 50, 63, 344
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 2 cut(s) 108, 614
BsrFI RCCGGY 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 360, 372
BssMI GATC 2 cut(s) 55, 349
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 73, 475
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 309, 370
BstKTI GATC 2 cut(s) 58, 352
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 55, 349
BstMCI CGRYCG 1 cut(s) 636
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 311, 572
BstX2I RGATCY 2 cut(s) 55, 349
BstYI RGATCY 2 cut(s) 55, 349
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 309, 370
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 115, 119
Cfr10I RCCGGY 1 cut(s) 623
Csp6I GTAC 3 cut(s) 12, 338, 476
CspAI ACCGGT 1 cut(s) 623
CviAII CATG 1 cut(s) 655
CviJI RGCY 9 cut(s) 46, 121, 183, 324, 377, 423, 433, 443, 563
CviKI_1 RGCY 9 cut(s) 46, 121, 183, 324, 377, 423, 433, 443, 563
CviQI GTAC 3 cut(s) 12, 338, 476
DdeI CTNAG 1 cut(s) 7
DpnI GATC 2 cut(s) 57, 351
DpnII GATC 2 cut(s) 55, 349
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 1 cut(s) 658
FaiI YATR 8 cut(s) 27, 141, 446, 488, 567, 584, 651, 656
FatI CATG 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 325, 561
FokI GGATG 2 cut(s) 316, 377
Fsp4HI GCNGC 2 cut(s) 325, 561
FspBI CTAG 1 cut(s) 525
GluI GCNGC 2 cut(s) 325, 561
HapII CCGG 1 cut(s) 624
Hin1II CATG 1 cut(s) 658
HincII GTYRAC 2 cut(s) 69, 238
HindII GTYRAC 2 cut(s) 69, 238
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 1 cut(s) 368
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 624
HphI GGTGA 2 cut(s) 274, 475
Hpy166II GTNNAC 4 cut(s) 69, 238, 340, 360
Hpy188I TCNGA 2 cut(s) 211, 633
Hpy188III TCNNGA 2 cut(s) 80, 301
Hpy8I GTNNAC 4 cut(s) 69, 238, 340, 360
HpyAV CCTTC 2 cut(s) 46, 512
HpyCH4III ACNGT 2 cut(s) 73, 475
HpyCH4V TGCA 2 cut(s) 327, 614
HpyF3I CTNAG 1 cut(s) 7
Hsp92II CATG 1 cut(s) 658
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 55, 349
LmnI GCTCC 3 cut(s) 43, 175, 634
LpnPI CCDG 7 cut(s) 131, 257, 298, 356, 494, 521, 637
Lsp1109I GCAGC 2 cut(s) 311, 572
MaeI CTAG 1 cut(s) 525
MalI GATC 2 cut(s) 57, 351
MboI GATC 2 cut(s) 55, 349
MboII GAAGA 5 cut(s) 46, 89, 164, 242, 566
MflI RGATCY 2 cut(s) 55, 349
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 2 cut(s) 315, 502
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 2 cut(s) 519, 656
MnlI CCTC 6 cut(s) 13, 136, 163, 166, 211, 281
Mph1103I ATGCAT 1 cut(s) 616
MseI TTAA 3 cut(s) 237, 278, 318
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
NdeII GATC 2 cut(s) 55, 349
NlaIII CATG 1 cut(s) 658
NlaIV GGNNCC 2 cut(s) 57, 292
NsiI ATGCAT 1 cut(s) 616
PinAI ACCGGT 1 cut(s) 623
PkrI GCNGC 2 cut(s) 326, 562
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 57, 292
PsuI RGATCY 2 cut(s) 55, 349
RsaI GTAC 3 cut(s) 13, 339, 477
RsaNI GTAC 3 cut(s) 12, 338, 476
SaqAI TTAA 3 cut(s) 237, 278, 318
SatI GCNGC 2 cut(s) 325, 561
Sau3AI GATC 2 cut(s) 55, 349
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 444
Sse9I AATT 2 cut(s) 315, 502
SsiI CCGC 1 cut(s) 259
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 73, 475
TaqII GACCGA 1 cut(s) 650
TasI AATT 2 cut(s) 315, 502
TatI WGTACW 1 cut(s) 337
Tru1I TTAA 3 cut(s) 237, 278, 318
Tru9I TTAA 3 cut(s) 237, 278, 318
TseI GCWGC 2 cut(s) 324, 560
TspDTI ATGAA 2 cut(s) 320, 531
TspGWI ACGGA 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.