Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003405.1

Orthogroup ID

OG0009232

Physical Location & Seq

Genomic Coordinates Reverse (-)

28604 .. 29833

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003405.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgtccaaattcatcaaactcagacagttctcagtaaagggttgttcatccttaaatgaagtgctacatcttgaagtattaacacttcttgagattcttgatctttctggaacagcagttcagagtctgcctcccctaaacacttttagcaacctccaccagctcttgctaaaagattgttcacagataaaagagttgcagtttctagagtcgcttagtaggctggaggttcttgatctgtcaggaaccagaatgaagcaatttccttatgagatatcagagcttactcatttaaagcagctttacctgccagacttgagggatatgtctgatcttgacttgggaaagataaagcgtttgccacaagaggtcaactgggatgaatgtggcatctttgagtgtgctgatatttacataggcagtgacaagacttccctatctgtaagtggctttgaaatttttcacattttggacaaacatccaaagtttcgggaagaaaagttcaaaaaatttcatttccatgtgaagaagaaggaaggtgaagatggaggtatcaagtacaacaaagatgaatttatcttcagagatgtgtacttccacactagaaatttttatcctaaagagcacgacaggtctttggaaatatatggatcatatagtctccctaatggttttgaaagtgtcctcaagtgtgccgaatgcttatctttggttgacaatgaccttatacatagcctatctgatttaggttctgacaatgtgaagacaatgaaaggctgttggttagagaggtgtagtaaagtacataacattctttctaatgaagaggcaggtgtcacactgggcagatgtttagagactctatggatttcaaaccttccaattttgagcagtctatacaatgggagtgtgcaatcagtggtctttcagaaccttaaacaattgtatctggattgttgtccaggcatcataaatgtctttccatcctcccagctgccaaaaaacctggaaaatctacatgttcagttttgtgataagttgcaaactttgtttgaatgtgattcacaatctagttgtgcaatgcaaaggttgaggaaattgtatctactggaactaccggagttgtggagcattgggataaaattgccagctgaactgacttttgtggtcatcgaatgccccaagttgctgaagctgcagttggatgtgactaaccagatctccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_5 LRR_8 NB-ARC

Protein Analysis

409

Amino Acids

46.96

Weight (kDa)

5.89

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19050 AT5G45510 AT5G45510
fragaria_vesca	FvH4_6g22120
malus_domestica	MD14G1055300.v1.1
prunus_persica	Prupe.7G078000_v2.0.a1 Prupe.7G078200_v2.0.a1
pyrus_communis	pycom14g04560
rosa_chinensis	RchiOBHm_Chr3g0479451
rosa_laevigata	RLG00000023571 RLG00000023572 RLG00000023574
rosa_multiflora	Rmu_sc0003405.1_g000008 Rmu_sc0004732.1_g000021 Rmu_sc0015035.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402260
rosa_rugosa	Rorug03G0175400
rosa_samantha	Rh3AG226600 Rh3BG259700 Rh3CG255700 Rh3DG251800
rosa_wichuraiana	Rw3G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	821
Acc36I	ACCTGC	2 cut(s)	315, 821
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	5 cut(s)	8, 456, 509, 572, 607
AcuI	CTGAAG	2 cut(s)	565, 1211
AfaI	GTAC	3 cut(s)	560, 593, 804
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	6 cut(s)	74, 455, 505, 677, 873, 1055
AjnI	CCWGG	2 cut(s)	961, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	1184, 1216
AloI	GAACNNNNNNTCC	4 cut(s)	102, 134, 485, 517
AluBI	AGCT	6 cut(s)	163, 283, 301, 994, 1151, 1195
AluI	AGCT	6 cut(s)	163, 283, 301, 994, 1151, 1195
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	665, 851
AlwI	GGATC	1 cut(s)	658
AlwNI	CAGNNNCTG	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	298, 994, 1195
ApoI	RAATTY	5 cut(s)	8, 456, 509, 572, 607
Asp700I	GAANNNNTTC	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	551
BaeI	ACNNNNGTAYC	2 cut(s)	929, 962
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	310, 981, 1182
BccI	CCATC	2 cut(s)	539, 991
BciT130I	CCWGG	2 cut(s)	963, 1007
BcoDI	GTCTC	2 cut(s)	665, 851
BfaI	CTAG	3 cut(s)	206, 603, 1071
BfmI	CTRYAG	1 cut(s)	1196
BfuAI	ACCTGC	2 cut(s)	315, 821
BglII	AGATCT	1 cut(s)	1218
BisI	GCNGC	3 cut(s)	299, 995, 1196
BlsI	GCNGC	3 cut(s)	300, 996, 1197
Bme1390I	CCNGG	2 cut(s)	963, 1007
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	963, 1007
BmrI	ACTGGG	2 cut(s)	385, 851
BmsI	GCATC	2 cut(s)	399, 975
BmuI	ACTGGG	2 cut(s)	385, 851
BpiI	GAAGAC	1 cut(s)	770
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	3 cut(s)	110, 337, 671
BsaWI	WCCGGW	1 cut(s)	1117
BsaXI	ACNNNNNCTCC	1 cut(s)	1205
Bse1I	ACTGG	3 cut(s)	380, 846, 1113
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	2 cut(s)	963, 1007
BseGI	GGATG	5 cut(s)	47, 385, 478, 983, 1210
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	2 cut(s)	34, 45
BseNI	ACTGG	3 cut(s)	380, 846, 1113
BseXI	GCAGC	3 cut(s)	310, 981, 1182
BseYI	CCCAGC	1 cut(s)	990
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	1118
BsmAI	GTCTC	2 cut(s)	665, 851
BsmI	GAATGC	2 cut(s)	704, 1181
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	5 cut(s)	100, 235, 331, 650, 1218
BspCNI	CTCAG	2 cut(s)	33, 44
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	1200
BspMI	ACCTGC	2 cut(s)	315, 821
BspPI	GGATC	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	1086
BsrI	ACTGG	3 cut(s)	380, 846, 1113
BssMI	GATC	5 cut(s)	100, 235, 331, 650, 1218
Bst2UI	CCWGG	2 cut(s)	963, 1007
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	1149
BstDEI	CTNAG	3 cut(s)	20, 31, 215
BstF5I	GGATG	5 cut(s)	47, 385, 478, 983, 1210
BstKTI	GATC	5 cut(s)	103, 238, 334, 653, 1221
BstMAI	GTCTC	2 cut(s)	665, 851
BstMBI	GATC	5 cut(s)	100, 235, 331, 650, 1218
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 307, 1195
BstNI	CCWGG	2 cut(s)	963, 1007
BstNSI	RCATGY	1 cut(s)	1022
BstSCI	CCNGG	2 cut(s)	961, 1005
BstSFI	CTRYAG	1 cut(s)	1196
BstV1I	GCAGC	3 cut(s)	310, 981, 1182
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	1218
BstYI	RGATCY	1 cut(s)	1218
BtsCI	GGATG	5 cut(s)	47, 385, 478, 983, 1210
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	427, 839, 924
BveI	ACCTGC	2 cut(s)	315, 821
Cac8I	GCNNGC	1 cut(s)	1149
CaiI	CAGNNNCTG	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	559, 592, 803
CviAII	CATG	2 cut(s)	521, 1019
CviQI	GTAC	3 cut(s)	559, 592, 803
DdeI	CTNAG	3 cut(s)	20, 31, 215
DpnI	GATC	5 cut(s)	102, 237, 333, 652, 1220
DpnII	GATC	5 cut(s)	100, 235, 331, 650, 1218
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco32I	GATATC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	565, 1211
EcoRII	CCWGG	2 cut(s)	961, 1005
EcoRV	GATATC	1 cut(s)	276
FaeI	CATG	2 cut(s)	524, 1022
FatI	CATG	2 cut(s)	520, 1018
Fnu4HI	GCNGC	3 cut(s)	299, 995, 1196
FokI	GGATG	5 cut(s)	34, 392, 465, 970, 1217
Fsp4HI	GCNGC	3 cut(s)	299, 995, 1196
FspBI	CTAG	3 cut(s)	206, 603, 1071
GluI	GCNGC	3 cut(s)	299, 995, 1196
GsaI	CCCAGC	1 cut(s)	994
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	1 cut(s)	1118
Hin1II	CATG	2 cut(s)	524, 1022
HincII	GTYRAC	2 cut(s)	373, 715
HindII	GTYRAC	2 cut(s)	373, 715
HinfI	GANTC	5 cut(s)	94, 124, 209, 859, 1061
HpaII	CCGG	1 cut(s)	1118
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	4 cut(s)	182, 373, 592, 715
Hpy188I	TCNGA	8 cut(s)	23, 123, 280, 331, 584, 742, 754, 930
Hpy8I	GTNNAC	4 cut(s)	182, 373, 592, 715
HpyAV	CCTTC	3 cut(s)	526, 530, 887
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	199, 913, 1042, 1079, 1084, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 307, 1195
HpyF3I	CTNAG	3 cut(s)	20, 31, 215
Hsp92II	CATG	2 cut(s)	524, 1022
Kzo9I	GATC	5 cut(s)	100, 235, 331, 650, 1218
LmnI	GCTCC	1 cut(s)	1128
Lsp1109I	GCAGC	3 cut(s)	310, 981, 1182
LweI	GCATC	2 cut(s)	399, 975
MaeI	CTAG	3 cut(s)	206, 603, 1071
MaeIII	GTNAC	3 cut(s)	422, 835, 1207
MalI	GATC	5 cut(s)	102, 237, 333, 652, 1220
MboI	GATC	5 cut(s)	100, 235, 331, 650, 1218
MboII	GAAGA	7 cut(s)	506, 538, 541, 554, 571, 775, 836
MfeI	CAATTG	1 cut(s)	941
MflI	RGATCY	1 cut(s)	1218
MhlI	GDGCHC	1 cut(s)	627
MlyI	GAGTC	3 cut(s)	133, 218, 853
MmeI	TCCRAC	1 cut(s)	1182
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	4 cut(s)	53, 80, 293, 936
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	994, 1151
MspI	CCGG	1 cut(s)	1118
MspR9I	CCNGG	2 cut(s)	963, 1007
MunI	CAATTG	1 cut(s)	941
Mva1269I	GAATGC	2 cut(s)	704, 1181
MvaI	CCWGG	2 cut(s)	963, 1007
MwoI	GCNNNNNNNGC	3 cut(s)	220, 307, 1195
NdeII	GATC	5 cut(s)	100, 235, 331, 650, 1218
NlaIII	CATG	2 cut(s)	524, 1022
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	3 cut(s)	422, 835, 1207
NspI	RCATGY	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	821
PciI	ACATGT	1 cut(s)	1018
PctI	GAATGC	2 cut(s)	704, 1181
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	94, 1061
PkrI	GCNGC	3 cut(s)	300, 996, 1197
PleI	GAGTC	3 cut(s)	132, 217, 853
PpsI	GAGTC	3 cut(s)	132, 217, 853
PscI	ACATGT	1 cut(s)	1018
Psp6I	CCWGG	2 cut(s)	961, 1005
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	2 cut(s)	961, 1005
PspN4I	GGNNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	1200
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	1218
PvuII	CAGCTG	2 cut(s)	994, 1151
RsaI	GTAC	3 cut(s)	560, 593, 804
RsaNI	GTAC	3 cut(s)	559, 592, 803
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	53, 80, 293, 936
SatI	GCNGC	3 cut(s)	299, 995, 1196
Sau3AI	GATC	5 cut(s)	100, 235, 331, 650, 1218
SchI	GAGTC	3 cut(s)	133, 218, 853
ScrFI	CCNGG	2 cut(s)	963, 1007
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	2 cut(s)	399, 975
SfcI	CTRYAG	1 cut(s)	1196
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	3 cut(s)	89, 316, 686
SmoI	CTYRAG	3 cut(s)	89, 316, 686
SspMI	CTAG	3 cut(s)	206, 603, 1071
StyD4I	CCNGG	2 cut(s)	961, 1005
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	1173
TatI	WGTACW	3 cut(s)	558, 591, 802
TfiI	GAWTC	2 cut(s)	94, 1061
Tru1I	TTAA	4 cut(s)	53, 80, 293, 936
Tru9I	TTAA	4 cut(s)	53, 80, 293, 936
TscAI	CASTG	3 cut(s)	427, 846, 924
TseFI	GTSAC	3 cut(s)	422, 835, 1207
TseI	GCWGC	3 cut(s)	298, 994, 1195
Tsp45I	GTSAC	3 cut(s)	422, 835, 1207
TspDTI	ATGAA	8 cut(s)	36, 72, 269, 396, 503, 585, 785, 837
TspRI	CASTG	3 cut(s)	427, 846, 924
XapI	RAATTY	5 cut(s)	8, 456, 509, 572, 607
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	3 cut(s)	206, 603, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.