Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009232

Physical Location & Seq

Genomic Coordinates Forward (+)

11417274 .. 11418390

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G078200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGTATTAAAAATATTTGGCTTTCGGAAGACTGCAGGGTTTACGCTTGAAGAGTCAATACAAAGTCCTAGGTTTTTGGATGAAAATCCACAGTTGTGGGAAACAAAGTTCAAAAGATTTCATTTCTCTGTGATCGAGAAGCAAGGCGAAGATGGAGATATCAACGGCTGCAAAGATGAACTTTTCTTCAGAGATCTGTACTCCTACACCAGGCATTTTCCTAAAGAGCACGATCGGTCTTTGGAAATCCATGGATCATATAGTCTTCCTAAAGGTTTTGAAAGTGTCCTGCAGCATGCCGATTATATATCCTTGGTTGATAATGACCGTATAAGTTGCCTATCTGAAATAGGTGCTGATAATGTGAAGGTAATGAAAGGCTGTTGGATTGAGAGATGCAGTGAAATTAAGAGCATTCTTCGTGGAGAAGAGGCAGATGTCAGACTGGGGAGCAGTTTAGAGATTCTTTGGATTTCAAACCTTCCAAAGTTGAGCAGTCTATACAATGGGAAAGAGGATCTGGAGTGCTTTAAGAACCTTAAACATTTGTATCTAGATTGCTGTCCAATGATTGTGAGTGCCTTTCCCTCATCCCAGCTGCTAGAAAACCTCGAAATTTTCCATGTTCAATTTTGTGAGAGATTGACAACTTTGTTTGAAAGTGATTCACCATCTGGATCTACATTGAAAAAGTTGAGGACGTTGTATCTGTTGGAACTGCCAGAGTTGACGCGCATTGGGATAAAATTGCAAGCTCCGGTGACTTTGGAAGTTATGGAATGCCCTAAGTTGTCCAAGGACCATCTTGATGTGGATAACCGTTTCTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_5 LRR_8 NB-ARC

Protein Analysis

278

Amino Acids

31.96

Weight (kDa)

5.58

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19050 AT5G45510 AT5G45510
fragaria_vesca	FvH4_6g22120
malus_domestica	MD14G1055300.v1.1
prunus_persica	Prupe.7G078000_v2.0.a1 Prupe.7G078200_v2.0.a1
pyrus_communis	pycom14g04560
rosa_chinensis	RchiOBHm_Chr3g0479451
rosa_laevigata	RLG00000023571 RLG00000023572 RLG00000023574
rosa_multiflora	Rmu_sc0003405.1_g000008 Rmu_sc0004732.1_g000021 Rmu_sc0015035.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402260
rosa_rugosa	Rorug03G0175400
rosa_samantha	Rh3AG226600 Rh3BG259700 Rh3CG255700 Rh3DG251800
rosa_wichuraiana	Rw3G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	733
AclWI	GGATC	3 cut(s)	262, 525, 685
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	7 cut(s)	50, 112, 281, 477, 629, 659, 688
AjnI	CCWGG	1 cut(s)	209
AleI	CACNNNNGTG	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	598, 755
AluI	AGCT	2 cut(s)	598, 755
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	262, 525, 685
ApeKI	GCWGC	3 cut(s)	168, 292, 598
ApoI	RAATTY	1 cut(s)	615
AspA2I	CCTAGG	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	660, 772
AvaII	GGWCC	1 cut(s)	799
AvrII	CCTAGG	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	533, 566
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	2 cut(s)	35, 257
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	155, 304, 585
BccI	CCATC	3 cut(s)	146, 679, 810
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	211
BfaI	CTAG	3 cut(s)	69, 554, 602
BfmI	CTRYAG	2 cut(s)	33, 290
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	169, 293, 599
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	3 cut(s)	170, 294, 600
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	799
BmgT120I	GGNCC	1 cut(s)	799
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	2 cut(s)	35, 257
BpmI	CTGGAG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	68, 250, 312, 795
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	4 cut(s)	68, 250, 312, 795
BseGI	GGATG	2 cut(s)	85, 590
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	155, 304, 585
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	733
Bsh1285I	CGRYCG	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmI	GAATGC	2 cut(s)	414, 785
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
Bsp19I	CCATGG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	733
BspMAI	CTGCAG	2 cut(s)	37, 294
BspPI	GGATC	3 cut(s)	262, 525, 685
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	4 cut(s)	68, 250, 312, 795
BssMI	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
BssT1I	CCWWGG	4 cut(s)	68, 250, 312, 795
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	93, 329, 821
Bst6I	CTCTTC	2 cut(s)	45, 423
BstC8I	GCNNGC	2 cut(s)	297, 753
BstDEI	CTNAG	1 cut(s)	786
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	85, 590
BstFNI	CGCG	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	6 cut(s)	135, 196, 235, 257, 520, 680
BstMBI	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
BstMCI	CGRYCG	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	33, 290
BstUI	CGCG	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	155, 304, 585
BstV2I	GAAGAC	2 cut(s)	35, 257
BstX2I	RGATCY	3 cut(s)	193, 517, 677
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	3 cut(s)	193, 517, 677
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	85, 590
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	297, 753
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	799
CseI	GACGC	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	3 cut(s)	251, 296, 623
CviJI	RGCY	5 cut(s)	21, 168, 381, 598, 755
CviKI_1	RGCY	5 cut(s)	21, 168, 381, 598, 755
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	6 cut(s)	134, 195, 234, 256, 519, 679
DpnII	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
Eam1104I	CTCTTC	2 cut(s)	45, 423
EarI	CTCTTC	2 cut(s)	45, 423
Eco130I	CCWWGG	4 cut(s)	68, 250, 312, 795
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	4 cut(s)	68, 250, 312, 795
ErhI	CCWWGG	4 cut(s)	68, 250, 312, 795
FaeI	CATG	3 cut(s)	254, 299, 626
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	3 cut(s)	250, 295, 622
Fnu4HI	GCNGC	3 cut(s)	169, 293, 599
FokI	GGATG	2 cut(s)	92, 577
Fsp4HI	GCNGC	3 cut(s)	169, 293, 599
FspBI	CTAG	3 cut(s)	69, 554, 602
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	3 cut(s)	169, 293, 599
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	542
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	1 cut(s)	739
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	3 cut(s)	254, 299, 626
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HinfI	GANTC	3 cut(s)	53, 463, 665
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	2 cut(s)	660, 772
Hpy166II	GTNNAC	2 cut(s)	42, 729
Hpy188I	TCNGA	4 cut(s)	27, 191, 346, 443
Hpy188III	TCNNGA	5 cut(s)	136, 521, 554, 675, 806
Hpy8I	GTNNAC	2 cut(s)	42, 729
HpyAV	CCTTC	2 cut(s)	361, 491
HpyCH4III	ACNGT	3 cut(s)	93, 329, 821
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	5 cut(s)	35, 171, 292, 399, 751
HpyF3I	CTNAG	1 cut(s)	786
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	3 cut(s)	254, 299, 626
HspAI	GCGC	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
LmnI	GCTCC	2 cut(s)	450, 760
Lsp1109I	GCAGC	3 cut(s)	155, 304, 585
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	3 cut(s)	69, 554, 602
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	6 cut(s)	134, 195, 234, 256, 519, 679
MboI	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
MboII	GAAGA	7 cut(s)	40, 62, 161, 178, 257, 410, 440
MflI	RGATCY	3 cut(s)	193, 517, 677
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	405, 615, 629, 746
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	365, 693
MnlI	CCTC	5 cut(s)	424, 508, 598, 620, 690
MseI	TTAA	4 cut(s)	8, 408, 531, 540
MslI	CAYNNNNRTG	2 cut(s)	94, 807
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	2 cut(s)	414, 785
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	733
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
NlaIII	CATG	3 cut(s)	254, 299, 626
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	299
PctI	GAATGC	2 cut(s)	414, 785
PfeI	GAWTC	2 cut(s)	463, 665
PkrI	GCNGC	3 cut(s)	170, 294, 600
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	799
PstI	CTGCAG	2 cut(s)	37, 294
PsuI	RGATCY	3 cut(s)	193, 517, 677
PvuI	CGATCG	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	94, 807
SaqAI	TTAA	4 cut(s)	8, 408, 531, 540
SatI	GCNGC	3 cut(s)	169, 293, 599
Sau3AI	GATC	6 cut(s)	132, 193, 232, 254, 517, 677
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	2 cut(s)	33, 290
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	2 cut(s)	94, 807
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	4 cut(s)	405, 615, 629, 746
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	3 cut(s)	69, 554, 602
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	4 cut(s)	68, 250, 312, 795
TaaI	ACNGT	3 cut(s)	93, 329, 821
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	2 cut(s)	135, 612
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	4 cut(s)	405, 615, 629, 746
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	463, 665
Tru1I	TTAA	4 cut(s)	8, 408, 531, 540
Tru9I	TTAA	4 cut(s)	8, 408, 531, 540
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	3 cut(s)	168, 292, 598
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	96, 110, 192, 389
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	799
XagI	CCTNNNNNAGG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	68
XspI	CTAG	3 cut(s)	69, 554, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.